Crystal structure of diethyl {2,2,2-tri­chloro-1-[2-(1,3-dioxo-2,3-di­hydro-1H-isoindol-2-yl)-4-methyl­pentanamido]­eth­yl}phospho­nate

V S Brovarets; O V Golovchenko; E B Rusanov; J A Rusanova

doi:10.1107/S2056989018008277

. 2018 Jun 8;74(Pt 7):915–917. doi: 10.1107/S2056989018008277

Crystal structure of diethyl {2,2,2-trichloro-1-[2-(1,3-dioxo-2,3-dihydro-1H-isoindol-2-yl)-4-methylpentanamido]ethyl}phosphonate

V S Brovarets ^a, O V Golovchenko ^a, E B Rusanov ^b, J A Rusanova ^c,^*

PMCID: PMC6038616 PMID: 30002885

The crystal structure of the intermediate product of the synthesis of phosphorylated 5-amino-1,3-oxazol-4-ylphosphonic acid derivatives is reported.

Keywords: crystal structure, phtalimide derivatives, phosphorylated compounds

Abstract

In the title phosphorylated compound, C₂₀H₂₆Cl₃N₂O₆P, the phthalimide unit is essentially planar (r.m.s. deviation = 0.0129 Å) and the O atoms of this unit deviate from the mean plane by 0.080 (3) and 0.041 (3) Å. In the crystal, pairs of molecules are linked by N—H⋯O and weak C—H⋯O hydrogen bonds involving the same acceptor atom, forming inversion dimers. In addition, π–π stacking interactions between the phthalimide groups, with a centroid–centroid distance of 3.7736 (13) Å, and further weak C—H⋯O hydrogen bonds connect the inversion dimers into columns along [0 Inline graphic 1].

Chemical context

In early 1950, J. W. Cornforth noted that oxazole derivatives rarely occur in nature and were therefore not promising as new biologically active substances. Studies performed mostly during recent decades have shown that the oxazole ring occurs in a multitude of natural products and it has been widely employed as a component of biologically active compounds in medicinal chemistry (Jin et al., 2006 ▸). Various bacteria and marine organisms produce numerous antibiotics belonging to the oxazole series (Chamberlin et al., 1977 ▸; Bertram et al., 2001 ▸; Jansen et al.,1992 ▸; Moody & Bagley, 1998 ▸). Today, numerous oxazole-based synthetic bioregulators with strong antimicrobial, cytostatic, immune stimulating, neuroleptic, analgesic, and other kinds of biological activity are known (Turchi et al., 1986 ▸; Palmer et al., 2003 ▸). In particular, 5-amino-1,3-oxazole and its derivatives are well recognized for their potent and diverse bioregulation activity. Here we present the crystal structure of the title compound, which is an intermediate product of synthesis of phosphorylated 5-amino-1,3-oxazol-4-ylphosphonic acid derivatives.

Structural commentary

The molecular structure of the title compound is illustrated in Fig. 1 ▸. The phthalimide unit (N1/C1–C8) is essentially planar with an r.m.s. deviation of 0.0129 Å. The oxygen atoms O4 and O5 deviate from the mean plane by 0.080 (3) and 0.041 (3) Å, respectively. In the five-membered 3-pyrroline ring, the C—C bond lengths are equivalent [C1—C8 = 1.487 (3) and C2—C3 = 1.486 (3) Å] and the C—N bond lengths differ slightly [N1—C1 = 1.417 (3) and N1—C2 = 1.398 (3) Å], while the corresponding bond angles are not equal [C1—N1—C9 = 127.97 (18) and C2—N1—C9 = 120.53 (17)°] possibly due to the steric influence of the isobutyl group. The mean C—C bond length in the C3–C8 phenyl ring is 1.387 Å. All bond lengths and angles are within normal ranges (Ng, 1992 ▸; Feeder & Jones, 1996 ▸).

The molecular structure of the title compound with the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level.

In the acetamide moiety, the lone pair of atom N2 is conjugated with the π-system of the C=O group. Thus, the sum of nitrogen valency angles is 359.3° and the C14—N2 bond length of 1.356 (3) Å is intermediate between that for a double and a single bond (1.28 and 1.45 Å, respectively; Allen et al., 1987 ▸). The C15—N2 bond has a typical value for a single bond at 1.442 (3) Å.

The P—O distances in the phosphonate group show typical values for double [P1=O3 1.4616 (15) Å] and single (with bridging O1 and O2) bonds. The P1—O1 and P1—O2 bonds are equivalent within experimental error with values of 1.5670 (15) and 1.5664 (16) Å, respectively. The C15—P1—O1 and C15—P1—O2 bond angles are equivalent [103.45 (9) and 102.73 (9)°, respectively], while angles O1—P1—O3 and O2—P1—O3 are not [109.82 (9) and 116.77 (9)°], which is probably due to molecular packing effects.

The CCl₃ group has typical values for the C—Cl distances (the mean C—Cl bond lengths is 1.773 Å). In general, all bonding parameters and the dimensions of the angles in the title complex are in good agreement with those encountered in related complexes (Bhatti et al., 2010 ▸).

Supramolecular features

In the crystal, pairs of molecules are linked by N2—H1⋯O3ⁱ and C9—H9⋯O3ⁱ hydrogen bonds (Table 1 ▸, Fig. 2 ▸) involving the same acceptor atom, forming inversion dimers. In addition, π–π stacking interactions between the C3–C8 benzene rings of the phthalimide units connect the dimers into columns along [0 Inline graphic 1] with a centroid–centroid distance of 3.7736 (13) Å for Cg⋯Cg(2 − x, −y, 2 − z). Further weak C—H⋯O hydrogen bonds occur within these columns (Fig. 3 ▸).

Table 1. Hydrogen-bond geometry (Å, °).

D—H⋯A	D—H	H⋯A	D⋯A	D—H⋯A
N2—H1⋯O3ⁱ	0.76 (2)	2.09 (2)	2.846 (3)	170 (2)
C9—H9⋯O3ⁱ	1.00	2.47	3.265 (3)	136
C7—H7⋯O6ⁱⁱ	0.95	2.46	3.393 (3)	169

Open in a new tab

Symmetry codes: (i) Inline graphic ; (ii) .

An inversion pair of the title compound, showing the intermolecular N—H⋯O and C—H⋯O hydrogen bonds [symmetry code: (A) 1 − x, 1 − y, 1 − z].

The crystal packing of the title compound viewed along the a axis. Intermolecular N—H⋯O and C—H⋯O hydrogen bonds are shown as dashed lines. Only selected H atoms are shown.

Database survey

A search of the Cambridge Structural Database (Version 5.38; last update November 2016; Groom et al., 2016 ▸) for related compounds with a phthalimide fragment gave 77 hits including the closely related structures of the 2-[2-(1,3-dioxoisoindolin-2-yl)-acetamido]acetic acid, (S)-4-fluoro-N-methyl-2-(1,3-dioxoisoindolin-2-yl)pent-4-enamide dichloromethane solvate and (S)-4-carbamoyl-4-(1,3-dioxoisoindolin-2-yl)butanoic acid (Bhatti et al., 2010 ▸; Shendage et al., 2004 ▸; Otogawa et al., 2015 ▸). All bond lengths and angles in these related compounds are similar to those in the title compound. Differences in the values of the O—P—O bond angles in the phosphonate group and C—N—C angles around the pthalimide nitrogen appear to be due to molecular packing and steric effects.

Synthesis and crystallization

The general procedure for the preparation of the title compound was previously described by Lukashuk et al. (2015 ▸). A mixture of 2-(1,3-dioxo-2,3-dihydro-1H-isoindol-2-yl)-3-methyl-N-(1,2,2,2-tetrachloroethyl)butanamide (0.14 mol), triethyl phosphite (30 mL, 0.17 mol), and dry dioxane (150 mL) was refluxed for 3 h. Colourless crystals suitable for single-crystal X-ray analysis were formed after slowly cooling to room temperature. The analytically pure title compound was obtained by solvent evaporation under reduced pressure to dryness (yield 58.84 g, 80% as a yellow oil). Analysis calculated for C₁₉H₂₆Cl₃N₂O₆P: C, 44.42; H, 4.71; Cl, 20.70; N, 5.45; P, 6.03%; found: C, 44.55; H, 4.86; Cl, 20.82; N, 5.53; P, 6.19%.

The NMR spectra [¹H (500 MHz), ³¹P (202 MHz), ¹³C (125 MHz); s, singlet; br, broad; d, doublet; m, multiplet] were obtained on a Bruker Avance DRX-500 instrument in a solution of DMSO-d ₆, relative to internal TMS or external 85% phosphoric acid. ¹H NMR: 9.32 (½H, d, J = 9.3 Hz, NH), 9.22 (½H, d, J = 9.3 Hz, NH), 7.92–7.88 (4H, m, aromatic), 5.29–5.21 (1H, m, CHP), 4.68–4.61 (1H, m, CH), 4.10–4.00 (4H, m, 2OCH₂CH₃), 2.97–2.90 (1H, m, CH), 1.22–1.15 (6H, m, 2OCH₂CH₃), 1.11–1.05 (3H, m, CH₃), 0.88–0.79 (3H, m, CH₃). ¹³C NMR: 168.61 (d, J = 4.5 Hz, C=O), 167.41 (d, J = 4.5 Hz, C=O), 134.41, 134.36, 130.55, 130.53, 122.85, 122.80 (aromatic), 96.21 (d, J = 14.5 Hz, CCl₃), 96.06 (d, J = 14.5 Hz, CCl₃), 62.30 (d, J = 6.5 Hz, OCH₂CH₃), 62.07 (d, J = 6.5 Hz, OCH₂CH₃), 60.31 (d, J = 158.8 Hz, CP), 60.26 (d, J = 158.6 Hz, CP), 59.31, 59.22 (CH), 25.92, 25.84 (CH), 18.55, 18.50 (CH₃), 18.49, 18.36 (CH₃), 14.97 (d, J = 6.0 Hz, OCH₂CH₃), 14.86 (d, J = 6.0 Hz, OCH₂CH₃). ³¹P NMR: 14.4. 14.2.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. All C—H hydrogen atoms were placed in calculated positions (C—H = 0.98–1.00Å) and refined in the riding-model approximation with U _iso(H) = 1.2–1.5U _eq(H). The H atom bonded to atom N2 was located in a difference-Fourier map and refined isotropically.

Table 2. Experimental details.

Crystal data
Chemical formula	C₂₀H₂₆Cl₃N₂O₆P
M _r	527.75
Crystal system, space group	Triclinic, P
Temperature (K)	173
a, b, c (Å)	8.4601 (2), 10.9425 (3), 13.5321 (4)
α, β, γ (°)	78.188 (2), 88.644 (2), 75.442 (2)
V (Å³)	1186.32 (6)
Z	2
Radiation type	Mo Kα
μ (mm⁻¹)	0.49
Crystal size (mm)	0.24 × 0.19 × 0.08

Data collection
Diffractometer	Bruker SMART APEXII
Absorption correction	Multi-scan (SADABS; Bruker, 2008 ▸)
T _min, T _max	0.87, 0.96
No. of measured, independent and observed [I > 2σ(I)] reflections	16619, 4423, 3306
R _int	0.052
(sin θ/λ)_max (Å⁻¹)	0.606

Refinement
R[F ² > 2σ(F ²)], wR(F ²), S	0.039, 0.090, 1.08
No. of reflections	4423
No. of parameters	293
H-atom treatment	H atoms treated by a mixture of independent and constrained refinement
Δρ_max, Δρ_min (e Å⁻³)	0.37, −0.44

Open in a new tab

Computer programs: APEX2 and SAINT (Bruker, 2008 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2016 (Sheldrick, 2015b ▸), SHELXTL (Sheldrick, 2008 ▸) and publCIF (Westrip, 2010 ▸).

Supplementary Material

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989018008277/lh5875sup1.cif

e-74-00915-sup1.cif^{(619.1KB, cif)}

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989018008277/lh5875Isup2.hkl

e-74-00915-Isup2.hkl^{(352.2KB, hkl)}

Click here for additional data file.^{(8.5KB, cml)}

Supporting information file. DOI: 10.1107/S2056989018008277/lh5875Isup3.cml

CCDC reference: 1847170

Additional supporting information: crystallographic information; 3D view; checkCIF report

supplementary crystallographic information

Crystal data

C₂₀H₂₆Cl₃N₂O₆P	Z = 2
M_r = 527.75	F(000) = 548
Triclinic, P1	D_x = 1.477 Mg m⁻³
a = 8.4601 (2) Å	Mo Kα radiation, λ = 0.71073 Å
b = 10.9425 (3) Å	Cell parameters from 2780 reflections
c = 13.5321 (4) Å	θ = 3.4–45.8°
α = 78.188 (2)°	µ = 0.49 mm⁻¹
β = 88.644 (2)°	T = 173 K
γ = 75.442 (2)°	Plate, colourless
V = 1186.32 (6) Å³	0.24 × 0.19 × 0.08 mm

Open in a new tab

Data collection

Bruker SMART APEXII diffractometer	4423 independent reflections
Radiation source: sealed tube	3306 reflections with I > 2σ(I)
Graphite monochromator	R_int = 0.052
φ and ω scans	θ_max = 25.5°, θ_min = 2.2°
Absorption correction: multi-scan (SADABS; Bruker, 2008)	h = −10→9
T_min = 0.87, T_max = 0.96	k = −13→13
16619 measured reflections	l = −16→16

Open in a new tab

Refinement

Refinement on F²	0 restraints
Least-squares matrix: full	Hydrogen site location: mixed
R[F² > 2σ(F²)] = 0.039	H atoms treated by a mixture of independent and constrained refinement
wR(F²) = 0.090	w = 1/[σ²(F_o²) + (0.0373P)²] where P = (F_o² + 2F_c²)/3
S = 1.08	(Δ/σ)_max = 0.007
4423 reflections	Δρ_max = 0.37 e Å⁻³
293 parameters	Δρ_min = −0.44 e Å⁻³

Open in a new tab

Special details

Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.

Open in a new tab

Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å²)

	x	y	z	U_iso*/U_eq
P1	0.38432 (7)	0.33488 (6)	0.45621 (4)	0.01836 (15)
CL1	0.79937 (8)	0.30683 (7)	0.43532 (5)	0.0447 (2)
CL2	0.85600 (7)	0.07099 (6)	0.58507 (4)	0.03428 (18)
CL3	0.69011 (8)	0.09144 (7)	0.39715 (5)	0.0491 (2)
O1	0.24551 (17)	0.37482 (14)	0.53081 (11)	0.0219 (4)
O2	0.33202 (19)	0.24320 (15)	0.39667 (11)	0.0267 (4)
O3	0.42397 (18)	0.45000 (14)	0.39643 (11)	0.0247 (4)
O4	0.44032 (19)	0.15069 (15)	0.97521 (11)	0.0257 (4)
O5	0.86366 (19)	0.32359 (16)	0.85338 (12)	0.0310 (4)
O6	0.54932 (19)	0.11923 (15)	0.74528 (11)	0.0262 (4)
N1	0.6311 (2)	0.25003 (17)	0.88866 (13)	0.0187 (4)
N2	0.5722 (2)	0.2870 (2)	0.62148 (13)	0.0182 (4)
C1	0.5759 (3)	0.1669 (2)	0.96882 (16)	0.0203 (5)
C2	0.7905 (3)	0.2556 (2)	0.90771 (16)	0.0215 (5)
C3	0.8451 (3)	0.1656 (2)	1.00570 (15)	0.0194 (5)
C4	0.9935 (3)	0.1328 (2)	1.05637 (16)	0.0232 (5)
H4	1.080114	0.170025	1.030700	0.028*
C5	1.0114 (3)	0.0426 (2)	1.14710 (17)	0.0275 (6)
H5	1.112112	0.017187	1.184424	0.033*
C6	0.8833 (3)	−0.0105 (2)	1.18346 (17)	0.0275 (6)
H6	0.898632	−0.071669	1.245561	0.033*
C7	0.7331 (3)	0.0230 (2)	1.13198 (16)	0.0248 (6)
H7	0.645930	−0.013498	1.157508	0.030*
C8	0.7172 (3)	0.1123 (2)	1.04154 (15)	0.0184 (5)
C9	0.5453 (3)	0.3201 (2)	0.79368 (15)	0.0188 (5)
H9	0.599930	0.389770	0.763816	0.023*
C10	0.3643 (3)	0.3834 (2)	0.80426 (16)	0.0219 (5)
H10A	0.320062	0.436484	0.737746	0.026*
H10B	0.305581	0.314522	0.821981	0.026*
C11	0.3267 (3)	0.4684 (2)	0.88262 (17)	0.0252 (6)
H11	0.361031	0.412380	0.950673	0.030*
C12	0.4201 (3)	0.5725 (2)	0.86449 (19)	0.0360 (7)
H12A	0.537536	0.532229	0.864970	0.054*
H12B	0.386046	0.630024	0.798851	0.054*
H12C	0.396886	0.622302	0.917967	0.054*
C13	0.1436 (3)	0.5270 (3)	0.8824 (2)	0.0418 (7)
H13A	0.086390	0.458013	0.894246	0.063*
H13B	0.118619	0.576531	0.936024	0.063*
H13C	0.107779	0.584253	0.816908	0.063*
C14	0.5585 (3)	0.2307 (2)	0.71927 (15)	0.0180 (5)
C15	0.5510 (3)	0.2253 (2)	0.54002 (15)	0.0178 (5)
H15	0.512342	0.147068	0.570548	0.021*
C16	0.7154 (3)	0.1776 (2)	0.49071 (16)	0.0269 (6)
C17	0.1635 (3)	0.2852 (2)	0.59219 (18)	0.0275 (6)
H17A	0.238670	0.226629	0.646535	0.033*
H17B	0.127708	0.232492	0.550083	0.033*
C18	0.0190 (3)	0.3634 (2)	0.63664 (18)	0.0342 (6)
H18A	−0.039138	0.305605	0.678612	0.051*
H18B	0.055967	0.414975	0.678234	0.051*
H18C	−0.054538	0.420814	0.582181	0.051*
C19	0.2312 (3)	0.2932 (3)	0.30282 (19)	0.0380 (7)
H19A	0.227578	0.385415	0.277641	0.046*
H19B	0.118185	0.285406	0.315925	0.046*
C20	0.3037 (3)	0.2176 (3)	0.22655 (19)	0.0418 (7)
H20A	0.237677	0.249970	0.163708	0.063*
H20B	0.415264	0.226244	0.213626	0.063*
H20C	0.306207	0.126542	0.251793	0.063*
H1	0.577 (3)	0.357 (2)	0.6099 (17)	0.017 (7)*

Open in a new tab

Atomic displacement parameters (Å²)

	U¹¹	U²²	U³³	U¹²	U¹³	U²³
P1	0.0179 (3)	0.0187 (3)	0.0166 (3)	−0.0024 (3)	−0.0006 (2)	−0.0022 (2)
CL1	0.0242 (4)	0.0651 (5)	0.0359 (4)	−0.0130 (3)	0.0039 (3)	0.0116 (3)
CL2	0.0240 (3)	0.0416 (4)	0.0269 (3)	0.0092 (3)	−0.0043 (2)	−0.0045 (3)
CL3	0.0398 (4)	0.0655 (5)	0.0372 (4)	0.0148 (4)	−0.0066 (3)	−0.0338 (4)
O1	0.0190 (8)	0.0186 (9)	0.0250 (8)	−0.0024 (7)	0.0047 (7)	−0.0012 (7)
O2	0.0290 (9)	0.0254 (9)	0.0255 (9)	−0.0042 (8)	−0.0092 (7)	−0.0071 (7)
O3	0.0270 (9)	0.0225 (9)	0.0217 (8)	−0.0073 (8)	0.0016 (7)	0.0035 (7)
O4	0.0248 (10)	0.0273 (10)	0.0250 (9)	−0.0107 (8)	−0.0007 (7)	−0.0001 (7)
O5	0.0290 (10)	0.0377 (11)	0.0250 (9)	−0.0150 (9)	0.0010 (7)	0.0046 (8)
O6	0.0407 (11)	0.0176 (9)	0.0199 (8)	−0.0081 (8)	0.0048 (7)	−0.0024 (7)
N1	0.0197 (10)	0.0210 (11)	0.0146 (9)	−0.0060 (9)	−0.0013 (7)	−0.0007 (8)
N2	0.0240 (11)	0.0159 (12)	0.0146 (10)	−0.0062 (10)	−0.0001 (8)	−0.0015 (8)
C1	0.0270 (14)	0.0144 (12)	0.0200 (12)	−0.0052 (11)	0.0004 (10)	−0.0044 (10)
C2	0.0240 (13)	0.0225 (13)	0.0191 (12)	−0.0061 (11)	0.0027 (10)	−0.0061 (10)
C3	0.0249 (13)	0.0168 (12)	0.0172 (11)	−0.0051 (11)	0.0020 (9)	−0.0057 (9)
C4	0.0241 (13)	0.0225 (13)	0.0246 (13)	−0.0064 (11)	−0.0021 (10)	−0.0072 (10)
C5	0.0293 (14)	0.0254 (14)	0.0262 (13)	−0.0015 (12)	−0.0088 (11)	−0.0070 (11)
C6	0.0384 (15)	0.0223 (14)	0.0179 (12)	−0.0038 (12)	−0.0045 (11)	0.0003 (10)
C7	0.0318 (14)	0.0239 (14)	0.0199 (12)	−0.0100 (11)	0.0031 (10)	−0.0041 (10)
C8	0.0237 (13)	0.0161 (12)	0.0154 (11)	−0.0045 (10)	0.0007 (9)	−0.0036 (9)
C9	0.0248 (13)	0.0175 (12)	0.0128 (11)	−0.0055 (10)	−0.0022 (9)	0.0008 (9)
C10	0.0226 (13)	0.0207 (13)	0.0210 (12)	−0.0023 (10)	−0.0027 (9)	−0.0042 (10)
C11	0.0324 (14)	0.0224 (14)	0.0197 (12)	−0.0042 (12)	0.0003 (10)	−0.0054 (10)
C12	0.0431 (17)	0.0289 (15)	0.0406 (16)	−0.0090 (13)	0.0021 (13)	−0.0177 (12)
C13	0.0337 (16)	0.0431 (17)	0.0513 (18)	−0.0047 (14)	0.0105 (13)	−0.0228 (14)
C14	0.0166 (12)	0.0189 (13)	0.0170 (11)	−0.0032 (10)	0.0007 (9)	−0.0016 (10)
C15	0.0194 (12)	0.0176 (12)	0.0158 (11)	−0.0036 (10)	0.0005 (9)	−0.0037 (9)
C16	0.0218 (13)	0.0369 (15)	0.0180 (12)	−0.0002 (11)	0.0011 (10)	−0.0056 (11)
C17	0.0210 (13)	0.0277 (14)	0.0289 (13)	−0.0060 (11)	0.0038 (10)	0.0046 (11)
C18	0.0225 (14)	0.0422 (17)	0.0309 (14)	−0.0018 (12)	0.0076 (11)	−0.0004 (12)
C19	0.0327 (15)	0.0481 (18)	0.0337 (15)	−0.0071 (13)	−0.0117 (12)	−0.0123 (13)
C20	0.0566 (19)	0.0424 (18)	0.0311 (15)	−0.0186 (15)	−0.0055 (13)	−0.0096 (13)

Open in a new tab

Geometric parameters (Å, º)

P1—O3	1.4616 (15)	C9—C14	1.526 (3)
P1—O2	1.5564 (16)	C9—C10	1.531 (3)
P1—O1	1.5670 (15)	C9—H9	1.0000
P1—C15	1.839 (2)	C10—C11	1.526 (3)
CL1—C16	1.764 (3)	C10—H10A	0.9900
CL2—C16	1.780 (2)	C10—H10B	0.9900
CL3—C16	1.772 (2)	C11—C12	1.520 (3)
O1—C17	1.454 (3)	C11—C13	1.520 (3)
O2—C19	1.474 (3)	C11—H11	1.0000
O4—C1	1.202 (3)	C12—H12A	0.9800
O5—C2	1.209 (3)	C12—H12B	0.9800
O6—C14	1.220 (2)	C12—H12C	0.9800
N1—C2	1.398 (3)	C13—H13A	0.9800
N1—C1	1.417 (3)	C13—H13B	0.9800
N1—C9	1.459 (2)	C13—H13C	0.9800
N2—C14	1.356 (3)	C15—C16	1.545 (3)
N2—C15	1.442 (3)	C15—H15	1.0000
N2—H1	0.76 (2)	C17—C18	1.496 (3)
C1—C8	1.487 (3)	C17—H17A	0.9900
C2—C3	1.486 (3)	C17—H17B	0.9900
C3—C4	1.374 (3)	C18—H18A	0.9800
C3—C8	1.387 (3)	C18—H18B	0.9800
C4—C5	1.394 (3)	C18—H18C	0.9800
C4—H4	0.9500	C19—C20	1.480 (4)
C5—C6	1.389 (3)	C19—H19A	0.9900
C5—H5	0.9500	C19—H19B	0.9900
C6—C7	1.392 (3)	C20—H20A	0.9800
C6—H6	0.9500	C20—H20B	0.9800
C7—C8	1.387 (3)	C20—H20C	0.9800
C7—H7	0.9500

O3—P1—O2	116.77 (9)	C13—C11—H11	108.1
O3—P1—O1	109.82 (9)	C10—C11—H11	108.1
O2—P1—O1	107.96 (9)	C11—C12—H12A	109.5
O3—P1—C15	115.02 (10)	C11—C12—H12B	109.5
O2—P1—C15	102.73 (9)	H12A—C12—H12B	109.5
O1—P1—C15	103.45 (9)	C11—C12—H12C	109.5
C17—O1—P1	123.88 (14)	H12A—C12—H12C	109.5
C19—O2—P1	121.74 (15)	H12B—C12—H12C	109.5
C2—N1—C1	111.45 (18)	C11—C13—H13A	109.5
C2—N1—C9	120.53 (17)	C11—C13—H13B	109.5
C1—N1—C9	127.97 (18)	H13A—C13—H13B	109.5
C14—N2—C15	121.5 (2)	C11—C13—H13C	109.5
C14—N2—H1	118.0 (17)	H13A—C13—H13C	109.5
C15—N2—H1	119.8 (17)	H13B—C13—H13C	109.5
O4—C1—N1	125.4 (2)	O6—C14—N2	122.8 (2)
O4—C1—C8	129.3 (2)	O6—C14—C9	122.46 (19)
N1—C1—C8	105.22 (18)	N2—C14—C9	114.63 (19)
O5—C2—N1	124.7 (2)	N2—C15—C16	111.14 (18)
O5—C2—C3	128.9 (2)	N2—C15—P1	107.70 (14)
N1—C2—C3	106.43 (19)	C16—C15—P1	116.87 (14)
C4—C3—C8	122.5 (2)	N2—C15—H15	106.9
C4—C3—C2	129.6 (2)	C16—C15—H15	106.9
C8—C3—C2	107.91 (19)	P1—C15—H15	106.9
C3—C4—C5	117.0 (2)	C15—C16—CL1	111.57 (16)
C3—C4—H4	121.5	C15—C16—CL3	110.61 (16)
C5—C4—H4	121.5	CL1—C16—CL3	109.04 (12)
C6—C5—C4	120.6 (2)	C15—C16—CL2	108.95 (14)
C6—C5—H5	119.7	CL1—C16—CL2	108.53 (13)
C4—C5—H5	119.7	CL3—C16—CL2	108.04 (13)
C5—C6—C7	122.2 (2)	O1—C17—C18	107.44 (19)
C5—C6—H6	118.9	O1—C17—H17A	110.2
C7—C6—H6	118.9	C18—C17—H17A	110.2
C8—C7—C6	116.6 (2)	O1—C17—H17B	110.2
C8—C7—H7	121.7	C18—C17—H17B	110.2
C6—C7—H7	121.7	H17A—C17—H17B	108.5
C7—C8—C3	121.0 (2)	C17—C18—H18A	109.5
C7—C8—C1	130.0 (2)	C17—C18—H18B	109.5
C3—C8—C1	108.93 (18)	H18A—C18—H18B	109.5
N1—C9—C14	110.41 (17)	C17—C18—H18C	109.5
N1—C9—C10	114.38 (17)	H18A—C18—H18C	109.5
C14—C9—C10	108.24 (17)	H18B—C18—H18C	109.5
N1—C9—H9	107.9	O2—C19—C20	108.7 (2)
C14—C9—H9	107.9	O2—C19—H19A	109.9
C10—C9—H9	107.9	C20—C19—H19A	109.9
C11—C10—C9	115.53 (18)	O2—C19—H19B	109.9
C11—C10—H10A	108.4	C20—C19—H19B	109.9
C9—C10—H10A	108.4	H19A—C19—H19B	108.3
C11—C10—H10B	108.4	C19—C20—H20A	109.5
C9—C10—H10B	108.4	C19—C20—H20B	109.5
H10A—C10—H10B	107.5	H20A—C20—H20B	109.5
C12—C11—C13	111.1 (2)	C19—C20—H20C	109.5
C12—C11—C10	111.88 (19)	H20A—C20—H20C	109.5
C13—C11—C10	109.45 (19)	H20B—C20—H20C	109.5
C12—C11—H11	108.1

O3—P1—O1—C17	172.13 (16)	N1—C1—C8—C3	1.9 (2)
O2—P1—O1—C17	43.80 (18)	C2—N1—C9—C14	97.2 (2)
C15—P1—O1—C17	−64.61 (18)	C1—N1—C9—C14	−79.8 (3)
O3—P1—O2—C19	−37.1 (2)	C2—N1—C9—C10	−140.4 (2)
O1—P1—O2—C19	87.18 (18)	C1—N1—C9—C10	42.6 (3)
C15—P1—O2—C19	−163.92 (17)	N1—C9—C10—C11	51.7 (3)
C2—N1—C1—O4	174.9 (2)	C14—C9—C10—C11	175.29 (19)
C9—N1—C1—O4	−7.8 (4)	C9—C10—C11—C12	54.9 (3)
C2—N1—C1—C8	−2.6 (2)	C9—C10—C11—C13	178.5 (2)
C9—N1—C1—C8	174.64 (19)	C15—N2—C14—O6	9.9 (3)
C1—N1—C2—O5	−176.7 (2)	C15—N2—C14—C9	−166.63 (18)
C9—N1—C2—O5	5.8 (3)	N1—C9—C14—O6	39.6 (3)
C1—N1—C2—C3	2.2 (2)	C10—C9—C14—O6	−86.3 (2)
C9—N1—C2—C3	−175.22 (17)	N1—C9—C14—N2	−143.88 (19)
O5—C2—C3—C4	−3.4 (4)	C10—C9—C14—N2	90.2 (2)
N1—C2—C3—C4	177.7 (2)	C14—N2—C15—C16	−108.9 (2)
O5—C2—C3—C8	178.0 (2)	C14—N2—C15—P1	121.90 (19)
N1—C2—C3—C8	−0.9 (2)	O3—P1—C15—N2	71.35 (17)
C8—C3—C4—C5	−0.2 (3)	O2—P1—C15—N2	−160.69 (14)
C2—C3—C4—C5	−178.7 (2)	O1—P1—C15—N2	−48.41 (16)
C3—C4—C5—C6	−0.1 (3)	O3—P1—C15—C16	−54.52 (19)
C4—C5—C6—C7	0.1 (4)	O2—P1—C15—C16	73.43 (18)
C5—C6—C7—C8	0.3 (3)	O1—P1—C15—C16	−174.29 (16)
C6—C7—C8—C3	−0.6 (3)	N2—C15—C16—CL1	−62.8 (2)
C6—C7—C8—C1	179.4 (2)	P1—C15—C16—CL1	61.4 (2)
C4—C3—C8—C7	0.6 (3)	N2—C15—C16—CL3	175.64 (15)
C2—C3—C8—C7	179.4 (2)	P1—C15—C16—CL3	−60.2 (2)
C4—C3—C8—C1	−179.39 (19)	N2—C15—C16—CL2	57.0 (2)
C2—C3—C8—C1	−0.6 (2)	P1—C15—C16—CL2	−178.83 (11)
O4—C1—C8—C7	4.5 (4)	P1—O1—C17—C18	−169.00 (15)
N1—C1—C8—C7	−178.1 (2)	P1—O2—C19—C20	133.89 (19)
O4—C1—C8—C3	−175.5 (2)

Open in a new tab

Hydrogen-bond geometry (Å, º)

D—H···A	D—H	H···A	D···A	D—H···A
N2—H1···O3ⁱ	0.76 (2)	2.09 (2)	2.846 (3)	170 (2)
C9—H9···O3ⁱ	1.00	2.47	3.265 (3)	136
C7—H7···O6ⁱⁱ	0.95	2.46	3.393 (3)	169

Open in a new tab

Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x+1, −y, −z+2.

References

Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–S19.
Bertram, A. & Pattenden, G. (2001). Synlett, pp. 1873–1874.
Bhatti, M. H., Yunus, U., Imtiaz-ud-Din, Shams-ul-Islam, S. & Wong, W.-Y. (2010). Acta Cryst. E66, o2969. [DOI] [PMC free article] [PubMed]
Bruker (2008). APEX2, SAINT and SADABS. Bruker AXS, Inc., Madison, Wisconsin, USA.
Chamberlin, J. W. & Chen, S. J. (1977). J. Antibiot. 30, 197–201. [DOI] [PubMed]
Feeder, N. & Jones, W. (1996). Acta Cryst. C52, 1516–1520.
Groom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst B72, 171–179. [DOI] [PMC free article] [PubMed]
Jansen, R., Kunze, B., Reichenbach, H., Jurkiewicz, E., Hunsmann, G. & Höfle, G. (1992). Liebigs Ann. Chem. pp. 357–359.
Jin, Z. (2006). Nat. Prod. Rep. 23, 464–496. [DOI] [PubMed]
Lukashuk, O. I., Abdurakhmanova, E. R., Kondratyuk, K. M., Golovchenko, O. V., Khokhlov, K. V., Brovarets, V. S. & Kukhar, V. P. (2015). RSC Adv. 5, 11198–11206.
Moody, C. J. & Bagley, M. C. (1998). J. Chem. Soc. Perkin Trans. 1, pp. 601–608.
Ng, S. W. (1992). Acta Cryst. C48, 1694–1695.
Otogawa, K., Ishikawa, K., Shiro, M. & Asahi, T. (2015). Acta Cryst. E71, 107–109. [DOI] [PMC free article] [PubMed]
Palmer, D. C. (2003). Oxazoles: Synthesis, Reactions, and Spectroscopy, Ed., Hoboken: Wiley, part A, p. 255.
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]
Sheldrick, G. M. (2015a). Acta Cryst. A71, 3–8.
Sheldrick, G. M. (2015b). Acta Cryst. C71, 3–8.
Shendage, D. M., Fröhlich, R. & Haufe, G. (2004). Org. Lett. 6, 3675–3678. [DOI] [PubMed]
Turchi, I. J. (1986). Editor. Oxazoles. New York: Wiley.
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Supplementary Materials

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989018008277/lh5875sup1.cif

e-74-00915-sup1.cif^{(619.1KB, cif)}

Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989018008277/lh5875Isup2.hkl

e-74-00915-Isup2.hkl^{(352.2KB, hkl)}

Click here for additional data file.^{(8.5KB, cml)}

Supporting information file. DOI: 10.1107/S2056989018008277/lh5875Isup3.cml

CCDC reference: 1847170

Additional supporting information: crystallographic information; 3D view; checkCIF report

[bb1] Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–S19.

[bb2] Bertram, A. & Pattenden, G. (2001). Synlett, pp. 1873–1874.

[bb3] Bhatti, M. H., Yunus, U., Imtiaz-ud-Din, Shams-ul-Islam, S. & Wong, W.-Y. (2010). Acta Cryst. E66, o2969. [DOI] [PMC free article] [PubMed]

[bb4] Bruker (2008). APEX2, SAINT and SADABS. Bruker AXS, Inc., Madison, Wisconsin, USA.

[bb5] Chamberlin, J. W. & Chen, S. J. (1977). J. Antibiot. 30, 197–201. [DOI] [PubMed]

[bb6] Feeder, N. & Jones, W. (1996). Acta Cryst. C52, 1516–1520.

[bb20] Groom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst B72, 171–179. [DOI] [PMC free article] [PubMed]

[bb7] Jansen, R., Kunze, B., Reichenbach, H., Jurkiewicz, E., Hunsmann, G. & Höfle, G. (1992). Liebigs Ann. Chem. pp. 357–359.

[bb8] Jin, Z. (2006). Nat. Prod. Rep. 23, 464–496. [DOI] [PubMed]

[bb9] Lukashuk, O. I., Abdurakhmanova, E. R., Kondratyuk, K. M., Golovchenko, O. V., Khokhlov, K. V., Brovarets, V. S. & Kukhar, V. P. (2015). RSC Adv. 5, 11198–11206.

[bb10] Moody, C. J. & Bagley, M. C. (1998). J. Chem. Soc. Perkin Trans. 1, pp. 601–608.

[bb11] Ng, S. W. (1992). Acta Cryst. C48, 1694–1695.

[bb12] Otogawa, K., Ishikawa, K., Shiro, M. & Asahi, T. (2015). Acta Cryst. E71, 107–109. [DOI] [PMC free article] [PubMed]

[bb13] Palmer, D. C. (2003). Oxazoles: Synthesis, Reactions, and Spectroscopy, Ed., Hoboken: Wiley, part A, p. 255.

[bb14] Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. [DOI] [PubMed]

[bb15] Sheldrick, G. M. (2015a). Acta Cryst. A71, 3–8.

[bb16] Sheldrick, G. M. (2015b). Acta Cryst. C71, 3–8.

[bb17] Shendage, D. M., Fröhlich, R. & Haufe, G. (2004). Org. Lett. 6, 3675–3678. [DOI] [PubMed]

[bb18] Turchi, I. J. (1986). Editor. Oxazoles. New York: Wiley.

[bb19] Westrip, S. P. (2010). J. Appl. Cryst. 43, 920–925.

PERMALINK

Crystal structure of diethyl {2,2,2-trichloro-1-[2-(1,3-dioxo-2,3-dihydro-1H-isoindol-2-yl)-4-methylpentanamido]ethyl}phosphonate

V S Brovarets

O V Golovchenko

E B Rusanov

J A Rusanova

Abstract

Chemical context

Structural commentary

Figure 1.