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. 2018 Jun 23;6:115. doi: 10.1186/s40168-018-0501-9

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© The Author(s). 2018

Open Access This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Fig. 4 — Chicken breed and line-specific biomarkers. a LEfSe analysis shows differentially abundant genera as biomarkers determined using Kruskal-Wallis test (P < 0.05) with LDA score > 3.5. b Cladogram representation of the differentially abundant families and genera (only top 50% are plotted here). The root of the cladogram denotes the domain bacteria. The taxonomic levels of phylum and class are labelled, while family and genus are abbreviated, with the colours indicating the breed/line hosting the greatest abundance. The size of each node represents their relative abundance