Biochemical characterisation of a Kunitz-type inhibitor from Tamarindus indica L. seeds and its efficacy in reducing plasma leptin in an experimental model of obesity

Abstract

A trypsin inhibitor isolated from tamarind seed (TTI) has satietogenic effects in animals, increasing the cholecystokinin (CCK) in eutrophy and reducing leptin in obesity. We purified TTI (pTTI), characterised, and observed its effect upon CCK and leptin in obese Wistar rats. By HPLC, and after amplification of resolution, two protein fractions were observed: Fr1 and Fr2, with average mass of [M + 14H]⁺ = 19,594,690 Da and [M + 13H]⁺ = 19,578,266 Da, respectively. The protein fractions showed 54 and 53 amino acid residues with the same sequence. pTTI presented resistance to temperature and pH variations; IC₅₀ was 2.7 × 10⁻¹⁰mol.L⁻¹ and Ki was 2.9 × 10⁻¹¹mol.L⁻¹. The 2-DE revealed spots with isoelectric points between pH 5 and 6, and one near pH 8. pTTI action on leptin decrease was confirmed. We conclude that pTTI is a Kunitz trypsin inhibitor with possible biotechnological health-related application.

Introduction

Obesity is a chronic non-communicable disease (CNCD) with a prevalence that has more than doubled since the 1980s¹. By 2015, a total of 603,700 million adults and 107,700 million children were obese². There is evidence that individuals and animals with obesity do not show the same sensitivity to the satietogenic effects of cholecystokinin (CCK) when compared to eutrophic, and the resistance to leptin is increased especially in the state of obesity^3–5.

CCK is a regulatory hormone of the centre of hunger and satiety. This regulation involves the stimulation of insulin and glucagon secretion, and induction of satiety is given via gastric receptors that carry information to the hypothalamus and the nucleus of the solitary tract via the vagal afferent nerve⁶. There are also reports of its interaction with leptin, related to appetite and hunger control³. Leptin is an adipokine secreted hormone in proportion to the amount of adipose tissue and its concentrations increase with caloric intake and decrease during the fasting period, being elevated in obesity⁷.

Several studies have shown the satietogenic ability of trypsin inhibitors isolated from different sources, stimulating CCK increases^8–12. Thus, these CCK stimulators are commonly called CCK secretagogues^9–11,13,14.

Peptidase inhibitors, which include trypsin inhibitors, act as natural regulators of proteolytic enzymes¹⁵ and are therefore targets for research with potential biotechnological applications in a number of areas, such as medicine and agriculture¹⁶. Trypsin inhibitors are often found in seeds, and many of these proteins have been purified and characterised¹⁷.

A thorough biochemical and functional characterisation are possible after protein purification. Data such as sequencing, determination of three-dimensional structures, inhibitory specificity for classes of peptidases and inhibition mechanisms are essential^18–20 and widely used in the analysis of substances of bioanalytical, alimentary, and pharmaceutical importance^21,22.

The seeds from the tamarind fruit (Tamarindus indica L.) are source of different trypsin inhibitors. However, the trypsin inhibitors of this seed are still poorly studied, and some studies present the bioinsecticidal, anti-inflammatory, and satietogenic properties of these molecules^{11,12,23–26}.

A previous study with the partially purified trypsin inhibitor from tamarind seeds (TTI) evaluated CCK and leptin concentrations in obese Wistar rats and found that TTI did not increase plasma CCK, but decreased plasma leptin²⁵. Results presented by Ribeiro et al.¹¹, also using TTI, suggest a synergistic action of TTI on these two hormones, depending on the condition of nutritional status. However, in these studies, TTI was only partially purified and we cannot guarantee which molecule(s) is/are responsible for the observed effects. Thus, in the present study we purified, characterised, and partially sequenced the trypsin inhibitor of the tamarind seed, reevaluating its effect upon plasmatic CCK and leptin in an experimental model of obesity. This is a necessary step for a promising protein isolate for bioprospecting new bioproducts and necessary to ascertain its action as a pure molecule.

Materials and methods

Plant material

The tamarind fruit, from the Tamarindus genus and indica L. species, which belongs to the Fabaceae family²⁷ was obtained, and botanically identified by the IBAMA (Environmental- middle Brazilian Institute) seed bank in Natal-RN, Brazil. The pulp was separated from the seed, and the flour from the peeled seeds was used for the experiments.

Animals

Male, obese (350–400 g), according to Lee index (>0.300 g/cm³)²⁸. Wistar rats with age of 17 weeks, were provided by Potiguar University vivarium and kept in the laboratory under standard light–dark cycle conditions (12/12 h), temperature between 23 and 25 °C, water and food ad libitum.

The research was conducted according to Guide for the Care and Use of Laboratory Animals²⁹ and approved under protocol no. 012/2015 by the Ethics Committee on Animal Use (EUA-UNP) under protocol no. 012/2015.

Experimental design

After the isolation of the molecule of interest, experiments were performed to analyse the purification steps and to determine or estimate biochemical characteristics, such as molecular mass, amino acid sequence, alignment, stability, specificity parameters, mechanism of action, and isoelectric point. We also evaluated the purified inhibitor in an experimental model of obesity, observing its effect in plasmatic CCK and leptin in Wistar rats with obesity induced by a high-glycaemic index and glycaemic load diet.

Purification of the trypsin inhibitor from T. indica L

This research followed an adapted protocol to obtain TTI¹² and continued the purification according to the physical–chemical characteristics of the studied molecule. Peeled tamarind seeds had their cotyledons crushed in a refrigerated grinder (6 °C) until a fine-grained flour was obtained. This flour was solubilised in 50 mM Tris-HCl buffer, pH 7.5 at the ratio of 1:10 (w/v) under constant stirring for 3 h at 22 °C. After stirring, this homogenate was centrifuged at 12,000 rpm for 30 min at 4 °C. The precipitate from this centrifugation was discarded and the supernatant denominated the crude extract (CE).

The protein fractionation of the CE was performed by ammonium sulphate precipitation with the following saturation ranges: 0–30% (F1), 30–60% (F2), and 60–90% (F3). After each stage of precipitation, each saturation range was centrifuged for 30 min at 10,000 rpm, 4 °C. Each precipitate was resuspended in 50 mM Tris-HCl buffer, pH 7.5 and dialysed against distilled water for 20 h and against the same extraction buffer for further 20 h on a 12 kDa cut off pore membrane.

The fraction with the highest anti-trypsin activity, which was F2 (30–60%), was applied to a Trypsin-Sepharose affinity column (CNBr-activated Sepharose™ 4B, GE Healthcare, Little Chalfont, UK), pre-equilibrated with Tris-HCl (50 mM), pH 7.5. Non-retained proteins in the column were eluted with the same extraction buffer and the proteins retained in the matrix were eluted with HCl (5 mM) and collected in 5 ml aliquots. This eluate was dialysed against the extraction buffer and lyophilised, and TTI was obtained.

This set of trypsin inhibitors was applied and analysed by reversed-phase HPLC on a Shimadzu LC-10 A Liquid Chromatography consisting of a binary solvent pumping system (LC-10ADvp), UV-Vis spectrophotometric detector (SPD-10 A VP), Rheodyne injector and workstation with system control application (SCL-10Avp system controller configured with Lab solutions-LC solution Shimadzu software).

First, TTI was analysed in an analytical Shimadzu C18 (octadecylsilane) column (4.6 mm × 250 mm, 5 μm, 300 Å), with the following conditions: solvent A (0.1% of trifluoroacetic acid – 0.1%TFA/analytical grade water) and solvent B (60% of Acetonitrile – 60%ACN/0.1% TFA/analytical grade water), with linear gradient of 5 to 95% solvent for 30 min with percentage variation of ACN in solvent B of 3% min⁻¹; flow rate of 1 ml min⁻¹ and monitored by UV detection at 220 nm for peptide detection. From the analysis, the ideal percentage of solvent B for TTI was between 30 and 60% in 10 min with a percentage variation of ACN in solvent B of 3% B min⁻¹. The purification was performed by injecting 150 μl of TTI at 2 mg mL⁻¹ in a reverse-phase chromatography with a Vydac preparative C18 column (2.2 cm × 25 cm, 5 μm, 300 Å) with solvent A and solvent B at a flow rate of 9 ml min⁻¹, and UV detection at 220 nm. Major protein components were manually collected.

The protein fraction obtained under the conditions described earlier, pure TTI (pTTI), was again subjected to a reverse-phase chromatography to amplify the separation resolution. 1 mg aliquot of pTTI was solubilised in 1 ml of analytical grade water, and applied onto a reverse-phase HPLC analytical column (Vydac C18, 4.6 × 250 mm, 5 μm, 300 Å). Solvent A (0.1% TFA/analytical grade water) and solvent B (60%ACN/0.1%/TFA analytical grade water) were used, with gradient from 5 to 65% B in 55 min (1.09% B min⁻¹), and 65 to 95% B in 5 min (6%B min⁻¹), with a flow rate of 1 ml min⁻¹ and total time of 70 min. Elution of the protein content was monitored by UV detection at 216 and 280 nm. The protein samples were manually collected.

Protein quantification and anti-trypsin activity

Protein quantification was done by the Bradford method using bovine serum albumin (BSA) as the standard³⁰. Anti-trypsin activity was assessed according to Kakade et al. methodology³¹ using N-benzoyl-D,L-arginine-4-nitroanilide (BApNA) as the reaction substrate, 0.3 mg ml⁻¹ of trypsin, determining the amount according to the titration curve, with amounts of inhibitor according to the test design. The negative control was a sample without addition of BApNA during the reaction. The assays were performed in triplicate.

Fraction analysis from each purification step

The purification steps were analysed using 30 μg of protein from each step: CE, F2 (30–60%), TTI and pTTI, starting from 40 g of tamarind seed flour. Thus, volumes obtained in each step, the total amount of proteins, inhibitory units (IU), specific activity (IU.mg⁻¹), degree of purification, and recovery were compared.

The inhibition unit (IU) was established by the difference between the total enzymatic activity of trypsin and the activity of the enzyme with CE, F2, TTI, and pTTI at absorbance from 0.01 to 410 nm. Thus, 1 IU was defined as the amount of inhibitor that decreased the absorbance by 0.01 optical density at the trypsin assay conditions^32,33.

The results obtained with the CE were used as parameters for the determination of F2, TTI, and pTTI, with recovery 1 assigned to 100%. The purification, in number of times, was given by the ratio between the specific activities of each stage with the specific activity of the CE. The calculation was performed based on the ratio of the total protein quantity of each step to the total amount of proteins from the CE.

MALDI-TOF/MS

To analyse the level of purification and the molecular mass of each pTTI fraction, the pTTI fractions were applied in Bruker UltrafleXtreme III (Bruker Daltonics, Billerica, MA) spectrometer with MALDI ionisation source and TOF operation was conducted in the linear mode and molecular mass range from 2 to 23 kDa. Samples were prepared by mixing the fractions of pTTI and α-cyano-4-hydroxycinnamic acid matrix (α-CHCA) in the ratio 3:1 (v/v). The matrix was prepared in 50% ACN and 0.1% TFA. Data were acquired using Flex control and processed by FlexAnalysis (Bruker Daltonics, Germany) software version 3.4.

ESI-MS

To determine the accurate molecular mass of each pTTI fraction, mass spectrometry with electrospray ionisation source (ESI-MS) was used in the MicrOTOF-Q II (Bremen, Bruker Daltonics, Germany) spectrometer. pTTI fractions were solubilised in 200 µL of solvent A (1:1 H₂O:Acetonitrile +0.1% Formic Acid) by direct infusion at the source. Data were processed by Compass DataAnalysis (Bruker Daltonics, Bremen, Germany) software version 4.3.110.

Reduction and alkylation

The pTTI fractions were subjected to reduction by dithiothreitol (DTT, 50 mM) in ammonium bicarbonate solution (50 mM, pH 8.0) in water bath at 70 °C for 1 h. Then, for the alkylation of the thiol groups, 100 µl of iodoacetamide (IAM, 25 mM) was added to this solution to a concentration of 9.4 mg.mL⁻¹. The reaction was kept at 37 °C for 1 h. The alkylation reaction was stopped by the addition of 5 μl of 50 mM of DTT. The pTTI fractions were then centrifuged at 13 400 rpm, for 5 min at 4 °C.

The reduced and alkylated pTTI fractions were subjected to chromatographic analysis. The procedure was performed by reversed-phase HPLC in an analytical column (Vydac C18, 4.6 mm ×250 mm, 5 μm, 300 Å). A gradient was used in which the first 15 min was 5% B to desalt, followed by a linear gradient of 5 to 65% B in 60 min (1%B.min⁻¹); 65% to 95% B in 5 min (6% B.min⁻¹), flow 1 ml.min⁻¹, finishing the run with total time of 80 min. The reduced and alkylated pTTI fractions were manually collected, lyophilised, and solubilised in 200 μL of analytical grade water.

Aliquots of 1 μl of each reduced and alkylated pTTI fraction were analysed by MALDI-TOF and ESI-MS, as detailed above. In order to estimate the number of alkylated cysteines, a formula was applied using the molecular mass difference of the protein in its native form and its reduced and alkylated form, divided by the molecular mass of the carbamidomethyl group, which has 57.1 Da: N°Cys_alq = (M_alq − M_nat)/57.1, in which: N°Cys_alq is the number of alkylated cysteines, M_alq is the molecular mass of the reduced and alkylated protein, M_nat is the molecular mass of the native protein and 57.1 is the molecular mass in Da of the carbamidomethyl group.

Partial sequencing

From reduced and alkylated samples the fractions were solubilised in 10 μL of analytical grade water, 1 μL was combined with the 1,5-diaminonaphthalene (DAN) matrix at 6:1 (v/v). The matrix was prepared in 50% ACN and 0.1% TFA. After crystallisation, the analysis was done in an UltrafleXtreme spectrometer in the MALDI-TOF ionisation source by in-source decay (ISD) method. Manual peptide sequencing was performed using the Flex Analysis software (version 3.4.) to assign the -c and -z series.

Multiple alignment

The obtained sequence was analysed and compared with sequences described in the NCBI (National Center for Biotechnology Information) non-redundant protein database, using BLASTp (Basic Local Alignment Search Tool − protein), with the multiple sequence alignment with sequences above 35% of identity in the database. The obtained alignment was processed using BioEdit Sequence Alignment Editor software, version 7.2.6.1³⁴.

Stability to denaturing agents

The methodology proposed by Gomes et al.³⁵ was used to analyse the pTTI profile against pH extremes and temperature variation. For pH testing, 12 µg of pTTI was dialysed for 16 h, against the following buffers: glycine, pH 2, and pH 3; sodium phosphate, pH 6, and pH 8; glycine, pH 11, and pH 12 with a solute concentration of 100 mM. Subsequently, they were incubated for 30 min at 37 °C in the quenched buffers and dialysed over 4 h in 50 mM of Tris-HCl, pH 7.5. Then, the anti-trypsin inhibition assay³¹ was conducted. To ascertain the inhibitor stability at different temperatures, 12 µg of pTTI was incubated for 30 min at temperatures of 40, 60, 80, and 100 °C in water bath. The sample was cooled to 4 °C and then the anti-trypsin inhibition assay was performed³¹.

Ki and IC50 against trypsin

Increasing amounts of pTTI (0.02, 1, 2, 3, 5, 6, 8 10 µg) were used in the anti-trypsin activity assay as previously mentioned³⁵. The per cent of inhibition of each trypsin concentration was used for curve construction and the IC₅₀ was estimated by probit regression, with the pTTI concentrations transformed to log10 base and the response as the per cent of inhibition. Data were processed using IBM SPSS Statistic 20 software.

Ki was estimated by the intersection point between two lines, representing the two concentrations of BApNA (1.25 mM and 0.625 mM), according to the Dixon; Webb (1979) model³⁶. The rate of enzymatic reaction (v) was expressed as the OD reaction product at 405 nm as a function of the reaction time (h) and volume (mL) as follows: v = OD h⁻¹ mL⁻¹.

Isoelectric point

The pI estimation was performed as described by O’Farrell (1975)³⁷, using 16 μg of pTTI. An immobilised gradient strip of pH 3 to 10 and 12% SDS-PAGE were used, as described by Laemmli (1970)³⁸. The molecular mass marker ECLTM RainbowTM Marker – Full Ranger (AmershamTM) (12,000–225,000 Da) was used. The gel was revealed by Coomassie Blue staining. The pI estimation was performed by gel measurement, according to the scale size of the pH tape.

Experimental model of obesity

Obese animals were randomly divided into two groups with five animals each: (1) Control Group, without treatment (C) (n = 5) and (2) Treatment group, with animals receiving pTTI (T) (n = 5). The animals were submitted to an adaptation period of five days, followed by ten days of treatment. Both groups received a high glycaemic index (77.6) and load (38.8) experimental diet for 15 days (during adaptation and treatment period), composed of Labina^®, condensed milk, and refined sugar (4.5: 4.5: 1) (unpublished results).

During the 10 days of experiment and before treatments, the animals were daily fasted for 6 h. The control group received 1 ml of water per gavage/day and the Treatment group 1 ml of pTTI at a dose of 730 μg/Kg per gavage/day. This dosage was defined as a result of the pTTI IC₅₀, following Carvalho et al.¹² dosing recommendations, of 25 mg/Kg of TTI, also based on its IC₅₀. On day 11, the animals were fasted for 8 h and anesthetised (250 mg tiletamine hydrochloride and 250 mg zolazepam hydrochloride). The animals’ blood was collected from the hepatic portal vein and animals were then euthanised. The collected blood was stored in tubes with EDTA and centrifuged at 3000 rpm for 10 min.

The dosages of CCK and leptin were performed by enzyme-linked immunosorbent assay (ELISA), as determined by the Enzyme Immunoassay Kit, Cholecystokinin (CCK)^26–33 (Non-Sulphated) −(Phoenix Pharmaceuticals Inc., Burlingame, CA, USA) and Rat Leptin ELISA protocol (Millipore^®-EZRL-83 K, Billerica, MA, USA).

Statistical analysis

All data were obtained from at least three independent experiments and expressed as mean and standard deviation (SD), except when expressly indicated otherwise. The unpaired T-test was performed using the GraphPad Prism 6.0 software.

Results

Purification of the trypsin inhibitor from T. indica L

The analytical C18 chromatogram demonstrates the protein profile of the purified inhibitor (Figure 1(A)). The protein peak corresponding to pTTI can be observed in Figure 1(B), with a retention time (RT) of 10 min and elution with 37.4% of ACN.pTTI was again injected into a reverse-phase analytical column (Vydac C18, 4.6 × 250 mm, 5 μm, 300 Å), increasing resolution. Thus, a total of 140 μg/500 μl was injected and two major protein peaks were observed (Figure 1(C)). These were denominated fractions of pTTI, fraction 1 (Fr1), and Fraction 2 (Fr2). Fr1 presented with an RT of 37 min and Fr2 of 39 min. The percentage of solvent B was 45.5% and 47.8%, respectively.

Figure 1.

Chromatographic profile of TTI, pTTI, and its fractions in reversed-phase high-efficiency liquid chromatography. (A) Chromatographic profile of the partially purified inhibitor (TTI) in analytical C₁₈ column. (B) Chromatographic profile of pTTI in preparative C₁₈ column. (C) Chromatographic profile of fractions 1 and 2 by method refinement of pTTI in analytical C₁₈ Vydac column. TTI: Trypsin inhibitor partially purified from tamarind seeds. pTTI: purified tamarind trypsin inhibitor from T. indica L.

Fraction analysis from each purification step

The purification steps were evaluated and are presented in Table 1. A reduction of the total amount of soluble proteins can be observed between the steps, concomitantly increasing the specific activity (IU.mg⁻¹) of pTTI. In addition, it is possible to observe a recovery of approximately 2% of the total protein contained in the crude extract (CE).

Table 1.

Purification steps of pTTI from T. indica L. seeds.

Steps	Volume (ml)	Total Protein (mg)	Total Protein in assay (mg)	Concentration (mg/ml)	Inhibition units (IU)	Specific activity (IU.mg−1)	Purification (x)	Recuperation (%)
Crude extract	354	644	0.03	1.82	27.5	915	1	100
F2 (30–60%)	165	292	0.03	1.77	23.8	794	0.87	45.3
TTI	627	53.3	0.015	0.085	25.8	1720	1.88	8.27
pTTI	4.6	12.8	0.012	2.8	26.4	2196	2.40	1.99

F2(30–60%): Fraction 2 with ammonium sulphate saturation of 30–60%; TTI: trypsin inhibitor isolated from T. indica L; pTTI: purified tamarind trypsin inhibitor from T. indica L.

MALDI-TOF

The MALDI-TOF average molecular mass spectrum of each fraction of pTTI is shown in Figures 2(A,C). Figure 2(A) shows Fr1, which presented different masses that possibly represent three charge states of the same molecule, [M + H]⁺ = 19,573 Da; [M + 2H]⁺ = 9788 Da and [M + 3H]⁺ = 6525 Da. Fr2 when analysed under the same conditions as Fr1, also presented different masses that may represent three charge states of the same molecule, [M + H]⁺ = 19,573 Da; [M + 2H]⁺ = 9789 Da and [M + 3H]⁺ = 6528 Da (Figure 2(C)). Besides these ions, we observed in the spectra of the two fractions, two ions with 13,164 Da and 1315 Da. However, these molecular components could not be unequivocally determined.

Figure 2.

MALDI-TOF and ESI mass spectra of fractions 1 and 2. Mass spectra in MALDI-TOF, linear acquisition mode of (A) Fraction 1 and (B) Fraction 2. ESI MS mass spectrum of (C) Fraction 1 and (D) Fraction 2. pTTI: Purified tamarind trypsin Inhibitor from T. indica L.

ESI-MS

The average molecular masses analysed in MicroTOF-Q II spectrometer, with ESI ionisation are shown in Figure 2(B,D). The molecular mass of Fr1 was [M + 14H]⁺ = 19,594.689 Da (Figure 2(B)) and Fr2 was [M + 13H]⁺ = 19,578.266 Da (Figure 2(D)). The molecular mass difference between the fractions is 16.423 Da.

Reduction and alkylation

The fractions Fr1 and Fr2 when reduced and alkylated showed a protein peak of higher absorbance with RT of 46 min and 51 min and concentration of solvent B of 36.9% and 41.1%, and were denominated Fr1.1 and Fr2.1, respectively (Figure 3(A,D)).

Figure 3.

Chromatograms, mass spectra with MALDI-TOF ionisation source and ESI spectra in micrOTOF-Q II of reduced and alkylated fractions 1 and 2 (Fr1.1 and Fr2.1). (A) Chromatogram of reduced and alkylated Fr1. (B) MALDI-TOF mass spectrum of Fr1.1, with three major charge states. (C) ESI mass spectrum of Fr1.1, showing its protonated molecular mass. (D) Chromatogram of reduced and alkylated Fr2. (E) MALDI-TOF mass spectrum of Fr2.1, with three charge states. (F) ESI mass spectrum of Fr2.1, showing its protonated molecular mass. pTTI: Purified tamarind trypsin Inhibitor from T. indica L.

The fractions Fr1.1 and Fr2.1 were analysed by MALDI-TOF to investigate the reduction and alkylation reaction. Fr1.1 presented two predominant ions with m/z = 6878 Da and m/z = 3437 Da (Figure 3(B)). When compared to the Fr1 (native) spectrum, it was observed that there was no ion with mass near 19.8 kDa, which would represent the reduced and alkylated molecule (Figure 4). Thus, it was not possible to infer the charge state of the two ions, and therefore to estimate the amount of cysteines in this molecule, which leads us to the hypothesis that the ion with 19,594.690 Da observed in the native fraction may be a trimer of the ion with 6525 Da, and this, in turn, is a fragment of Fr2.

Figure 4.

Chromatogram and spectra in MALDI-TOF fractions obtained from Fr1 after reduction and alkylation. (A) Chromatogram of Fr1 after reduction and alkylation, with designation of the purified fractions. (B) Spectra acquired in MALDI-TOF from purified fractions of the reduced and alkylated Fr1 with respective chromatogram designation.

The fraction Fr2.1, presented ions whose masses m/z were 19,805 Da, 9901 Da, and 6600 Da, which can represent three charge states, mono, double, and triple-charged, respectively (Figure 3(E)). In addition, they corroborate with the expected masses for reduced and alkylated Fr2 and show the presence of four cysteines, which favour the presence of two disulphide bonds.

The molecular masses analysed in MicroTOF-Q II spectrometer with ESI ionisation source of Fr1.1 and Fr2.1 are presented in Figures 3(C,F). The molecular mass of Fr1.1 was [M + H]⁺ = 6878.511 Da and of Fr2.1 was [M + H]⁺ = 19,810.584 Da.

Partial sequencing

Fractions Fr1.1 and Fr2.1, those reduced and alkylated, were partially sequenced by in-source decay in MALDI-TOF MS, using DAN as matrix. The spectrum with the primary partial sequence of Fr1.1 is shown in Figure 5(A), the obtained signal had a molecular mass of [M + H]⁺ = 6878 Da, and the spectrum of Fr 2.1, in Figure 5(B), had a molecular weight of [M + H]⁺ = 6722 Da.

Figure 5.

Sequencing by in-source decay MALDI-TOF of reduced and alkylated pTTI fractions, exhibiting the amino acid residue sequence above the 1000 m/z region. (A) Fr1.1 spectrum. (B) Fr2.1 spectrum. Sequences obtained comprised 53 amino acid residues, identical for both fractions. pTTI: purified tamarind trypsin inhibitor from T. indica L.

The possibility that Fr1 is a fragment of Fr2, becomes more consistent when a parental ion of [M + H]⁺ = 6878 Da is observed in the partial sequence of Fr1.1, which resulted in a primary sequence with 54 amino acid residues (Figure 5(A)).

In Fr2.2, also partially sequenced, in the spectrum of this sequencing no parental ion is observed, evidencing that the molecular mass of Fr2.1 is larger than the fragment analysed, whose sequence was obtained from the ion with [M + H]⁺ = 6722 Da (Figure 5(B)).

The sequence obtained contains 53 amino acid residues and is the same as the sequence obtained for Fr1.1, further corroborating the hypothesis that this is a fragment of Fr2.1. Moreover, these results are also evidenced by the ESI spectra, which shows an accurate mass of [M + 5H]⁺ = 6878.511 Da (Fr1.1) and [M + H]⁺ = 19,810.584 Da (Fr2.1) (Figure 2(C,D)).

The partial sequence obtained presented the sum of the average molecular mass of the resulting amino acid residues of 5582.345 Da, representing about 81% and 84% coverage of the molecular mass obtained for Fr1.1 and Fr2.1, respectively. The sequence obtained is composed of 54 and 53 amino acid residues as following:

Fr1.1:

(I/L)NNAGKYY(I/L)(I/L)PAKKGKGGG(I/L)G(I/L)SNDDDGNCP(I/L)-TVSQTP(I/L)D(I/L)P(I/L)G(I/L)PVRFSSRAR.

Fr2.1:

(I/L)NNAGKYY(I/L)(I/L)PAKKGKGGG(I/L)G(I/L)SNDDDGNCP(I/L)TVSQTP(I/L)D(I/L)P(I/L)G(I/L)PVRFSSRA.

Because, the molecular masses of leucine and isoleucine are identical, with 113.160 Da, it is not possible to distinguish between these residues.

Multiple alignment

The search in the database of the 54 amino acid residues of pTTI resulted in several possible sequences of alignment. Alignment is shown in Figure 6. The primary sequence of pTTI lies between residues 40 and 100 when compared to other aligned sequences. The highest percentages of identity were with the sequences of kunitz family trypsin inhibitor from tamarind, the first three sequences of Figure 6, with 91, 91, and 89% of identity. The other sequences showed between 35 and 56% of identity. The smaller e-value was for the tamarind itself, Copaifera Langsdorffii (popularly known as Copaíba) and Glycine Max (soybean).

Figure 6.

Multiple alignment of the primary partial sequence of pTTI with other sequences deposited in the NCBI. pTTI: purified tamarind trypsin inhibitor from T. indica L.

Stability to denaturing agents

Thermal and pH variation stabilities were assessed by intracellular in vitro activity of pTTI. In the heating test, pTTI maintained its antitrypsin activity, except at 100 °C, still maintaining about 70% of its activity compared to that presented at the temperature of 40 °C. Activities at temperatures 60 and 80 °C were maintained, with a small reduction, as shown in Figure 7(A). In the pH assay, stability was also seen, with a small reduction of the antitrypsin activity in the range of pH 6 to pH 8, which may be due to the pI of this inhibitor (Figure 7(B)).

Figure 7.

(A) Stability of pTTI at different temperatures. (B) Stability of pTTI at different pH. pTTI: purified tamarind trypsin inhibitor from T. indica L.

Ki and IC50 against trypsin

The IC50 resulted in 2.7 × 10⁻¹⁰mol L⁻¹ pTTI to inhibit trypsin activity by 50% (Figure 8(A)). The K_i value was of 2.9 × 10⁻¹¹mol L⁻¹. As shown in Figure 8(B), the inhibition assays indicated that pTTI acts as a competitive inhibitor.

Figure 8.

Estimation of pTTI specificity parameters. (A) Trypsin inhibition curve using increasing amounts of pTTI. (B) Estimation of inhibition kinetics and pTTI trypsin inhibition constant. pTTI: purified tamarind trypsin inhibitor from T. indica L.

Isoelectric point

The pI was estimated from the analysis of two-dimensional electrophoresis gel. 16 µg pTTI was applied to the two-dimensional gel. It was possible to observe some spots near pH 5 and 6, 18 kDa, and another spot near pH 8 (Figure 9).

Figure 9.

Two-dimensional electrophoresis of pTTI with gradient strips of pH 3–10. Arrows indicate the spots estimated between pH 5 and 6, in addition to another with a pH of approximately 8. pTTI: purified tamarind trypsin inhibitor from T. indica L.

Experimental model of obesity

Plasma concentrations of CCK and leptin are shown in Table 2. For CCK concentrations, a slight increase in the pTTI-treated group can be observed (not significant). We observed that 60% of the obese animals receiving pTTI (n = 03) had very low leptin concentrations, under the minimum detection concentration (< 0.1 ng/mL). Thus, the only two obese animals with detectable plasma leptin presented 0.28 ng/mL of this hormone, also very low, however, detectable by the test. This made comparing mean plasma leptin concentrations between studied groups unfeasible. In the untreated group, 100% animals had values above the detectable level (>0.1 ng mL⁻¹) (Table 2).

Table 2.

Plasma concentrations of CCK and leptin from obese Wistar rats treated with pTTI for 10 days.

Groups	Plasmatic CCK (ng/ml) Mean (SD)	Plasmatic leptin (ng/ml) Mean (SD)
Control (without treatment)	2.03 (0.49)a	0.50 (0.14)
Treatment with pTTI	2.51 (0.27)a	0.28b

The groups received a high glycaemic (77.6) and load (38.8) index diet. There was no statistical difference between groups for CCK, p > .05, unpaired T test. pTTI: Purified tamarind trypsin inhibitor from T. indica L.

^aThere was no significant difference between groups.

^b60% of animals in this group had plasma leptin values below the detection concentration (0.1 ng/mL) and the standard deviation was not calculated.

Discussion

Characterising a peptidase inhibitor is fundamental for its classification and knowledge of its properties, important for further investigation of therapeutic features. Several peptidase inhibitors have been characterised and studied in human diseases, such as acquired immune deficiency syndrome (AIDS), Alzheimer’s, osteoporosis, cardiovascular diseases, rheumatoid arthritis, cancer, obesity, and others^12,39–42.

Once there are reports of anti-obesity and anti-inflammatory effects of crude inhibitors isolated from the aqueous extracts of the T. indica L. seed in eutrophic and obese Wistar rats^11,12, we decided to observe the effects of the purified trypsin inhibitor (pTTI). In addition, the chemical and structural analyses of pTTI were performed to identify this compound and characterise its inhibition mechanism.

In the pTTI purification process, the specific activity data, in which the purified inhibitor has a higher IU mg⁻¹ protein compared to the previous steps, demonstrated the increase in the inhibition potential of this protein as the purification process occurs, and Fr1.1 and 2.1 were not tested independently.

The recovery is also an item to be highlighted, which was approximately 2% higher than the starting CE. The yield of the purification process is an important data in the study with these inhibitors with bioactive potential since they involve several steps. Well delimited, high reproducible steps are crucial and must be carried out to achieve the highest possible yield⁴³.

Thus, pTTI was purified and the molecular masses, measured by the ESI ionisation technique for Fr1 and Fr2 in their native form, were within the characteristic range for trypsin inhibitors of the Kunitz family, between 18 and 22 kDa⁴². A trypsin inhibitor has already been purified from tamarind seeds, but the molecular mass analysed by MALDI-TOF was 21,420 Da, different from the values obtained in this study²⁶. In addition, we observed that pTTI presented two protein fractions, with very close molecular masses and identical amino acid sequences. After reduction and alkylation, the obtained molecular masses were smaller than expected. Nevertheless, the results give further evidence that pTTI is a Kunitz-type inhibitor because it showed about four Cys residues and thus possibly two disulphide bonds⁴². Taken altogether, the results indicate that Fr1 is, possibly, a fragment of Fr2.

Molecular masses of purified pTTI (Fr1 and Fr2) obtained in their native form by the ESI ionisation technique were 19.594 and 19.578 kDa which fall in the range of 18 to 22 kDa, of the Kunitz family trypsin inhibitors⁴². In other study, a different trypsin inhibitor purified from tamarind seeds, also analysed by MALDI-TOF, exhibited a molecular mass of 21,420 Da²⁶.

We observed that pTTI consisted in two protein fractions, with similar molecular masses and identical amino acid sequences. Besides that, molecular masses of these compounds submitted to reduction and alkylation were smaller than expected. These results indicated that Fr1 could be a fragment of Fr2.

As known, the reduction and alkylation reaction made the estimation of the number of Cys present in the Fr2.1 structure possible. The results shown in those assays give further evidence that pTTI is a Kunitz-type inhibitor with about four Cys, which are capable to form two disulphide bonds⁴².

The analysis by MALDI-TOF ISD mode for partial obtainment of the major protein peaks primary structure after reduction and alkylation reinforce that Fr1 and Fr2 are the same molecule, because their amino acid sequences were the same. In the ISD technique, cleavage of the N-Cα bond occurs, resulting in the -c and -z fragments. ISD has been commonly applied for protein sequencing since very small molecules have low m/z region and the analysis becomes incomprehensible due to matrix agglomerates, which makes peptide sequencing difficult²¹. Therefore, the Fr1 and Fr2 sequences of amino acid residues were possible to visualise only above 1000 m/z region of the MALDI TOF mass spectrometer.

In the multiple alignment using BLASTp, we found a tamarind trypsin inhibitor partially sequenced from cDNA. Comparing these sequences, none gaps, high identity, and low e-value were observed. Gaps represent deletions or insertions and the high identities were of 91% for the first two sequences and of 89% for the third one. Thus, the obtained sequence matches those already deposited. Alignment with the other sequences showed greater identity with plant and seed Kunitz trypsin inhibitors. Considering that in this study the purified fraction 1 is the fragment of fraction 2, we suggest that pTTI belongs to the Kunitz family of inhibitors.

Additionally, the kinetic study characterised the enzymatic mechanism of pTTI. The specificity parameters give important information about the inhibitor and the peptidase mechanism of action. pTTI K_i was of 2.9 × 10⁻¹¹mol L⁻¹, and Dixon plot³⁶ indicated that it is a competitive inhibitor⁴⁴. The trypsin inhibitor purified by Araújo et al.²⁶ presented a K_i value of 1.7 × 10⁻⁹mol L⁻¹, with noncompetitive kinetics, demonstrating that it is different from the inhibitor purified in this study, even though they originated from the same seed.

Comparing these two trypsin inhibitors, pTTI is a molecule that has a strong competitive interaction with trypsin and therefore is a candidate inhibitor for the pharmaceutical industry, since inhibitors with this characteristic are commonly noncompetitive⁴⁵. Many drugs have competitive kinetics: statins are a classic example, reversibly competing with 3-hydroxy-3-methyl-glutaryl-coenzyme A (HMG-CoA) for the active site of the enzyme HMG-CoA reductase, inhibiting cholesterol synthesis⁴⁶.

Concerning pTTI IC₅₀ value of 2.7 × 10⁻¹⁰mol L⁻¹, it is possible to compare it to other trypsin inhibitors. Some studies have shown IC₅₀ values of purified trypsin inhibitors, such as EvTI with an IC₅₀ of 2.2 × 10⁻⁸mol L⁻¹ (32), and the Entada scandens seed trypsin inhibitor (ESTI) with 2.6 × 10⁻⁸mol L⁻¹⁴⁷. Thus, compared to other trypsin inhibitors, pTTI is more potent, which favours bioprospecting investigations.

Our results showed pTTI presented resistance to pH extremes, maintaining its anti-trypsin activity in both acid and alkaline media. A reduction in the percentage of inhibition is observed only between pH 6 and 8. This can be explained by pTTI pI, which determines that in this pH range a reduction of the electrostatic repulsion is expected: null loads lead to a reduction in electrostatic repulsion, leading to aggregation of pTTI, explaining the reduction of its anti-trypsin activity in this pH range⁴⁸. pTTI maintained its anti-trypsin activity relatively stable until 80 °C, which characterises a heat-resistant protein. When at 100 °C there is a reduction of its activity, but 67% inhibition of trypsin is still maintained.

The thermo-resistance of a protein is a characteristic of fundamental importance since several biotechnological processes are carried out at high temperatures, such as the synthesis of a new drug, and therefore, the more the inhibitor’s thermo-stability, the more promising it is for a large-scale production⁴⁹.

Two-dimensional electrophoresis of pTTI showed some spots with pI between pH 5 and 6, and one spot in the region of pH 8. These spots might indicate isoforms and can be numerous, what makes the process of identification a challenge⁵⁰.

Functional reassessment of pTTI on CCK and leptin plasma concentrations in obese Wistar rats confirmed Costa et al.²⁵ previous findings with the partially purified inhibitor. In the study of Costa et al.²⁵, the inhibitor also reduced plasma leptin but no changes in plasma CCK were observed. Interestingly, considering the minimum detection level of leptin in this study, untreated obese animals had leptin concentrations at least five times higher than 60% of animals treated with pTTI. These findings corroborate studies in obese humans and rodents, showing that leptin concentrations in obesity can be five times higher than in eutrophy^51,52.

Resistance to leptin with consequent hyperleptinaemia are metabolic conditions observed in obesity⁵³. Lartigue et al.³ demonstrated the importance of the interaction of CCK with leptin and of reducing leptin resistance in obese animals to improve CCK satiety action.

TTI, partially purified in a previous study²⁵, and pTTI, the purified molecule evaluated in this study, did not cause an increase in CCK. However, with the trypsin inhibitor still partially purified, a significant reduction in food consumption, without a decrease in weight gain, was observed in 10 days of experiment, for the obese animals¹². Thus, the hypothesis that the action of TTI and pTTI are related to satiety in obesity is likely dependent on the action of these inhibitors on leptin and not on CCK, as seen for eutrophic animals¹¹.

It is worth mentioning that the reduced sensitivity to CCK in obese animals is considered a factor for the continuity of this metabolic condition since even in physiological CCK doses administered to rats with obesity, there is no satietogenic effect as there is in eutrophic animals⁵⁴. In diet-induced obesity in Sprague–Dawley rats, weight reduction was observed only in 23 days after exogenous CCK-8 was received⁵⁵.

Possibly, in a longer experimental time, the CCK secretagogue isolated or purified from tamarind seeds could present better results regarding appetite control and, consequently, weight loss, considering that TTI decreased food consumption in animals with obesity¹². Moreover, a longer period of treatment, raising or not CCK, by the reduction in CCK resistance promoted by hyperleptinaemia in animals with obesity could culminate in an additive effect on reduced food consumption¹², and consequent reduced weight gain.

Obese animals with reduced leptin concentrations are more sensitive to endogenous leptin and CCK^3,56, so a reduction in plasma leptin is a promising effect of pTTI, as part in the satiety signalling. CCK may also have its signalling effect potentiated by leptin, via the vagus nerve. It is known that high leptin concentrations cause a reduction in the sensitivity of the afferent vagal neurons to CCK³. Therefore, the reduction of leptin resistance seems to be a positive pathway for the satietyogenic effects of CCK in obese animals, favouring a better sensitivity to the effect of CCK.

Carvalho et al.¹², in a study with obese animals with metabolic syndrome (MetS) receiving TTI (25 mg/Kg), demonstrated that this inhibitor reduced TNF-α plasma concentrations, independently of weight loss. It is known that TNF-α is an inflammatory cytokine synthesised mainly by the white adipose tissue, remarkably in individuals with obesity⁵⁷. The results obtained extrapolated TTI action to those related to its anti-trypsin activities and the consequent CCK increase. This suggests that the purified molecule may exhibit an important anti-inflammatory effect and this will be further addressed in other studies.

Thus, the biochemical knowledge of this molecule and its effect on leptin in an experimental model of obesity provides essential and innovative information for a biomolecule of possible biotechnological application, once the knowledge of its amino acid sequence facilitates its biotechnological synthesis.

Funding Statement

This work received the financial support of the Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES), the Conselho Nacional de Desenvolvimento Cientítico e Tecnológico (CNPq) (scholarship) and Fundação de Apoio à Pesquisa do Rio Grande do Norte (FAPERN) Brazilian research supporting agencies [FAPERN/CAPES 006/2014].

Acknowledgements

We thank the support, teaching, and availability of Dr Carlos Bloch Jr. and Dr Maura Vianna Prates, researchers at the Laboratory of Spectrometry Mass of Embrapa-Cernagen. We also thank the collaboration and review of the article by Dr Marcelo Porto Bem-Querer also researcher of the aforementioned laboratory. We thank Dr José de Lima Cardozo Filho for data interpretation and for advising/writing on the methodology section.

Disclosure statement

The authors report no conflicts of interest.