The l-shaped cation in the title salt arises from a nearly orthogonal disposition of the piperidin-1-ium ring with respect to the piperidin-1-ium group. Supramolecular chains arise in the crystal as a result of O—H⋯O and N—H⋯O hydrogen bonding.
Keywords: crystal structure, Mefloquine, salt, hydrogen bonding, Hirshfeld surface analysis
Abstract
In the racemic title molecular salt, C17H17F6N2O+·C2ClF2O3 − (systematic name: 2-{[2,8-bis(trifluoromethyl)quinolin-4-yl](hydroxy)methyl}piperidin-1-ium chlorodifluoroacetate), the cation, which is protonated at the piperidine N atom, has the shape of the letter, L, with the piperidin-1-ium group being approximately orthogonal to the quinolinyl residue [the Cq—Cm—Cm–Na (q = quinolinyl; m = methine; a = ammonium) torsion angle is 177.79 (18)°]. An intramolecular, charge-assisted ammonium-N—H⋯O(hydroxyl) hydrogen bond ensures the hydroxy-O and ammonium-N atoms lie to the same side of the molecule [Oh—Cm—Cm—Na (h = hydroxyl) = −59.7 (2)°]. In the crystal, charge-assisted hydroxyl-O—H⋯O−(carboxylate) and ammonium-N+—H⋯O−(carboxylate) hydrogen bonds generate a supramolecular chain along [010]; the chain is consolidated by C—H⋯O interactions. Links between chains to form supramolecular layers are of the type C—Cl⋯π(quinolinyl-C6) and the layers thus formed stack along the a-axis direction without directional interactions between them. The analysis of the calculated Hirshfeld surface points to the dominance of F⋯H contacts to the surface (40.8%) with significant contributions from F⋯F (10.5%) and C⋯F (7.0%) contacts.
Chemical context
Practical interest in compounds related to the title salt relates to the biological activity of Mefloquine ([2,8-bis(trifluoromethyl)quinolin-4-yl]-piperidin-2-ylmethanol). This arises when the racemic compound is reacted with HCl: the resulting salt, [(R*,S*)-(2-{[2,8-bis(trifluoromethyl)quinolin-4-yl](hydroxymethyl)piperidin-1-ium chloride is an anti-malarial drug, being effective against the causative agent, Plasmodium falciparum (Maguire et al., 2006 ▸). Subsequently, diverse pharmaceutical potential has been disclosed, namely, as anti-bacterial (Mao et al., 2007 ▸), anti-mycobacterial (Gonçalves et al., 2012 ▸) and as anti-cancer agents (Rodrigues et al., 2014 ▸). With the preceding facts in mind, it is not surprising that crystallography has played a key role in establishing the molecular structures of this class of compound. Of particular crystallographic interest has been the characterization of a pair of kryptoracemates of mefloquinium salts in recent years (Jotani et al., 2016 ▸; Wardell, Wardell et al., 2016 ▸). The phenomenon of kryptoracemic behaviour has been reviewed in the last decade for both organic and coordination compounds (Fábián & Brock, 2010 ▸; Bernal & Watkins, 2015 ▸). Briefly, for a material to be classified as kryptoracemic, it must satisfy the following crystallographic criteria: the space group must be one of the 65 Sohncke space groups, i.e. lacking an inversion centre, rotatory inversion axis, glide plane or a mirror plane, and Z′ would usually be greater than 1 (unless the molecule lies on a rotation axis). In a continuation of structural studies of Mefloquine derivatives (Wardell et al., 2011 ▸; Wardell, Jotani et al., 2016 ▸), herein the crystal and molecular structures of the title salt, (I), isolated from the 1:1 crystallization of racemic Mefloquine and chlorodifluoroacetic acid are described along with an analysis of its calculated Hirshfeld surface.
Structural commentary
The ions comprising the asymmetric unit of (I) are shown in Fig. 1 ▸. The illustrated cation has two chiral centres, namely R at C12 and S at C13, i.e. it is the [(+)-erythro-mefloquinium] isomer. However, it should be noted that the centrosymmetric unit cell has equal numbers of the other S-,R- enantiomer, indicating that no resolution occurred during the crystallization experiment as has been observed in some of the earlier studies (see Chemical context). The pattern of hydrogen-bonding interactions involving the ammonium-N—H H atoms (see Supramolecular features) provides confirmation of protonation at the N2 atom during crystallization and, therefore, the formation of a piperidin-1-ium cation. At the same time, delocalization of the π-electron density over the carboxylate residue is confirmed by the equivalence of the C18—O2, O3 bond lengths, i.e. 2 × 1.238 (3) Å.
Figure 1.
The molecular structures of the ions comprising the asymmetric unit of (I) showing the atom-labelling scheme and displacement ellipsoids at the 70% probability level. The dashed line signifies the N—H⋯O hydrogen bond.
The quinolinyl residue is not strictly planar with the r.m.s. deviation for the ten fitted non-H atoms being 0.0399 Å. This is also reflected in the dihedral angle formed between the (N1,C1–C4,C9) and (C4–C9) rings of 3.95 (15) Å. This aspect of the structure notwithstanding, the hydroxyl-O and ammonium-N atoms lie to opposite sides of the plane through the quinolinyl residue. This is seen in the value of the C2—C3—C12—O1 torsion angle of −20.3 (3)° cf. with that of 177.79 (18)° for C3—C12—C13—N2. The latter angle indicates the piperidin-1-ium residue is almost perpendicular to the quinolinyl residue with the methylene-C17 group orientated towards the fused-ring system as seen in the gauche C3—C12—C13—C17 torsion angle of −60.7 (3)°. The observed conformation, whereby the hydroxy-O and ammonium-N atoms lie to the same side of the molecule [the O1—C12—C13—N2 torsion angle is −59.7 (2)°], is stabilized by an intramolecular, charge-assisted ammonium-N2+—H⋯O1(hydroxyl) hydrogen bond, Table 1 ▸. In general terms, the shape of the cation is based on the letter, L.
Table 1. Hydrogen-bond geometry (Å, °).
Cg1 is the centroid of the (C4–C9) ring.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N2—H2N⋯O1 | 0.89 (2) | 2.34 (2) | 2.722 (3) | 106 (2) |
| O1—H1O⋯O3i | 0.84 (2) | 1.83 (2) | 2.668 (3) | 178 (3) |
| N2—H1N⋯O2 | 0.89 (2) | 1.92 (2) | 2.808 (3) | 177 (2) |
| N2—H2N⋯O2ii | 0.89 (2) | 2.05 (2) | 2.776 (3) | 138 (2) |
| C5—H5⋯O3 | 0.95 | 2.45 | 3.367 (3) | 162 |
| C14—H14B⋯O1iii | 0.99 | 2.39 | 3.362 (3) | 166 |
| C19—Cl1⋯Cg1iv | 1.74 (1) | 3.91 (1) | 4.208 (3) | 88 (1) |
| C10—F3⋯Cg1i | 1.33 (1) | 3.09 (1) | 3.762 (3) | 110 (1) |
Symmetry codes: (i)
; (ii)
; (iii)
; (iv)
.
The anion in (I) adopts a conformation where the Cl1 atom lies to one side of the O2C2 plane [r.m.s. deviation = 0.0089 Å], with the O2—C18—C19—Cl1 torsion angle being −93.3 (2)°, and the F7 and F8 atoms lying to the other side, the O2—C18—C19—F7, F8 torsion angles = 28.8 (3) and 146.3 (2)°, respectively. The conformation of the CClF2 residue in (I) has been observed in the structure of the acid (Schilling & Mootz, 1995 ▸), the acid monohydrate and tetrahydrate (Dahlems et al., 1996 ▸) and in salts, e.g. with mono-protonated 1,4-diazabicyclo[2.2.2]octane (dabco), i.e. 4-aza-1-azoniabicyclo[2.2.2]octane, for which three independent ion pairs comprise the asymmetric unit (Shi et al., 2013 ▸).
Supramolecular features
The presence of charge-assisted hydroxyl-O—H⋯O−(carboxylate) and ammonium-N+—H⋯O−(carboxylate) hydrogen bonding features prominently in the molecular packing of (I) and leads to a supramolecular chain propagating along the b-axis direction, Fig. 1 ▸ a and Table 1 ▸. The ammonium-N+—H⋯O−(carboxylate) hydrogen bonds link two cations and two anions about a centre of inversion to form eight-membered {⋯HNH⋯O}2 synthons, Fig. 2 ▸ b. These are linked into a supramolecular chain via hydroxyl-O—H⋯O−(carboxylate) hydrogen bonding, which leads to 18-membered {⋯OCO⋯HNC2OH}2 synthons, Fig. 2 ▸ b. In this scheme, the carboxylate-O2 atom forms two hydrogen bonds. Additional stability to the supramolecular chain is afforded by quinolinyl-C—H⋯O(carboxylate) and methylene-C—H⋯O(hydroxyl) interactions, Table 1 ▸. The chains are connected into layers via C—Cl⋯π(C4–C9) interactions, Table 1 ▸. The layers stack along the a-axis direction without directional interactions between them, Fig. 2 ▸ c.
Figure 2.
Molecular packing in (I): (a) The supramolecular chain along the b-axis direction, being sustained by O—H⋯O and N—H⋯O hydrogen bonding with non-participating H atoms omitted, (b) a simplified view of the chain highlighting the formation of the eight- and 18-membered supramolecular synthons and (c) a view of the unit-cell contents shown in projection down the b-axis direction. The O—H⋯O, N—H⋯O and Cl⋯π interactions are shown as orange, blue and purple dashed lines, respectively.
Hirshfeld surface analysis
The Hirshfeld surface calculations for the title salt (I) were performed in accord with an earlier publication on a related salt (Jotani et al., 2016 ▸) and satisfactorily describe the additional influence of interatomic halogen–halogen, halogen–hydrogen and halogen⋯π contacts upon the packing. In addition to bright-red spots on the Hirshfeld surfaces mapped over d norm in Fig. 3 ▸ a and b (labelled 1–3), corresponding to intermolecular O—H⋯O, N—H⋯O and C—H⋯O interactions, Table 1 ▸, the presence of tiny faint-red spots, having labels S1–S4 in Fig. 3 ▸ c and d, indicate the influence of short interatomic H⋯H, F⋯H/H⋯F and F⋯F contacts [Table 2 ▸; calculated in CrystalExplorer3.1 (Wolff et al., 2012 ▸)]. On the Hirshfeld surfaces mapped over electrostatic potential in Fig. 4 ▸, the donors and acceptors of intermolecular hydrogen bonds are illustrated through the appearance of blue and red regions corresponding to positive and negative electrostatic potential, respectively. The presence of intermolecular side-on C—halogen⋯π interactions namely C19—Cl1⋯π(C4–C9) and C10—F3⋯π(C4–C9), Table 1 ▸, are evident from the Hirshfeld surfaces mapped with shape-index property illustrated in Fig. 5 ▸.
Figure 3.
Views of the Hirshfeld surface of (I) mapped over d norm in the range −0.077 to +1.575 au, highlighting: (a) and (b) intermolecular hydrogen bonds (with labels 1–3) by black-dashed lines, and (c) and (d) short interatomic H⋯H, F⋯H and F⋯F contacts (with labels S1–S4) by sky-blue, red and black dashed lines, respectively.
Table 2. Summary of short interatomic contacts (Å) in (I).
| Contact | Distance | Symmetry operation |
|---|---|---|
| H7⋯H15B | 2.08 |
x, − y, − + z
|
| F1⋯H16B | 2.56 | 2 − x, 1 − y, 1 − z |
| F6⋯H15B | 2.58 |
x, − y, − + z
|
| F4⋯F5 | 2.903 (2) | 2 − x, + y, 1 − z
|
Figure 4.
Two views of the Hirshfeld surface of (I) mapped over the electrostatic potential in the range −0.133 to + 0.219 au. The red and blue regions represent negative and positive electrostatic potentials, respectively.
Figure 5.
Two views of Hirshfeld surface of (I) mapped over the shape-index property highlighting (a) C—Cl⋯π and (b) C—F⋯π contacts by yellow and black dotted lines, respectively
The overall two-dimensional fingerprint plot and those delineated (McKinnon et al., 2007 ▸) into H⋯H, O⋯H/H⋯O, F⋯H/H⋯F, F⋯F, C⋯F/F⋯C, Cl⋯H/H⋯Cl and C⋯Cl/Cl⋯C contacts are illustrated in Fig. 6 ▸; the percentage contributions from the different interatomic contacts to the Hirshfeld surface are summarized in Table 3 ▸. The formation of a salt between the piperidinium cation and carboxylate anion through the charge-assisted hydrogen bonds and the presence of a number of H⋯Cl, F and O contacts result in the relatively small, i.e. 11.9%, contribution from H⋯H contacts to the Hirshfeld surface. Conversely, the relative high number of fluorine atoms lying on the surfaces of both the cation and anion, largely participating in F⋯H contacts, gives rise to their providing the greatest contribution, i.e. 40.8%, to the surface.
Figure 6.
The full two-dimensional fingerprint plot for (I) and those delineated into H⋯H, O⋯H/H⋯O, F⋯H/H⋯F, F⋯F, C⋯F/F⋯C, Cl⋯H/H⋯Cl and C⋯Cl/Cl⋯C contacts.
Table 3. Percentage contributions of interatomic contacts to the Hirshfeld surface for (I).
| Percentage contribution | |
|---|---|
| Contact | (I) |
| H⋯H | 11.9 |
| F⋯H/H⋯F | 40.8 |
| O⋯H/H⋯O | 11.2 |
| F⋯F | 10.5 |
| C⋯F/F⋯C | 7.0 |
| Cl⋯H/H⋯Cl | 4.6 |
| C⋯H/H⋯C | 3.5 |
| F⋯Cl/Cl⋯F | 3.1 |
| C⋯Cl/Cl⋯C | 2.6 |
| N⋯H/H⋯N | 2.2 |
| C⋯C | 0.6 |
| O⋯O | 0.3 |
| N⋯F/F⋯N | 0.3 |
| C⋯N/N⋯C | 0.2 |
| C⋯O/O⋯C | 0.1 |
| O⋯Cl/Cl⋯O | 0.1 |
In the fingerprint plot delineated into H⋯H contacts in Fig. 6 ▸, the short interatomic H⋯H contact involving quinoline-H7 and methylene-H15B, both derived from the cation, Table 2 ▸, is viewed as pencil-like tip at d e + d i ∼2.0 Å. In the fingerprint plot delineated into O⋯H/H⋯O contacts, the spikes associated with the N—H⋯O hydrogen bonds and C—H⋯O interactions are merged within the plot. The obvious feature in the plot is a pair of spikes with tips at d e + d i ∼1.8 Å, which correspond to the most dominant O—H⋯O hydrogen bond; this is also responsible for most of the points concentrated in the narrower region of spikes. The influence of short interatomic halogen–hydrogen and halogen–halogen contacts in the crystal, Table 2 ▸, is observed as a pair of forceps-like tips at d e + d i ∼2.5 Å (F⋯H) and 3.0 Å (Cl⋯H), and an arrow-shaped tip at d e + d i ∼2.8 Å in the fingerprint plots delineated into F⋯H/H⋯F, Cl⋯H/H⋯Cl and F⋯F contacts, respectively. The involvement of chloride and fluoride atoms in C-halogen⋯π contacts, Table 1 ▸, results in the small but significant percentage contribution from C⋯F/F⋯C and C⋯Cl/Cl⋯C contacts to the Hirshfeld surface, Table 3 ▸. These intermolecular contacts are also characterized as forceps-like and anchor-shaped distributions of points in the fingerprint plots delineated into the respective contacts, Fig. 6 ▸. The small percentage contribution from other remaining interatomic contacts summarized in Table 3 ▸ have negligible effect on the packing in the crystal.
Database survey
Kryptoracemic behaviour is rare and is found in only 0.1% of all organic structures (Fábián & Brock, 2010 ▸). This observation clearly implies that 99.9% of racemic compounds, molecules with meso symmetry and achiral molecules will crystallize about a centre of inversion. Given there are fewer than 30 structures containing Mefloquine/derivatives of Mefloquine included in the Cambridge Structural Database (Groom et al., 2016 ▸), the reporting of two kryptoracemates of mefloquinium cations in recent times (Jotani et al., 2016 ▸; Wardell, Wardell et al., 2016 ▸) suggests a higher than anticipated propensity for this phenomenon. The two examples were isolated from attempts at chiral resolution of Mefloquine with carboxylic acids. In the first of the two reported structures, the asymmetric unit comprised a pair of pseudo-enantiomeric mefloquinium cations with the charge-balance provided by chloride and 4-fluorobenzenesulfonate anions (Jotani et al., 2016 ▸). In the second example, again two mefloquinium cations are pseudo-racemic, with the charge-balance provided by two independent 3,3,3-trifluoro-2-methoxy-2-phenylpropanoate anions, i.e. (+)-PhC(CF3)(OMe)CO2 − (Wardell, Wardell et al., 2016 ▸). The appearance of kryptoracemic salts of mefloquinium with non-chiral and chiral counter-ions warrants further investigation into this comparatively rare behaviour in order to reveal the reasons for such crystallization outcomes.
Synthesis and crystallization
A solution of mefloquinium chloride (1 mmol) and sodium difluorochoroacetate (1 mmol) in EtOH (10ml) was refluxed for 20 mins. The reaction mixture was left at room temperature and after two days, colourless crystals of the title salt, (I), were collected; M.p. 473–475 K.1H NMR (DMSO-d 6) δ: 1.20–1.35 (2H, m), 1.55–1.75 (4H, m), 3.04 (1H, br t), 3.53 (1H, br d), 5.90 (1H, s), 6.94 (1H, br d), 8.01 (1H, t, J = 8.0 Hz), 8.13 (1H, s), 8.42 (1H, d, J = 8.02 Hz), 8.72 (1H, d, J = 8.0 Hz), 9.48 (1H, br s); N—H H not observed. 13C NMR (DMSO-d 6) δ: 21.43 (2×), 21.59, 44.51, 58.90, 67.85, 1135.50. 121.17 (J C,F = 273.8 Hz), 121.21 (J C,F = 311.0 Hz), 123.64 (J C,F = 271.7.8 Hz), 126.37, 127.93 (J C,F = 29.2 Hz), 128.32, 128.68. 129.9 (J C,F = 5.2 Hz), 142.78, 146.73 (J C,F = 34.5 Hz), 150.97, 159.82 (J C,F = 25.2 Hz). 19F NMR (DMSO-d 6) δ: −58.65, −58.84, −66.68. IR (cm−1) 3300–2400 (s,v br), 1662 (s).
Refinement
Crystal data, data collection and structure refinement details are summarized in Table 4 ▸. The carbon-bound H atoms were placed in calculated positions (C—H = 0.95–1.00 Å) and were included in the refinement in the riding-model approximation, with U iso(H) set to 1.2U eq(C). The O- and N-bound H atoms were refined with the distance restraints O—H = 0.84±0.01 and 0.88±0.01 Å, respectively, and with U iso(H) = 1.5U eq(O) and 1.2U eq(N), respectively.
Table 4. Experimental details.
| Crystal data | |
| Chemical formula | C17H17F6N2O+·C2ClF2O2 − |
| M r | 508.79 |
| Crystal system, space group | Monoclinic, P21/c |
| Temperature (K) | 120 |
| a, b, c (Å) | 14.4535 (4), 6.3387 (2), 23.9040 (8) |
| β (°) | 104.214 (2) |
| V (Å3) | 2122.95 (12) |
| Z | 4 |
| Radiation type | Mo Kα |
| μ (mm−1) | 0.27 |
| Crystal size (mm) | 0.62 × 0.20 × 0.06 |
| Data collection | |
| Diffractometer | Bruker–Nonius Roper CCD camera on κ-goniostat |
| Absorption correction | Multi-scan (SADABS; Sheldrick, 2007 ▸) |
| T min, T max | 0.623, 0.746 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 19411, 4799, 3311 |
| R int | 0.054 |
| (sin θ/λ)max (Å−1) | 0.649 |
| Refinement | |
| R[F 2 > 2σ(F 2)], wR(F 2), S | 0.052, 0.142, 1.04 |
| No. of reflections | 4799 |
| No. of parameters | 307 |
| No. of restraints | 3 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.94, −0.83 |
Supplementary Material
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989018007703/hb7752sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989018007703/hb7752Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989018007703/hb7752Isup3.cml
CCDC reference: 1844854
Additional supporting information: crystallographic information; 3D view; checkCIF report
Acknowledgments
The use of the EPSRC X-ray crystallographic service at the University of Southampton, England, and the valuable assistance of the staff there is gratefully acknowledged.
supplementary crystallographic information
Crystal data
| C17H17F6N2O+·C2ClF2O2− | F(000) = 1032 |
| Mr = 508.79 | Dx = 1.592 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| a = 14.4535 (4) Å | Cell parameters from 17332 reflections |
| b = 6.3387 (2) Å | θ = 2.9–27.5° |
| c = 23.9040 (8) Å | µ = 0.27 mm−1 |
| β = 104.214 (2)° | T = 120 K |
| V = 2122.95 (12) Å3 | Lath, colourless |
| Z = 4 | 0.62 × 0.20 × 0.06 mm |
Data collection
| Bruker–Nonius Roper CCD camera on κ-goniostat diffractometer | 4799 independent reflections |
| Radiation source: Bruker–Nonius FR591 rotating anode | 3311 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.054 |
| Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 3.0° |
| φ & ω scans | h = −18→18 |
| Absorption correction: multi-scan (SADABS; Sheldrick, 2007) | k = −8→8 |
| Tmin = 0.623, Tmax = 0.746 | l = −31→30 |
| 19411 measured reflections |
Refinement
| Refinement on F2 | 3 restraints |
| Least-squares matrix: full | Hydrogen site location: mixed |
| R[F2 > 2σ(F2)] = 0.052 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.142 | w = 1/[σ2(Fo2) + (0.0643P)2 + 1.2072P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.04 | (Δ/σ)max < 0.001 |
| 4799 reflections | Δρmax = 0.94 e Å−3 |
| 307 parameters | Δρmin = −0.83 e Å−3 |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| F1 | 1.03148 (10) | −0.0703 (2) | 0.44433 (7) | 0.0399 (4) | |
| F2 | 0.91566 (11) | −0.2736 (2) | 0.44998 (7) | 0.0359 (4) | |
| F3 | 0.96175 (11) | −0.2572 (2) | 0.37136 (6) | 0.0366 (4) | |
| F4 | 0.98916 (10) | 0.2960 (2) | 0.26696 (6) | 0.0349 (4) | |
| F5 | 0.86497 (10) | 0.1175 (2) | 0.22440 (6) | 0.0336 (4) | |
| F6 | 0.89009 (11) | 0.4242 (2) | 0.19252 (6) | 0.0375 (4) | |
| O1 | 0.66219 (12) | 0.1694 (3) | 0.47757 (7) | 0.0279 (4) | |
| H1O | 0.6352 (19) | 0.078 (4) | 0.4540 (10) | 0.042* | |
| N1 | 0.88608 (13) | 0.1322 (3) | 0.34721 (8) | 0.0216 (4) | |
| N2 | 0.64265 (14) | 0.5664 (3) | 0.51657 (8) | 0.0218 (4) | |
| H1N | 0.5904 (12) | 0.601 (4) | 0.4899 (8) | 0.026* | |
| H2N | 0.6290 (17) | 0.450 (3) | 0.5335 (10) | 0.026* | |
| C1 | 0.87768 (16) | 0.0391 (3) | 0.39479 (9) | 0.0208 (5) | |
| C2 | 0.81459 (16) | 0.1003 (4) | 0.42804 (10) | 0.0229 (5) | |
| H2 | 0.8107 | 0.0219 | 0.4613 | 0.027* | |
| C3 | 0.75848 (16) | 0.2756 (4) | 0.41176 (9) | 0.0208 (5) | |
| C4 | 0.76778 (16) | 0.3898 (4) | 0.36220 (9) | 0.0210 (5) | |
| C5 | 0.71864 (16) | 0.5805 (4) | 0.34349 (10) | 0.0234 (5) | |
| H5 | 0.6760 | 0.6371 | 0.3642 | 0.028* | |
| C6 | 0.73220 (17) | 0.6835 (4) | 0.29583 (10) | 0.0264 (5) | |
| H6 | 0.7007 | 0.8140 | 0.2846 | 0.032* | |
| C7 | 0.79223 (18) | 0.5987 (4) | 0.26324 (10) | 0.0272 (5) | |
| H7 | 0.8003 | 0.6718 | 0.2301 | 0.033* | |
| C8 | 0.83903 (16) | 0.4123 (4) | 0.27881 (10) | 0.0228 (5) | |
| C9 | 0.83122 (15) | 0.3071 (4) | 0.33029 (9) | 0.0197 (5) | |
| C10 | 0.94619 (17) | −0.1411 (4) | 0.41442 (10) | 0.0253 (5) | |
| C11 | 0.89662 (18) | 0.3125 (4) | 0.24146 (10) | 0.0275 (5) | |
| C12 | 0.68616 (16) | 0.3397 (4) | 0.44507 (10) | 0.0222 (5) | |
| H12 | 0.6269 | 0.3899 | 0.4171 | 0.027* | |
| C13 | 0.72279 (15) | 0.5153 (4) | 0.48924 (9) | 0.0210 (5) | |
| H13 | 0.7367 | 0.6430 | 0.4681 | 0.025* | |
| C14 | 0.66441 (19) | 0.7397 (4) | 0.56031 (10) | 0.0296 (6) | |
| H14A | 0.6100 | 0.7582 | 0.5782 | 0.036* | |
| H14B | 0.6738 | 0.8737 | 0.5412 | 0.036* | |
| C15 | 0.75362 (19) | 0.6874 (4) | 0.60653 (10) | 0.0323 (6) | |
| H15A | 0.7409 | 0.5645 | 0.6291 | 0.039* | |
| H15B | 0.7705 | 0.8086 | 0.6332 | 0.039* | |
| C16 | 0.83715 (19) | 0.6373 (4) | 0.58047 (11) | 0.0322 (6) | |
| H16A | 0.8929 | 0.5940 | 0.6115 | 0.039* | |
| H16B | 0.8550 | 0.7654 | 0.5619 | 0.039* | |
| C17 | 0.81136 (17) | 0.4608 (4) | 0.53591 (10) | 0.0266 (5) | |
| H17A | 0.8654 | 0.4364 | 0.5181 | 0.032* | |
| H17B | 0.8001 | 0.3288 | 0.5554 | 0.032* | |
| C18 | 0.49744 (17) | 0.7909 (4) | 0.39729 (10) | 0.0227 (5) | |
| C19 | 0.41892 (18) | 0.8393 (4) | 0.34241 (11) | 0.0322 (6) | |
| Cl1 | 0.43173 (7) | 0.68095 (18) | 0.28514 (4) | 0.0736 (3) | |
| F7 | 0.33144 (11) | 0.8114 (3) | 0.35113 (8) | 0.0503 (5) | |
| F8 | 0.42202 (13) | 1.0418 (3) | 0.32666 (8) | 0.0548 (5) | |
| O2 | 0.47705 (12) | 0.6592 (3) | 0.43060 (7) | 0.0345 (4) | |
| O3 | 0.57421 (12) | 0.8831 (3) | 0.40098 (7) | 0.0337 (4) |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| F1 | 0.0265 (8) | 0.0331 (9) | 0.0508 (10) | −0.0024 (7) | −0.0085 (7) | 0.0049 (7) |
| F2 | 0.0410 (9) | 0.0275 (8) | 0.0417 (9) | 0.0037 (7) | 0.0150 (7) | 0.0167 (7) |
| F3 | 0.0443 (9) | 0.0331 (8) | 0.0319 (8) | 0.0130 (7) | 0.0087 (7) | −0.0002 (7) |
| F4 | 0.0263 (8) | 0.0453 (9) | 0.0343 (8) | 0.0014 (7) | 0.0098 (6) | 0.0052 (7) |
| F5 | 0.0402 (9) | 0.0323 (8) | 0.0296 (8) | 0.0005 (7) | 0.0111 (7) | −0.0070 (6) |
| F6 | 0.0478 (9) | 0.0450 (9) | 0.0241 (7) | 0.0091 (8) | 0.0172 (7) | 0.0081 (7) |
| O1 | 0.0352 (10) | 0.0257 (9) | 0.0256 (9) | −0.0125 (8) | 0.0129 (8) | −0.0029 (7) |
| N1 | 0.0215 (10) | 0.0203 (10) | 0.0209 (10) | −0.0036 (8) | 0.0011 (8) | −0.0009 (8) |
| N2 | 0.0257 (11) | 0.0225 (11) | 0.0166 (9) | −0.0019 (9) | 0.0039 (8) | 0.0009 (8) |
| C1 | 0.0228 (11) | 0.0176 (11) | 0.0202 (11) | −0.0037 (10) | 0.0016 (9) | 0.0002 (9) |
| C2 | 0.0258 (12) | 0.0234 (12) | 0.0186 (11) | −0.0041 (10) | 0.0040 (9) | 0.0027 (10) |
| C3 | 0.0219 (12) | 0.0217 (12) | 0.0180 (11) | −0.0059 (10) | 0.0035 (9) | −0.0026 (9) |
| C4 | 0.0209 (11) | 0.0235 (12) | 0.0171 (10) | −0.0023 (10) | 0.0021 (9) | −0.0006 (9) |
| C5 | 0.0256 (12) | 0.0230 (12) | 0.0210 (11) | 0.0011 (10) | 0.0044 (9) | −0.0027 (10) |
| C6 | 0.0320 (13) | 0.0250 (13) | 0.0203 (11) | 0.0041 (11) | 0.0026 (10) | 0.0009 (10) |
| C7 | 0.0347 (14) | 0.0290 (13) | 0.0169 (11) | 0.0007 (11) | 0.0047 (10) | 0.0043 (10) |
| C8 | 0.0232 (12) | 0.0243 (12) | 0.0201 (11) | −0.0033 (10) | 0.0037 (9) | −0.0027 (10) |
| C9 | 0.0181 (11) | 0.0206 (12) | 0.0185 (10) | −0.0038 (9) | 0.0007 (9) | 0.0003 (9) |
| C10 | 0.0239 (12) | 0.0245 (12) | 0.0257 (12) | −0.0036 (10) | 0.0024 (10) | 0.0023 (10) |
| C11 | 0.0304 (14) | 0.0294 (13) | 0.0236 (12) | 0.0004 (11) | 0.0080 (10) | 0.0044 (11) |
| C12 | 0.0246 (12) | 0.0229 (12) | 0.0202 (11) | −0.0040 (10) | 0.0072 (9) | 0.0000 (9) |
| C13 | 0.0222 (11) | 0.0227 (12) | 0.0187 (11) | −0.0025 (10) | 0.0062 (9) | 0.0001 (9) |
| C14 | 0.0440 (15) | 0.0227 (13) | 0.0233 (12) | −0.0020 (11) | 0.0108 (11) | −0.0034 (10) |
| C15 | 0.0474 (16) | 0.0285 (13) | 0.0187 (12) | −0.0084 (12) | 0.0036 (11) | −0.0049 (10) |
| C16 | 0.0377 (14) | 0.0314 (14) | 0.0229 (12) | −0.0103 (12) | −0.0011 (11) | 0.0012 (11) |
| C17 | 0.0281 (13) | 0.0261 (13) | 0.0228 (12) | −0.0036 (11) | 0.0012 (10) | 0.0020 (10) |
| C18 | 0.0257 (12) | 0.0232 (12) | 0.0210 (11) | 0.0006 (10) | 0.0089 (10) | −0.0049 (10) |
| C19 | 0.0324 (14) | 0.0314 (15) | 0.0304 (13) | 0.0004 (12) | 0.0034 (11) | 0.0044 (11) |
| Cl1 | 0.0796 (6) | 0.0932 (8) | 0.0373 (5) | 0.0119 (6) | −0.0064 (4) | −0.0325 (5) |
| F7 | 0.0260 (8) | 0.0627 (12) | 0.0579 (11) | 0.0023 (8) | 0.0018 (7) | 0.0159 (9) |
| F8 | 0.0594 (11) | 0.0444 (11) | 0.0564 (11) | 0.0056 (9) | 0.0060 (9) | 0.0235 (9) |
| O2 | 0.0284 (9) | 0.0451 (11) | 0.0310 (10) | 0.0012 (9) | 0.0093 (8) | 0.0134 (9) |
| O3 | 0.0320 (10) | 0.0380 (10) | 0.0316 (10) | −0.0117 (9) | 0.0085 (8) | −0.0078 (8) |
Geometric parameters (Å, º)
| F1—C10 | 1.342 (3) | C7—C8 | 1.367 (3) |
| F2—C10 | 1.344 (3) | C7—H7 | 0.9500 |
| F3—C10 | 1.329 (3) | C8—C9 | 1.428 (3) |
| F4—C11 | 1.331 (3) | C8—C11 | 1.502 (3) |
| F5—C11 | 1.346 (3) | C12—C13 | 1.536 (3) |
| F6—C11 | 1.350 (3) | C12—H12 | 1.0000 |
| O1—C12 | 1.422 (3) | C13—C17 | 1.517 (3) |
| O1—H1O | 0.835 (10) | C13—H13 | 1.0000 |
| N1—C1 | 1.313 (3) | C14—C15 | 1.514 (4) |
| N1—C9 | 1.365 (3) | C14—H14A | 0.9900 |
| N2—C14 | 1.496 (3) | C14—H14B | 0.9900 |
| N2—C13 | 1.498 (3) | C15—C16 | 1.522 (4) |
| N2—H1N | 0.888 (10) | C15—H15A | 0.9900 |
| N2—H2N | 0.886 (10) | C15—H15B | 0.9900 |
| C1—C2 | 1.403 (3) | C16—C17 | 1.527 (3) |
| C1—C10 | 1.509 (3) | C16—H16A | 0.9900 |
| C2—C3 | 1.374 (3) | C16—H16B | 0.9900 |
| C2—H2 | 0.9500 | C17—H17A | 0.9900 |
| C3—C4 | 1.423 (3) | C17—H17B | 0.9900 |
| C3—C12 | 1.517 (3) | C18—O2 | 1.238 (3) |
| C4—C5 | 1.418 (3) | C18—O3 | 1.238 (3) |
| C4—C9 | 1.429 (3) | C18—C19 | 1.540 (3) |
| C5—C6 | 1.368 (3) | C19—F8 | 1.341 (3) |
| C5—H5 | 0.9500 | C19—F7 | 1.343 (3) |
| C6—C7 | 1.407 (3) | C19—Cl1 | 1.744 (3) |
| C6—H6 | 0.9500 | ||
| C12—O1—H1O | 107 (2) | F6—C11—C8 | 111.3 (2) |
| C1—N1—C9 | 116.79 (19) | O1—C12—C3 | 112.03 (19) |
| C14—N2—C13 | 114.28 (19) | O1—C12—C13 | 105.27 (17) |
| C14—N2—H1N | 108.3 (17) | C3—C12—C13 | 112.92 (18) |
| C13—N2—H1N | 110.7 (17) | O1—C12—H12 | 108.8 |
| C14—N2—H2N | 108.9 (17) | C3—C12—H12 | 108.8 |
| C13—N2—H2N | 107.6 (16) | C13—C12—H12 | 108.8 |
| H1N—N2—H2N | 107 (2) | N2—C13—C17 | 109.37 (18) |
| N1—C1—C2 | 125.3 (2) | N2—C13—C12 | 106.47 (17) |
| N1—C1—C10 | 114.6 (2) | C17—C13—C12 | 115.3 (2) |
| C2—C1—C10 | 120.1 (2) | N2—C13—H13 | 108.5 |
| C3—C2—C1 | 118.9 (2) | C17—C13—H13 | 108.5 |
| C3—C2—H2 | 120.5 | C12—C13—H13 | 108.5 |
| C1—C2—H2 | 120.5 | N2—C14—C15 | 110.1 (2) |
| C2—C3—C4 | 118.5 (2) | N2—C14—H14A | 109.6 |
| C2—C3—C12 | 120.2 (2) | C15—C14—H14A | 109.6 |
| C4—C3—C12 | 121.3 (2) | N2—C14—H14B | 109.6 |
| C5—C4—C3 | 123.7 (2) | C15—C14—H14B | 109.6 |
| C5—C4—C9 | 118.8 (2) | H14A—C14—H14B | 108.1 |
| C3—C4—C9 | 117.5 (2) | C14—C15—C16 | 111.5 (2) |
| C6—C5—C4 | 120.4 (2) | C14—C15—H15A | 109.3 |
| C6—C5—H5 | 119.8 | C16—C15—H15A | 109.3 |
| C4—C5—H5 | 119.8 | C14—C15—H15B | 109.3 |
| C5—C6—C7 | 120.8 (2) | C16—C15—H15B | 109.3 |
| C5—C6—H6 | 119.6 | H15A—C15—H15B | 108.0 |
| C7—C6—H6 | 119.6 | C15—C16—C17 | 110.9 (2) |
| C8—C7—C6 | 120.7 (2) | C15—C16—H16A | 109.5 |
| C8—C7—H7 | 119.6 | C17—C16—H16A | 109.5 |
| C6—C7—H7 | 119.6 | C15—C16—H16B | 109.5 |
| C7—C8—C9 | 120.0 (2) | C17—C16—H16B | 109.5 |
| C7—C8—C11 | 120.8 (2) | H16A—C16—H16B | 108.1 |
| C9—C8—C11 | 119.2 (2) | C13—C17—C16 | 111.3 (2) |
| N1—C9—C4 | 122.8 (2) | C13—C17—H17A | 109.4 |
| N1—C9—C8 | 118.1 (2) | C16—C17—H17A | 109.4 |
| C4—C9—C8 | 119.0 (2) | C13—C17—H17B | 109.4 |
| F3—C10—F1 | 106.86 (19) | C16—C17—H17B | 109.4 |
| F3—C10—F2 | 106.77 (19) | H17A—C17—H17B | 108.0 |
| F1—C10—F2 | 105.88 (19) | O2—C18—O3 | 128.6 (2) |
| F3—C10—C1 | 113.66 (19) | O2—C18—C19 | 116.1 (2) |
| F1—C10—C1 | 111.04 (19) | O3—C18—C19 | 115.3 (2) |
| F2—C10—C1 | 112.17 (19) | F8—C19—F7 | 105.5 (2) |
| F4—C11—F5 | 107.2 (2) | F8—C19—C18 | 111.2 (2) |
| F4—C11—F6 | 106.65 (19) | F7—C19—C18 | 111.5 (2) |
| F5—C11—F6 | 105.81 (19) | F8—C19—Cl1 | 108.24 (18) |
| F4—C11—C8 | 113.7 (2) | F7—C19—Cl1 | 109.36 (19) |
| F5—C11—C8 | 111.7 (2) | C18—C19—Cl1 | 110.85 (18) |
| C9—N1—C1—C2 | 2.6 (3) | N1—C1—C10—F2 | −158.96 (19) |
| C9—N1—C1—C10 | −174.73 (19) | C2—C1—C10—F2 | 23.6 (3) |
| N1—C1—C2—C3 | −2.4 (3) | C7—C8—C11—F4 | 117.4 (2) |
| C10—C1—C2—C3 | 174.7 (2) | C9—C8—C11—F4 | −64.5 (3) |
| C1—C2—C3—C4 | −0.9 (3) | C7—C8—C11—F5 | −121.2 (2) |
| C1—C2—C3—C12 | 177.0 (2) | C9—C8—C11—F5 | 57.0 (3) |
| C2—C3—C4—C5 | −175.6 (2) | C7—C8—C11—F6 | −3.1 (3) |
| C12—C3—C4—C5 | 6.5 (3) | C9—C8—C11—F6 | 175.05 (19) |
| C2—C3—C4—C9 | 3.7 (3) | C2—C3—C12—O1 | −20.3 (3) |
| C12—C3—C4—C9 | −174.2 (2) | C4—C3—C12—O1 | 157.6 (2) |
| C3—C4—C5—C6 | 179.0 (2) | C2—C3—C12—C13 | 98.3 (2) |
| C9—C4—C5—C6 | −0.3 (3) | C4—C3—C12—C13 | −83.8 (3) |
| C4—C5—C6—C7 | 2.4 (4) | C14—N2—C13—C17 | 56.2 (3) |
| C5—C6—C7—C8 | −0.6 (4) | C14—N2—C13—C12 | −178.61 (18) |
| C6—C7—C8—C9 | −3.3 (4) | O1—C12—C13—N2 | −59.7 (2) |
| C6—C7—C8—C11 | 174.9 (2) | C3—C12—C13—N2 | 177.79 (18) |
| C1—N1—C9—C4 | 0.6 (3) | O1—C12—C13—C17 | 61.8 (2) |
| C1—N1—C9—C8 | 179.8 (2) | C3—C12—C13—C17 | −60.7 (3) |
| C5—C4—C9—N1 | 175.6 (2) | C13—N2—C14—C15 | −55.7 (3) |
| C3—C4—C9—N1 | −3.7 (3) | N2—C14—C15—C16 | 54.0 (3) |
| C5—C4—C9—C8 | −3.5 (3) | C14—C15—C16—C17 | −55.1 (3) |
| C3—C4—C9—C8 | 177.2 (2) | N2—C13—C17—C16 | −55.3 (3) |
| C7—C8—C9—N1 | −173.9 (2) | C12—C13—C17—C16 | −175.15 (19) |
| C11—C8—C9—N1 | 7.9 (3) | C15—C16—C17—C13 | 56.0 (3) |
| C7—C8—C9—C4 | 5.3 (3) | O2—C18—C19—F8 | 146.3 (2) |
| C11—C8—C9—C4 | −172.9 (2) | O3—C18—C19—F8 | −36.6 (3) |
| N1—C1—C10—F3 | −37.7 (3) | O2—C18—C19—F7 | 28.8 (3) |
| C2—C1—C10—F3 | 144.8 (2) | O3—C18—C19—F7 | −154.0 (2) |
| N1—C1—C10—F1 | 82.8 (2) | O2—C18—C19—Cl1 | −93.3 (2) |
| C2—C1—C10—F1 | −94.7 (3) | O3—C18—C19—Cl1 | 83.9 (2) |
Hydrogen-bond geometry (Å, º)
Cg1 is the centroid of the (C4–C9) ring.
| D—H···A | D—H | H···A | D···A | D—H···A |
| N2—H2N···O1 | 0.89 (2) | 2.34 (2) | 2.722 (3) | 106 (2) |
| O1—H1O···O3i | 0.84 (2) | 1.83 (2) | 2.668 (3) | 178 (3) |
| N2—H1N···O2 | 0.89 (2) | 1.92 (2) | 2.808 (3) | 177 (2) |
| N2—H2N···O2ii | 0.89 (2) | 2.05 (2) | 2.776 (3) | 138 (2) |
| C5—H5···O3 | 0.95 | 2.45 | 3.367 (3) | 162 |
| C14—H14B···O1iii | 0.99 | 2.39 | 3.362 (3) | 166 |
| C19—Cl1···Cg1iv | 1.74 (1) | 3.91 (1) | 4.208 (3) | 88 (1) |
| C10—F3···Cg1i | 1.33 (1) | 3.09 (1) | 3.762 (3) | 110 (1) |
Symmetry codes: (i) x, y−1, z; (ii) −x+1, −y+1, −z+1; (iii) x, y+1, z; (iv) −x+1, y+1/2, −z+1/2.
Funding Statement
This work was funded by Conselho Nacional de Desenvolvimento Científico e Tecnológico grant to J. L. Wardell.
References
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989018007703/hb7752sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989018007703/hb7752Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989018007703/hb7752Isup3.cml
CCDC reference: 1844854
Additional supporting information: crystallographic information; 3D view; checkCIF report








