BRCA1/2 testing: therapeutic implications for breast cancer management

Abstract

Testing for germline BRCA1/2 mutations has an established predictive role in breast cancer risk assessment. More recently, studies have also identified BRCA1/2 status as clinically relevant in the selection of therapy for patients already diagnosed with breast cancer. Emerging breast and ovarian cancer research indicate that BRCA status predicts responsiveness to platinum-based chemotherapy, as well as to inhibitors of poly(ADP-ribose) polymerase (PARP), owing to the ability of these interventions to inhibit DNA repair pathways. BRCA1/2 mutation testing thus has important and expanding roles in treatment planning for subsets of patients with breast cancer. Recent studies have demonstrated different activity of platinum salts in BRCA-mutated compared with non-BRCA-mutated breast cancer. Furthermore, phase II/III studies of single-agent PARP inhibitors (PARPi) have shown encouraging progression-free survival results in patients with BRCA1/2-mutated breast cancer, which led to the recent approval of olaparib, the first PARPi to be approved in breast cancer. Determining BRCA1/2 mutation status in this breast cancer subgroup could potentially expand treatment options beyond the current standard of taxane and anthracycline-based chemotherapy. Although attempts have been made to develop scoring systems that measure defects in homologous recombination repair pathways to predict response to platinum or PARPi, none have yet made it into clinical use. In this review, we summarise the recent and ongoing preclinical and clinical studies on the treatment of BRCA-associated breast cancer, and discuss efforts to identify other breast cancer patients who may be responsive to therapies effective in BRCA mutation carriers, including platinum-containing chemotherapy and PARPi.

Introduction

Germline mutations in BRCA1 or BRCA2 (gBRCA1/2m) confer a well-established increased risk for the development of papillary serous ovarian cancer (OC), triple-negative breast cancer (TNBC; BRCA1), oestrogen receptor (ER)-positive breast cancer (BC), and human epidermal growth factor receptor 2 (HER2)-negative BC (BRCA2); however, all BC subtypes can occur in association with gBRCA1/2m.^1–8 Systemic therapies are routinely selected by a few well-established markers of response, including tumour ER and progesterone receptor (PgR) expression, and tumour amplification or overexpression of HER2.⁹ Until recently, BC cases that are negative for all three of these predictive biomarkers have been treated as a homogeneous group using chemotherapy, due to a lack of therapeutic targets and treatments specific for TNBC subtypes. Advances in molecular profiling are making it increasingly apparent that TNBCs are heterogeneous, and that certain biomarkers may predict clinical response to specific therapies.^10–13 At this time, among the most clinically relevant of these predictive biomarkers are loss-of-function mutations in BRCA1 or BRCA2 (BRCA1/2), which are present in up to 20% of patients with TNBC,¹⁴ and these represent an opportunity for improved precision treatment. There is also growing evidence that BRCA1/2 mutations (BRCA1/2m) are clinically relevant for identifying subtypes of hormone receptor-positive HER2-negative BC.^15,16

This review evaluates current research on the treatment of BRCA-associated BC, and highlights the importance of BRCA1/2m testing to help identify patients with BC who might benefit from platinum-based chemotherapy, as well as treatment with poly(ADP-ribose) polymerase inhibitors (PARPi). The biological and preclinical evidence supporting the rationale for targeting BRCA1/2m in BC are described, and evidence from recent and ongoing clinical studies with platinum salts and PARPi is highlighted in both advanced and early-stage BC settings. Finally, we briefly explore the biomarkers currently being evaluated for potential future clinical application, including a look beyond BRCA1/2m and the concept of BRCAness.

Who (and what) to test for BRCA mutation

The value of gBRCA1/2m testing for cancer risk reduction in breast and ovarian cancer is well-established.^17–19 To date, researchers from the Breast Cancer Information Core (https://research.nhgri.nih.gov/bic/) have collated more than 1800 mutations in the BRCA1 gene and 2000 mutations in the BRCA2 gene.²⁰ This collection of mutations comprises intronic changes, missense mutations, small in-frame insertions and deletions, and large rearrangements,²⁰ and different mutations have been reported to confer varying risks for developing OC or BC. In a study of more than 30,000 BRCA1/2m carriers, researchers identified risk clusters that comprised variants of strong and potential clinical significance, as well as other variants of unknown clinical significance and benign or likely benign variants.⁷ This analysis indicated that OC cluster regions, which are associated with greater OC risk, tended to be located in the central region of each gene; whereas BC cluster mutations were located in the 5′ and 3′ regions.^7,20 Alterations that appear to confer higher risk include missense mutations in the RING finger, BRCA1 C-terminal (BRCT), and DNA-binding domains, large genomic rearrangements, and founder mutations in both BRCA genes;^7,20 however, validation is required before these data can be used for clinical risk assessment.

Beyond testing for gBRCA1/2m, a small percentage of BRCA-related cancers contain purely somatic mutations, which can be detected through direct analysis of the tumour tissue or circulating cell-free DNA.^21,22 The percentage of somatic BRCA1/2m in BC is not well established; however, two studies found that ~3% of unselected primary BCs had a somatic mutation in BRCA1 or BRCA2.^23,24 By contrast, 19% of 235 unselected OCs were found to harbour a somatic BRCA1/2m.²⁵ Among the 28 ovarian tumours with a somatic BRCA1/2m for which a blood sample (germline DNA) was available, 11 (39%) were found not to have a germline BRCA1/2m, suggesting that 7%–8% of OCs harbour only a somatic BRCA1/2m, compared with 3% in BC.²⁵ Whereas there is accumulating evidence to support testing for somatic BRCA1/2m to guide therapy, the clinical implications for treatment are not yet clear for BC or OC.²⁶ In BC, the rationale for somatic BRCA1/2m testing is less developed than for germline testing, but may soon become reasonable in some settings if specific BRCA-targeted therapies, such as PARPi, are found to be effective in the presence of BRCA1/2m alone. Of note, although these mutations are uncommon in prostate cancer, data suggest that patients with somatic BRCA1/2m will respond to PARPi.²⁷ The efficacy of PARPi for advanced BC with somatic BRCA1/2m is currently being investigated in a study by the Translational Breast Cancer Research Consortium (NCT03344965).

The role of BRCA testing to guide therapy selection in patients already diagnosed with BC is evolving. Box 1 lists the patient characteristics that should trigger testing for BRCA1/2m in those already diagnosed with BC. The presence of BRCA1/2m may offer patients additional or alternative treatment options as discussed in this review, in both early-stage and advanced BC.

Box 1. Characteristics that should trigger testing for germline BRCA1/2 mutation in patients already diagnosed with breast cancer.

• Family history of breast, ovarian/tubal/peritoneal cancer, pancreatic, or aggressive prostate cancer

• Young age at diagnosis (<50 years)

• Triple-negative breast cancer (ER-negative, PgR-negative, and HER2-negative)

• Breast cancer in a male

• Ashkenazi Jewish heritage

• Personal history of ovarian or pancreatic cancer

• Detection of somatic BRCA1/2 mutation

• Patient with metastatic HER2-negative breast cancer who is eligible for treatment with a PARPi¹⁹

ER-negative oestrogen receptor-negative, HER2-negative human epidermal growth factor receptor 2-negative, PgR-negative progesterone receptor-negative

Evidence and rationale for targeting BRCA1/2 mutations

The biologic rationale for targeting BRCA1/2 mutations with PARPi or platinum salts in BC has been supported by preclinical studies investigating these interventions in BC, combined with clinical data assessing carboplatin in OC. Wild-type BRCA1 and BRCA2 are tumour-suppressor genes and their protein products have multiple functions, including serving as key enzymes in the homologous recombination pathway, which is the high-fidelity mechanism for repair of DNA double-strand (DS) breaks.^28,29 Loss-of-function mutations or silencing of BRCA1/2 disables the homologous recombination pathway, which forces cells to rely on lower fidelity more error-prone pathways for DNA repair, such as non-homologous end-joining, during which mutations and genetic instability may be introduced.^30–32

Inhibition of single-strand (SS) DNA break repair in tumour cells with homologous recombination deficiency³³ is synthetically lethal, and can cause cell death. Poly(ADP-ribose) polymerase-1 (PARP-1) is an integral enzyme in the repair pathway for SS DNA breaks; PARP-1 detects SS breaks and induces the creation of PAR chains on itself and adjacent nuclear proteins, thus signalling for other DNA repair enzymes to accumulate.³³ Eventually, PARP-1 ‘PARylates’ itself, allowing it to be released from the DNA and continue its cycle of sensing SS breaks. Therefore, in BRCA-deficient tumours with defective homologous recombination, PARPi prevent the repair of SS DNA breaks, which may lead to the accumulation of DS breaks and stalled DNA replication forks, leading to cell death.³⁴ Another way that PARPi may contribute to cell death is through the trapping of PARP proteins on DNA; the trapped PARP-1/DNA complexes can interfere with DNA replication, which also occurs by stalling the DNA replication forks.^32,35 Preclinical data have demonstrated differences in PARP trapping potency among PARPi (talazoparib exhibited the highest potency, followed by niraparib, olaparib, and rucaparib, with veliparib having the lowest potency). Trapping potencies did not correlate with their respective PARP catalytic inhibition,^35,36 and it is not clear whether these differences have any significant impact on clinical efficacy or safety.

The wild-type BRCA allele commonly undergoes loss-of-heterozygosity during tumourigenesis in individuals with heterozygous BRCA1/2 m, leading to severe deficiency in the homologous recombination pathway.²⁰ Therefore, a germline heterozygous BRCA1/2 mutation may be sufficient to identify tumour cells that are more likely to be sensitive to PARPi. In support of this, PARPi strongly reduced the proliferation and survival of cells harbouring defects in homologous recombination due to deficiencies in BRCA1/2 in laboratory and xenograft models.^37,38 Furthermore, high sensitivity to PARPi was observed in cells with deficiency in homologous recombination repair, including loss-of-BRCA1/2,³⁷ or loss of another protein essential for repair of DS breaks.³⁹ This is not surprising, given that a single-functional BRCA allele is sufficient to maintain homologous recombination.

Notably, preclinical studies investigating platinum salts found that cells lacking functional BRCA1 or BRCA2 were highly sensitive to cisplatin.⁴⁰ This is consistent with platinum-based chemotherapy studies in OC, which reported higher response rates in patients with homologous recombination deficiencies.^41,42 This sensitivity has been attributed to the formation of covalent crosslinks in the DNA, and an impaired ability of cells to repair this damage in the absence of competent homologous recombination.^20,43 Improved response rates to platinum-based chemotherapy in patients with BRCA1/2m OC, as well as the high sensitivity of homologous recombination-deficient cells to PARPi and platinum salts, led to clinical studies investigating both of these methods for the identification of responders and prediction of patient outcomes with targeted agents in the treatment of BRCA-related BC, OC, and other tumours. It also stimulated the search for further biomarkers of response.

BRCA mutations in advanced and metastatic BC management

Evidence regarding the use of BRCA status or homologous recombination competency to guide treatment selection in BC is strongest in the setting of metastatic disease, and several recent clinical studies have evaluated platinum salts and PARPi in patients with advanced or metastatic BC and BRCA1/2m.

Clinical outcomes in locally advanced and metastatic BC: platinum salts

The largest study testing the ability of gBRCA1/2m status to predict response to platinum salts was the ‘TNT’ Triple-Negative Breast Cancer Trial.^44,45 Enroled patients (n = 376) had recurrent, locally advanced or metastatic BC that was confirmed to be triple-negative or occurred in a known BRCA1/2m carrier (regardless of ER, PgR, or HER2 status). Patients were randomised to carboplatin or docetaxel as first-line treatment for recurrent disease, and stratified according to BRCA1/2 status. There was no significant difference in objective response rate (ORR), median progression-free survival (PFS), or overall survival (OS) in the overall population; however, among carriers of a BRCA1/2m (n = 43), the carboplatin group had a significantly higher ORR than the docetaxel group (68% versus 33%; P = 0.03), and the interaction between treatment effect and BRCA status was significant (P = 0.01).⁴⁵ Likewise, among mutation carriers, PFS was significantly longer in the carboplatin group versus the docetaxel group (6.8 versus 4.8 months; P = 0.03), and the interaction between treatment effect and BRCA status was significant (P = 0.03).⁴⁶ High-response rates to platinum salts in women with BRCA-related metastatic BC have also been reported in other studies, as described in Table 1.^47,48

Table 1.

Selected studies with platinum salts in gBRCA1/2m breast cancer

Study	Disease		Phase	Total (n)	BRCAm (n)	TNBC (n)	BRCAm ER+ (n)		Treatment	Response in overall population	Response in patients with wtBRCA1/2		Response in patients with gBRCA1/2m	Response in patients with BRCA1m
Advanced and metastatic breast cancer
TNT45	Metastatic TNBC or BRCA1/2 mutation BC		III	376	43	363	12		Carboplatin vs docetaxel	ORR: 31% with carboplatin vs 36% with docetaxel	NR		68% with carboplatin vs 33% with docetaxel	NR
TBCRC00948	Metastatic TNBC		II	86	11	86	0		Cisplatin or carboplatin	ORR: 25.6% (22/86)	ORR: 19.7% (13/66)		ORR: 54.5% (6/11)	NR
NCT0161172747	Metastatic BC with a BRCA1 mutation		II	20	20a	14	5		Cisplatin	NR	NR		NR	ORR: 80% CR: 45%
Brocade 2 NCT0150660982	Locally recurrent or metastatic BC with a gBRCA1/2 mutation		II	99	99	42	56 (ER+ and/or PgR+)		Paclitaxel/carboplatin/placebo (PCP)	61%	NR		61%	NR
Early-stage disease
NCT0163022685		Stage I–III BC with a BRCA1 mutation	II	107	107b	82		16	Cisplatin	NR		NR	NR	pCR: 61%
GeparSixto/GBG 66 NCT0142688087,88		Stage I–III TNBC or HER2+ BC	II/III	588	50	315 291 BRCA known		0	Backbone regimen ± carboplatin	With vs without carboplatin: TNBC pCR: 53% vs 37% 291 BRCA known status: 57% vs 41%		With vs without carboplatin: TNBC pCR: 55% vs 36%	With vs without carboplatin: TNBC pCR: 65% vs 67%	NR

BC breast cancer, CR complete response, ER+ oestrogen receptor-positive, gBRCA1/2 germline BRCA1/2, HER2+ human epidermal growth factor receptor 2-positive, NR not reported, ORR overall response rate, pCR pathologic complete response, PgR+ progesterone receptor-positive, TNBC triple-negative breast cancer, wtBRCA1/2 wild-type BRCA1/2

^aAll were HER2-negative, 15 were ER-negative, 17 were PgR-negative, and 14 were TNBC

^b100 were HER2-negative (5 HER2 status unknown), 86 were ER-negative (5 ER status unknown), 91 were PgR-negative (6 PgR status unknown), and 82 were TNBC

These studies indicate that patients with advanced or metastatic BC associated with gBRCA1/2m have high-clinical response rates to cisplatin and carboplatin, and those response rates are associated with longer PFS. It is not yet clear whether those clinical benefits will translate into longer OS.

Clinical outcomes in locally advanced and metastatic BC: PARP inhibitors

PARPi have received FDA approval for a variety of indications over the last 4 years. Olaparib has recently (January 2018) received FDA approval for the treatment of patients with gBRCA1/2m HER2-negative metastatic BC who were previously treated with chemotherapy in neoadjuvant, adjuvant, or metastatic settings.⁴⁹ This makes olaparib the first PARPi approved for the treatment of BC. Previously, 2014 saw the approval of olaparib for use as monotherapy in patients with deleterious or suspected deleterious gBRCA1/2m advanced OC who were treated with three or more prior lines of chemotherapy,⁵⁰ and in August 2017, olaparib received approval for the maintenance treatment of adult patients with recurrent epithelial ovarian, fallopian tube, or primary peritoneal cancer who experience a complete or partial response to platinum-based chemotherapy.⁵¹ Furthermore, niraparib gained FDA approval in March 2017 for the maintenance treatment of adult patients with recurrent epithelial ovarian, fallopian tube, or primary peritoneal cancer who experience a complete or partial response to platinum-based chemotherapy.^52,53 Rucaparib was approved in 2016 for treatment of patients with deleterious BRCA mutation-associated advanced OC who were treated with two or more chemotherapies.⁵⁴

Olarapib was the first PARPi to undergo extensive clinical testing in BC. Antitumour responses, measured by ORR, radiologic response, or tumour-marker response, were reported in early studies of women with previously treated and advanced BC or OC.^55–57 Later, an open-label, single-arm phase II basket study reported results for olaparib monotherapy in 62 women with BRCA1/2m-related advanced BC.⁵⁸ These patients were heavily pretreated, with a mean of 4.6 chemotherapy regimens in the metastatic setting, including 42 (68%) who had received prior platinum therapy (cisplatin or carboplatin). Partial responses were observed in 8 patients (13%) and stable disease ≥8 weeks was observed in 29 patients (47%). Response rates were lower in patients who had received prior platinum therapy (9.5%; 95% confidence interval (CI): 2.7–22.6) compared with those who had not (20%; 95% CI: 5.7–43.7). Although this difference was not statistically significant, it is consistent with the concept that platinum chemotherapy and PARPi may be targeting the same mechanistic pathways (i.e., DNA repair), and therefore may have some degree of cross-resistance.⁵⁸ A similar trend related to prior platinum chemotherapy was also observed for pancreatic and prostate cancer.⁵⁸ Of note, response to PARPi in OC is strongly associated with responsiveness to platinum chemotherapy; one study demonstrated a 61.5% ORR (by RECIST) to single-agent olaparib in platinum-sensitive OC, but no RECIST responses in platinum-refractory OC.⁵⁹ This concept is also supported by a phase II study in which patients with gBRCA1/2m-associated metastatic BC were treated with veliparib alone followed by combination with carboplatin at progression; only 1 of 30 patients responded to combination therapy after progression on veliparib.⁶⁰ A phase II study with olaparib is summarised in Table 2.⁵⁷

Table 2.

Selected phase II/III studies with PARP inhibitors in gBRCA1/2m locally advanced and metastatic breast cancer

Study	Disease	Phase	N	Treatment	Efficacy in patients with gBRCA1/2m
NCT0049423457	Recurrent, advanced BC with median 3 prior regimens and BRCA1/2 mutation (BRCA1/2m)	II	27	Olaparib 400 mg BID	ORR: 41% (11/27)
OlympiAD NCT0200062261	Metastatic BC with gBRCA1/2m	III	302	Olaparib 300 mg BID vs treatment of physician’s choice (TPC; capecitabine, eribulin, or vinorelbine)	ORR: 60% with olaparib vs 29% with TPC PFS: 7.0 months with olaparib vs 4.2 months with TPC (hazard ratio 0.58; 95% CI: 0.43–0.80; P < 0.001) DoR: 6.4 months with olaparib (IQR, 2.8–9.7) vs 7.1 months with TPC (IQR, 3.2–12.2)
ABRAZO NCT0203491665	Advanced BC with gBRCA1/2m following platinum or multiple cytotoxic regimens	II	84	Talazoparib 1 mg/day following platinum-based therapy (cohort 1) vs ≥3 platinum-free cytotoxic-based regimens (cohort 2)	ORR: 21% (95% CI: 10–35) in cohort 1 vs 37% (95% CI: 21–55) in cohort 2 PFS: 4.0 months (95% CI: 2.8–5.4) in cohort 1 vs 5.6 months (95% CI: 5.5–7.8) in cohort 2 DoR: 5.8 months (95% CI: 2.8–NR) in cohort 1 vs 3.8 months (95% CI: 2.8–10.1) in cohort 2 CBR: 38% (95% CI: 24–53) in cohort 1 vs 66% (95% CI: 48–81) in cohort 2
EMBRACA NCT0194577564	Advanced BC with gBRCA1/2m	III	431	Talazoparib 1 mg/day vs physician’s choice of chemotherapy (PCT; capecitabine, eribulin, gemcitabine, or vinorelbine)	ORR: 63% (95% CI: 56–69) with talazoparib vs 27% (95% CI: 19–36) with PCT PFS: 8.6 months (95% CI: 7.2–9.3) with talazoparib vs 5.6 (95% CI: 4.2–6.7) with PCT DoR: 5.4 months (95% CI: 2.8–11.2) with talazoparib vs 3.1 (95% CI: 2.4–6.7) with PCT CBR24: 69% (95% CI: 63–74%) with talazoparib vs 36% (95% CI: 28–45)
BRAVO NCT0190559266	Metastatic BC with gBRCA1/2m (and HER2-negative)	III	306 (est)	Niraparib vs physician’s choice of chemotherapy	ONGOING
Cancer Research UK67	Previously treated advanced OC or BC with gBRCA1/2m	II	78 n = 23 (BC)	Rucaparib	39% of BC patients (9/23) achieved stable disease ≥12 weeks
RUBY NCT0250504868	HER2-negative metastatic BC associated with BRCAness phenotype determined by “high-tumour genomic LOH” score and/or a somatic BRCAm	II	41 (est)	Rucaparib	ONGOING
Brocade 2 NCT0150660982	Locally recurrent or metastatic BC with gBRCA1/2m	II	284	Paclitaxel/carboplatin/veliparib (PCV) vs paclitaxel/carboplatin/placebo (PCP)	PFS: 14.1 months with PCV vs 12.3 months with PCP; hazard ratio 0.789 (95% CI: 0.536–1.162); P = 0.227 ORR: 78% with PCV vs 61% with PCP; P = 0.027
Brocade 3 NCT0216369483	Locally advanced or metastatic gBRCA1/2m BC (and HER2-negative)	III	500 (est)	Paclitaxel/carboplatin/veliparib vs paclitaxel/carboplatin/placebo	ONGOING

BC breast cancer, BID twice daily, CBR clinical benefit rate, CBR24 CBR at 24 weeks, CI confidence interval, DoR duration of response, est estimated, IQR interquartile range, LOH loss-of-heterozygosity, gBRCA1/2m germline BRCA1/2 mutation, OC ovarian cancer, ORR objective response rate, PARP poly(ADP-ribose) polymerase, PCP paclitaxel/carboplatin/placebo, PCV paclitaxel/carboplatin/veliparib, PCT physician’s choice chemotherapy, PFS progression-free survival, TNBC triple-negative breast cancer, TPC treatment of physician’s choice

More recently, the phase III OlympiAD study (NCT02000622) assessed olaparib monotherapy versus physician’s choice of chemotherapy (capecitabine, vinorelbine, or eribulin) for the treatment of metastatic BC in 302 patients with gBRCA1/2m (Table 2). At the December 2016 data cutoff, PFS by blinded independent central review was significantly longer with olaparib than with physician’s choice chemotherapy (7.0 versus 4.2 months; hazard ratio (HR) 0.58; 95% CI: 0.43–0.80; P < 0.001). An exploratory subgroup analysis of PFS was conducted, and although the study was not powered to detect differences among these subgroups, the HR favoured olaparib versus physician’s choice for patients with TNBC (HR 0.43; 95% CI: 0.29–0.63) and BRCA1/2m carriers of either subtype: BRCA1m (HR 0.54; 95% CI: 0.37–0.79) and BRCA2m (HR 0.68; 95% CI: 0.45–1.07).⁶¹ Another study also reported a doubling of ORR with olaparib versus physician’s choice chemotherapy (59.9% versus 28.8%, respectively) and greater change from baseline in target lesion size with olaparib (–45.1% versus –14.8%, respectively).⁶² A prespecified secondary analysis that examined health-related quality of life found that patients who received olaparib experienced significantly less and significantly delayed deterioration in global health-related quality of life, compared with physician’s choice chemotherapy.⁶³ In a similarly designed phase III study (EMBRACA, NCT01945775), talazoparib was compared with physician’s choice of therapy (capecitabine, eribulin, gemcitabine, or vinorelbine) in 431 patients with gBRCA1/2m advanced BC (Table 2). Talazoparib significantly prolonged PFS by blinded independent central review (8.6 months, 95% CI: 7.2–9.3 versus 5.6 months, 95% CI: 4.2–6.7; HR 0.542; P < 0.0001), and delayed time to deterioration in global health status/quality of life (HR 0.38; 95% CI: 0.26–0.55; P < 0.0001), compared with physician’s choice of therapy.⁶⁴ Other PARPi that are currently being evaluated in phase II/III clinical studies in advanced cancers related to BRCA1/2m, including BC (rucaparib, veliparib, and niraparib) are described in Table 2.^64–68

The results from studies of PARPi in advanced and metastatic BC suggest that these agents are active against BC in women with germline BRCA1/2 loss-of-function mutations, but response rates remain around 60%.⁶¹ Lack of response in BRCA1/2m carriers may be due to several mechanisms of resistance^69,70 (Fig. 1). Secondary somatic mutations that restore function of BRCA1 or BRCA2 have been reported to predict clinical resistance to PARPi in OC.^71,72 Furthermore, in mouse models of BRCA1m BC, two mechanisms of PARPi resistance have been reported: loss-of-53BP1, which is associated with partial restoration of homologous recombination,⁷³ and upregulation of genes that encode drug efflux pumps such as MDR1/P-glycoprotein-1.^69,74

Fig. 1.

PARP inhibitors: Some possible mechanisms of action and resistance. The left panel illustrates two possible mechanisms of action of PARPi. Upper pathway: Inhibition of PARP enzyme activity or catalytic inhibition interferes with the repair of single-strand breaks, leading to stalled DNA replication forks that requires HR repair. In HR-deficient tumours, such as those with BRCAm, PARP inhibition results in synthetic lethality. Lower pathway: PARP trapping refers to trapping of PARP proteins on DNA, which also leads to replication fork damage, but because this pathway utilises additional repair mechanisms, it is not restricted to tumours with HR deficiency. The right panel illustrates three possible mechanisms of resistance to PARPi. These include: (1) secondary mutations in BRCA genes that restore BRCA function and HR; (2) somatic mutation of TP53BP1, causing partial restoration of HR; and (3) increased PARPi efflux mediated by MDR1/P-glycoprotein 1, preventing the drugs from acting at the appropriate sites. The first two mechanisms of resistance restore HR and apply to PARP catalytic inhibition in HR-deficient tumours; whereas, the third mechanism applies to both mechanisms of action of PARPi. BRCAm BRCA mutation; HR homologous recombination; MDR1 multidrug resistance protein 1; p53BP1 tumour suppressor p53-binding protein 1; PARP poly(ADP-ribose) polymerase; PARPi PARP inhibitor

In addition to the monotherapy studies described above, some PARPi are being evaluated in combination with other therapies. While there is promising evidence of improved response in BRCA1/2m carriers,^60,75–80 this approach is challenging due to the associated dose-limiting myelosuppression.^78,79,81 The BROCADE 2 (NCT01506609),⁸² and BROCADE 3 (NCT02163694)⁸³ studies, which are randomised phase II and phase III investigations, respectively, are comparing paclitaxel and carboplatin with or without the PARPi veliparib in BRCA1/2m carriers with metastatic BC. These two studies may help characterise the role of combination therapy with PARPi. In addition, a new area of intense active research is the combination of PARPi with immune therapies to treat BRCA1/2m-related BC. The phase II MEDIOLA study reported that 20/25 patients with gBRCA1/2m and metastatic BC had disease control at 12 weeks under the combination of olaparib with the immunotherapy drug durvalumab.⁸⁴ Furthermore, the National Cancer Institute is currently recruiting patients for a randomised phase II study (NCT02849496) evaluating veliparib and atezolizumab, either as single agents or in combination, for treating patients with stage III–IV BRCA-related TNBC. Additional PARPi/immunotherapy studies are in development.

BRCA mutations in early-stage BC management

Although, BRCA status has not strongly influenced outcomes for stage I–III BC, the ability to identify BRCA-related cancers and the development of targeted therapies may lead to improved responses. Several studies have evaluated platinum salts in early-stage BRCA-related BC, mainly in patients with TNBC, and there are ongoing studies evaluating PARPi in this setting.

Clinical outcomes to platinum salts in early-stage BC

Byrski et al.⁸⁵ reported pathologic complete response (pCR) to neoadjuvant cisplatin in 65 of 107 women (61%) who had stage I–III TNBC and BRCA1m (Table 1). Although their study helped demonstrate the activity of cisplatin in BRCA1-related early BC, the patient population had extremely favourable characteristics, with 65% of women having node-negative disease and 46% having tumours ≤2 cm.⁸⁵ Furthermore, it was a single-arm study and did not compare neoadjuvant cisplatin to standard anthracycline-based chemotherapy; that question is being addressed by the ongoing randomised neoadjuvant INFORM/TBCRC 031 study (NCT01670500).

The GeparSixto/GBG 66 study (Table 1) evaluated the addition of carboplatin to standard paclitaxel, doxorubicin, and bevacizumab as neoadjuvant chemotherapy in previously untreated patients with stage II–III TNBC (as well as HER2-positive BC).^86,87 Patients with TNBC who received additional carboplatin had significantly higher pCR rates and longer disease-free survival;⁸⁸ however, a preplanned sub-analysis by gBRCA1/2m status noted the unexpected finding that the benefits of adding carboplatin were only significant in patients with wild-type BRCA1/2 (pCR 55.0% with carboplatin versus 36.4% without carboplatin; P = 0.004).⁸⁸ No significant pCR benefit was observed in the 50 patients with gBRCA1/2m (65.4% with carboplatin versus 66.7% without carboplatin; P = 0.92). Analysis of disease-free survival was similar, with carboplatin only improving disease-free survival in patients with wild-type BRCA1/2. One potential explanation for these results is that anthracycline-based chemotherapy was already effective in patients with BRCA-related BC, owing to the inability of the tumour cells to repair anthracycline-induced DNA damage.⁸⁸ Alternatively, the number of mutation carriers in the study may have been too small to permit detection of a treatment difference. The CALGB 40603 study also reported improved pCR with the addition of carboplatin to neoadjuvant therapy in stage II–III TNBC, although an analysis of response according to BRCA1/2m status has not been reported.^81,89 Thus, the role of BRCA testing to guide chemotherapy selection in this setting remains unclear.

Clinical outcomes to PARP inhibitors in early-stage BC

A feasibility study of neoadjuvant talazoparib administered prior to neoadjuvant chemotherapy in patients with gBRCA1/2m and HER2-negative BC reported decreases in tumour volume (median 88%; range 30–98%) in all 13 patients after 2 months of therapy.⁹⁰ These promising results led to the ongoing phase II study of single-agent talazoparib, with results expected in 2018 (NCT02282345).⁹¹ In addition, several PARPi are currently in phase II/III studies for adjuvant or neoadjuvant therapy in women with TNBC or HER2-negative BC and gBRCA1/2m, as described in Table 3.^91–93

Table 3.

Selected ongoing phase II/III studies with PARP inhibitors in gBRCA1/2m early-stage breast cancer

Study	Disease	Phase	N	Treatment	Status
OlympiA NCT0203282392	gBRCA1/2m with either TNBC or ER+ and/or PgR+ and HER2-negative BC	III	1500 (est)	Olaparib tablets vs placebo after surgery and at least 6 cycles of neoadjuvant or adjuvant chemotherapy	ONGOING
NCT0228234591	gBRCA1/2m stage I–III BC ≥1 cm, HER2-negative	II	36	Neoadjuvant talazoparib 1 mg (monotherapy) up to 6 months	ONGOING
BRE09-146 NCT0107497093	TNBC or gBRCA1/2m HER2-negative BC with residual disease after neoadjuvant chemotherapy	II	135	Cisplatin IV every 21 days for 4 cycles vs cisplatin (same dose) plus rucaparib on days 1, 2, 3 every 21 days for 4 cycles	ONGOING

BC breast cancer, ER+ oestrogen receptor-positive, est estimated, gBRCA1/2m germline BRCA mutation, HER2 human epidermal growth factor receptor 2, PgR+ progesterone receptor-positive, TNBC triple-negative BC

Local management and the role of prophylactic surgery

The risk of local recurrence after excision and radiotherapy is similar in patients with BRCA1/2m BC and those with sporadic BC.^2,6,94–96 Due to the ability of ionising radiation to induce DS breaks in DNA, and the involvement of BRCA1 and BRCA2 in repair of DS DNA, it has been suggested that BRCA1/2m-related tumours may be susceptible to the therapeutic and toxic effects of radiotherapy. However, no increased local reaction to radiation therapy has been observed in BRCA1 and BRCA2 mutation carriers with BC. Current guidelines indicate that patients with BRCA1/2m-related BC are not eligible for accelerated partial breast irradiation,¹⁹ but that is based on lack of data rather than evidence for increased toxicity or decreased efficacy with accelerated partial breast irradiation; patients with BRCA1/2m-related BC were excluded from accelerated partial breast irradiation studies because they carry a high risk for second primary BC.

In healthy women with BRCA1/2m, preventive salpingo-oophorectomy is recommended to reduce the risk of OC during the fifth decade of life.^19,97,98 The effects of salpingo-oophorectomy on preventing BC in healthy premenopausal women with BRCA1m remains controversial,^99,100 although the benefits in BRCA1/2m carriers are established. In premenopausal women with a recent diagnosis or history of BC and BRCA1/2m, several large studies have demonstrated that oophorectomy confers strong reductions in risk of subsequent BC, as well as mortality.^100–106 Metcalfe et al.¹⁰⁵ studied the benefits of oophorectomy soon after a diagnosis of BC in BRCA1/2m carriers (mean age at diagnosis ~42 years). In women with a new primary diagnosis of BC who had bilateral oophorectomy, the adjusted HR for BC-related death was 0.38 (95% CI: 0.19–0.77) for BRCA1m carriers and 0.57 (95% CI: 0.23–1.43) for BRCA2m carriers. Interestingly, the reduction in risk associated with oophorectomy was greater in women with ER-negative BC (HR 0.07; 95% CI: 0.01–0.51) than in women with ER-positive BC (HR 0.76; 95% CI: 0.32–1.78).¹⁰⁵ On the basis of these findings, the authors recommend that premenopausal women with newly diagnosed BC be tested for BRCA1/2m and, if mutation-positive, offered salpingo-oophorectomy as part of their treatment plan; however, this approach is controversial and not widely adopted.

Hormone receptor status, BRCA mutation status, and response to PARP inhibitors

A multinational epidemiologic study characterised the receptor status of breast tumours from women with gBRCA1m (n = 3797) or gBRCA2m (n = 2392)¹⁰⁷. Among BRCA1m carriers, 22% of tumours were ER-positive and 21% were PgR-positive, and among BRCA2m carriers, 77% were ER-positive and 64% were PgR-positive. There is evidence, however, that ER-positive tumours arising in BRCA1/2m carriers have different morphologic features than ER-positive tumours arising in non-carriers, with those in carriers more frequently exhibiting a higher histologic grade, higher oncotype recurrence score, and more often classified as luminal B by gene expression profiling.^16,107–109 Furthermore, the percentage of ER-positive BC increases with increasing patient age in BRCA1m carriers, but decreases with increasing age in BRCA2m carriers.^16,107

Although a substantial percentage of patients with BRCA1/2m BC are also hormone receptor-positive, the influence of hormone receptor-positive disease on DNA-targeted therapy efficacy is still being evaluated. One clue may come from observations concerning loss-of-heterozygosity of the wild-type allele in BRCA1 carriers, which is observed at a similar rate in ER-positive and ER-negative tumours, thereby suggesting a similar degree of impairment to the homologous recombination pathway.^15,16 Clinical data to address this question are limited, but three olaparib studies reported outcomes in patients with ER-positive BC. In the ICEBERG 1 study (NCT00494234), 12 patients in the 400 mg olaparib arm had ER-positive disease and treatment responses were observed.⁵⁷ In another study (Study 42), responses to olaparib as late-line therapy were observed in 4 of 32 patients (12.5%) with ER-positive disease and 4 of 30 (13.3%) with ER-negative disease.⁵⁸ The phase III OlypmiAD study enroled patients with either hormone receptor-positive or TNBC. Recently, exploratory sub-group analyses for PFS demonstrated that the hazard ratio favoured olaparib versus chemotherapy for BRCA carriers of either subtype.⁶¹ In addition, the ABRAZO study showed similar response rates to talazoparib for BRCA1/2m carriers with metastatic ER-positive and TNBC: 29% and 26%, respectively.⁶⁵ Although larger studies are needed, these results indicate that ER-positive BC in BRCA1/2m carriers are responsive to PARPi.

Beyond BRCA mutations: BRCAness and scoring systems

Another evolving aspect of testing to predict responsiveness to agents that interfere with DNA repair is the use of assays or scoring schemes that indicate the activity level of the homologous recombination pathway.¹¹⁰ Tumours that exhibit clinical and biological features of gBRCA1/2m disease, despite not having a gBRCA1/2m, are thought of as having BRCAness.¹¹¹ BRCA1/2 proteins are essential components of the homologous recombination pathway for repair of DS breaks in DNA; loss-of-homologous recombination in the absence of a gBRCA1/2m represents one form of BRCAness. For example, BRCAness may arise as a result of somatic loss or epigenetic silencing of tumour BRCA in the absence of gBRCA1/2m.⁴³ In addition, numerous other proteins participate in the homologous recombination pathway, and mutations in their corresponding genes may also confer BRCAness and subsequently, response to platinum agents or PARPi.

Current data support the hypothesis that tumours deficient in homologous recombination are susceptible to PARP inhibition.³⁹ For example, olaparib demonstrated activity in a phase II study in patients with metastatic, castration-resistant prostate cancer and germline or somatic mutations in DNA repair genes.²⁷ Among 49 evaluable patients, 16 (33%) had a response and 12 remained on therapy for >6 months. Post hoc analysis in prospectively collected biopsy samples demonstrated a response to single-agent olaparib in 14 of 16 patients who were biomarker-positive, defined as having a homozygous deletion or biallelic deleterious mutation of a DNA repair gene (e.g., BRCA2, ATM, CHEK2). Among biomarker-negative patients, only 2 of 33 (6%) had a response to olaparib.²⁷

Rather than sorting the tangle of how each genetic variation might influence responsiveness to treatment, research has focused on the development of scoring systems intended to quantify the competency of the homologous recombination pathway. Currently there are three prominent scoring systems: homologous recombination defect large-scale transition (HRD-LST), HRD-loss-of-heterozygosity (HRD-LOH), and HRD-telomeric allelic imbalance (HRD-TAI).^112–114 In the TBCRC 009 study, the sum of the HRD-LOH and HRD-LST scores was associated with response to platinum therapy in patients with metastatic TNBC (HRD-LOH/HRD-LST score of 12.68 for responders versus 5.11 for non-responders; P = 0.032).⁴⁸ This scoring approach is also being explored in the neoadjuvant setting. The HRD-TAI score¹¹⁴ and an unweighted combination of all three HRD scores¹¹⁵ predicted responsiveness to neoadjuvant platinum therapies in women with TNBC. By contrast, the HRD score failed to identify which TNBC patients with metastatic disease had a better response to platinum versus docetaxel during the TNT study (discussed earlier),⁴⁵ although analysis was performed on primary rather than metastatic BC samples.

Using a high-depth whole-genome sequencing approach rather than a targeted sequencing approach, another tool called HRDetect was developed as a predictor of BRCA1 and BRCA2 deficiency based on mutational signatures. A lasso logistic regression model identified six distinguishing mutational signatures and HRDetect identified BRCA1/2-deficient tumours with 98.7% sensitivity. In addition, in a cohort of 560 individuals with BC, HRDetect identified 22 tumours with somatic loss-of-BRCA1 or BRCA2 and 47 tumours with functional BRCA1/2 deficiency, none of which had mutations detected with standard analysis. Thus, integrating a method such as HRDetect or other deep sequencing approaches into the clinical assessment process could potentially identify a larger proportion of patients who may have selective therapeutic sensitivity to PARPi.¹¹⁶ Recently, an elevated HRDetect score was associated with response to platinum chemotherapy in an observational study of patients with advanced BC;¹¹⁷ however, HRDetect has not yet been correlated with therapeutic responses to PARPi. Another recent study evaluated a novel gene expression signature-generating algorithm to predict therapeutic response to PARPi.¹¹⁰ The authors demonstrated that the gene expression signatures may be used to identify PARPi-sensitive cancer cell lines, primary patient-derived tumour cells, and patient-derived xenografts. In addition, these gene expression profiles were found to outperform currently accepted clinical biomarkers of response, including BRCA1/2m status.

At this time, scoring systems are still investigational and require further validation before they can be considered for routine clinical use. These scoring systems, or similar methods, may hold the promise of a relatively simple way to incorporate the status of BRCA mutations, BRCA silencing, and non-BRCA mutations into a single score that indicates the competency of homologous recombination and predicts response to platinum-based therapies. Further studies are also needed to determine whether any of these systems predict response to PARPi.

Conclusion

BRCA1/2 mutations occur in women with all BC subtypes, but more commonly in those with early onset or a suggestive family history. Recent studies have found evidence that BRCA1/2m carriers with BC have high rates of response to platinum salts in the metastatic and neoadjuvant settings; currently, most of the data were derived from BRCA1/2m carriers with TNBC. For BRCA1/2m carriers with metastatic TNBC, platinum chemotherapy has been shown to be superior to docetaxel in the first-line setting. For BRCA1/2m carriers in the early setting, it is not yet clear whether platinum agents are superior to, or provide additional benefit to conventional anthracycline-based or taxane-based chemotherapy. However, for BRCA1/2m carriers with newly diagnosed TNBC for whom an anthracycline is contraindicated, a platinum-based regimen is reasonable. For BRCA1/2m carriers with hormone receptor-positive BC, standard chemotherapy should likely be used until more data regarding the efficacy of platinum chemotherapy are available.

Evidence also supports BRCA1/2m status as a predictor of responsiveness to PARPi in patients with metastatic BC. For BRCA1/2m carriers with metastatic disease and fewer than two chemotherapy regimens in the metastatic setting, use of the PARPi olaparib results in a significantly longer PFS and better quality of life than standard chemotherapy. Now that the first PARPi has been approved in BC, olaparib can be recommended for BRCA1/2m carriers with HER2-negative metastatic BC. Ongoing studies will address whether PARPi may also provide benefit for BRCA1/2m carriers in the early setting, and future studies should seek to determine the relative efficacy of platinum agents compared with PARPi in the metastatic setting, as well as the efficacy of platinum chemotherapy after progression with PARPi.

Studies assessing the benefit of combining PARPi with chemotherapy will need to be compared to treatment with PARPi monotherapy; given the myelosuppression observed when combining PARPi with chemotherapy. These will need to compare continuous treatment with PARPi monotherapy to combinations of chemotherapy with either a reduced dose or intermittent PARPi schedule. Current research is focused on identifying larger subsets of patients with similar responsiveness to these therapies, such as those with de novo somatic BRCA mutations, mutations in other genes associated with the homologous recombination pathway for DNA repair, or those exhibiting BRCA-associated mutational signatures or other evidence of homologous recombination deficiency.

BRCA testing was previously used in BC patients solely to predict the risk of future cancers and guide surgical therapies. As mutation status increasingly informs optimal management of BC, including choice of systemic therapy, efforts to identify all BC patients with germline or somatic BRCA mutations will become even more essential. Given the availability of comprehensive and affordable gBRCA1/2m testing and the utility of the information for treatment options, it may be reasonable to consider genetic testing more widely than past criteria have allowed. The recent test-to-treat criteria (Box 1) acknowledges the importance of not overlooking patients with metastatic BC who may have gBRCA1/2m, and may benefit from PARPi treatment. The recent oncologist-led mainstream approaches to genetic testing may allow greater access to testing and more complete data for these analyses in the near future.¹¹⁸

Author contributions

AstraZeneca conforms to the guidelines set forth by GPP3, the International Committee of Medical Journal Editors for Authorship (ICMJE), and the International Society of Medical Publication Professionals (ISMPP). The authors meet all criteria for authorship as set forth by these guidelines.

Competing interests

N.M.T. reports research funding from Ambry Genetics (no salary support). J.E.G. reports consulting for Biogen, Helix, Novartis (spouse), GTx (spouse), and research support from Ambry Genetics, Novartis (spouse).