Disruption of the psychiatric risk gene Ankyrin 3 enhances microtubule dynamics through GSK3/CRMP2 signaling

Abstract

The ankyrin 3 gene (ANK3) is a well-established risk gene for psychiatric illness, but the mechanisms underlying its pathophysiology remain elusive. We examined the molecular effects of disrupting brain-specific Ank3 isoforms in mouse and neuronal model systems. RNA sequencing of hippocampus from Ank3+/− and Ank3+/+ mice identified altered expression of 282 genes that were enriched for microtubule-related functions. Results were supported by increased expression of microtubule end-binding protein 3 (EB3), an indicator of microtubule dynamics, in Ank3+/− mouse hippocampus. Live-cell imaging of EB3 movement in primary neurons from Ank3+/− mice revealed impaired elongation of microtubules. Using a CRISPR-dCas9-KRAB transcriptional repressor in mouse neuro-2a cells, we determined that repression of brain-specific Ank3 increased EB3 expression, decreased tubulin acetylation, and increased the soluble:polymerized tubulin ratio, indicating enhanced microtubule dynamics. These changes were rescued by inhibition of glycogen synthase kinase 3 (GSK3) with lithium or CHIR99021, a highly selective GSK3 inhibitor. Brain-specific Ank3 repression in neuro-2a cells increased GSK3 activity (reduced inhibitory phosphorylation) and elevated collapsin response mediator protein 2 (CRMP2) phosphorylation, a known GSK3 substrate and microtubule-binding protein. Pharmacological inhibition of CRMP2 activity attenuated the rescue of EB3 expression and tubulin polymerization in Ank3-repressed cells by lithium or CHIR99021, suggesting microtubule instability induced by Ank3 repression is dependent on CRMP2 activity. Taken together, our data indicate that ANK3 functions in neuronal microtubule dynamics through GSK3 and its downstream substrate CRMP2. These findings reveal cellular and molecular mechanisms underlying brain-specific ANK3 disruption that may be related to its role in psychiatric illness.

Introduction

Large-scale genomic studies are providing a clearer picture of the genetic architecture of psychiatric illness. Genetic variation in ANK3 is associated with several psychiatric disorders, including bipolar disorder (BD) and autism spectrum disorders (ASD)^1–11. Human postmortem brain studies demonstrate that carriers of ANK3 alleles associated with BD have lower ANK3 expression at the transcript and protein levels^12,13, suggesting that decreased expression of ANK3 contributes to disease. Despite strong genetic evidence that ANK3 contributes to psychiatric illness¹⁴, the precise mechanism is unknown.

ANK3 encodes the ankyrin-G scaffolding protein that anchors integral membrane proteins to the cytoskeleton^15,16. There are several protein isoforms of ankyrin-G due to alternative splicing and alternative starting exons^13,17. These isoforms have unique functions and tissue distribution, including isoforms that are only expressed in brain. Genomic regions associated with BD span exon 1b of ANK3 and the intron upstream of exon 37, exons that are only present in brain-specific isoforms. Furthermore, rare mutations identified in ASD patients are predominantly located within the brain-specific exon 37^1–8. The brain-specific isoforms are primarily known for their function in formation of the neuron axon initial segment (AIS) and clustering of ion channels at the nodes of Ranvier along axons^18,19. Interestingly, BD patients carrying a BD-associated risk allele for ANK3 have a decreased fractional anisotropy in the uncinate fasciculus, which is an indication of impaired axon function or axonal damage in these forebrain connections¹¹.

Recent evidence implicates cytoskeleton dysfunction in psychiatric illness^20–22. Microtubules are components of the cytoskeleton that contribute to the morphology of axons and dendrites in neurons, and facilitate transport of cellular cargo. They are composed of α and β tubulin heterodimers that continuously polymerize and depolymerize at the microtubule plus end (i.e., microtubule dynamics), leading to continuous growth and shrinkage of microtubules²³. ANK3 is reported to bind microtubules directly or through binding of microtubule-associated proteins at the plus end stabilizing cap^24–26 that prevents depolymerization. The interaction between ANK3 and microtubules provides a biological basis for examining brain-specific Ank3 in the regulation of microtubule dynamics.

We have previously demonstrated that brain-specific Ank3 isoforms regulate psychiatric-related behaviors in mice, and alterations in these behaviors in Ank3+/− mice are reversed by the mood stabilizer lithium^27,28. An important target of lithium is GSK3, which is implicated in psychiatric illness by animal studies^29,30. Among the downstream substrates of GSK3, CRMP2 has emerged as a prime target for regulation of microtubule dynamics and stability^31–33. In its unphosphorylated state, CRMP2 binds tubulin heterodimers and stabilizes the plus end of microtubules³⁴; however, upon phosphorylation by GSK3, CRMP2 activity is suppressed and binding to microtubules is reduced. In Caenorhabditis elegans, the homologs of ANK3 (UNC-44) and CRMP2 (UNC-33) are required to organize microtubules in neurons³⁵. Therefore, it is possible that ANK3 modulates microtubule dynamics through a mechanism involving CRMP2 signaling.

In the current study, we investigated the molecular impact of reducing expression of brain-specific Ank3 isoforms, based on the patient genetic and expression studies noted above that implicate reduced expression of these isoforms in disease. Using RNA sequencing, biochemical, and live cell-imaging methods in mouse and neuronal model systems, we determined that brain-specific Ank3 deficiency is associated with enhanced microtubule dynamics (i.e., increased tubulin polymerization/depolymerization). Furthermore, we demonstrate that microtubule changes induced by brain-specific Ank3 repression are rescued by lithium or a selective inhibitor of GSK3 through a CRMP2-dependent mechanism. Our findings establish for the first time that brain-specific Ank3 is important for maintaining proper microtubule dynamics through GSK3/CRMP2 signaling.

Materials and Methods

See Supplementary Information for detailed methods.

Animals

Male Ank3+/− mice with heterozygous disruption of Ank3 exon 1b¹⁸ were crossed to female C57BL/6J mice (Jackson Laboratory, Bar Harbor, ME) to generate Ank3+/− and Ank3+/+ progeny. Experiments were conducted in accordance with the National Institutes of Health guidelines and approval of the Institutional Animal Care and Use Committees of Massachusetts Institute of Technology and Massachusetts General Hospital.

RNA sequencing and data analysis

Hippocampal RNA from 10 male 16-20wk old mice per genotype was pooled for RNA sequencing. Trimmed sequence reads were aligned onto the Mus musculus GRCm38/mm10 genome and analyzed using the Tuxedo package within the GenePattern platform (https://genepattern.broadinstitute.org)³⁶. Differentially expressed genes were identified based on minimum 1.2-fold change and uncorrected P ≤ 1 × 10⁻³. The Ingenuity Pathway Analysis package was used to identify overrepresented biological pathways, with a focus on ‘Canonical Pathways’ and ‘Diseases and Functions’.

Live cell imaging

Mouse primary forebrain neurons were generated from P0 Ank3+/+ and Ank3+/− mice. Cells were transfected with mPA-GFP-EB3-7 (Addgene, Cambridge, MA) at DIV11-12 and imaged at DIV14. Axon segments 70–150 μm in length were imaged starting ~60 μm from the soma at 2 s intervals for 300 s. EB3 comet trajectory was manually traced from kymographs generated using the ImageJ Kymolyzer macro³⁷ to calculate comet length, duration, and velocity.

Western blot

Protein lysates from neuro-2a cells or hippocampal tissue from male mice were separated by SDS-PAGE and blotted onto PVDF membranes, probed with specific primary antibodies and HRP-linked secondary antibodies (Supplementary Table 1), followed by electrochemiluminescent detection. Protein expression was quantified by normalizing to GAPDH, and phosphorylated or acetylated protein expression by normalizing to the corresponding total protein.

CRISPR-mediated Ank3 transcriptional repression

Single guide RNA (sgRNA) sequences were designed to target mouse Ank3 exon 1b using the CRISPR Design Tool (http://crispr.mit.edu) (Supplementary Table 2). Ank3-targeting and non-targeting control sgRNAs were cloned into the sgRNA(MS2)-EF1α plasmid (gift from Dr. Feng Zhang)³⁸.

Cell culture

Mouse neuro-2a cells (ATCC, Manassas, VA) were dual transfected with the pHAGE-EF1α-dCas9-KRAB transcriptional repressor plasmid³⁹ (Addgene) and sgRNA(MS2)-EF1α plasmid expressing Ank3-targeting or control sgRNA. For drug experiments, cells were treated for 1 h with the GSK3 inhibitors lithium (Sigma-Aldrich, St. Louis, Mo) or CHIR99021 (LC Laboratories, Woburn, Ma), or for 24 h with the CRMP2 inhibitor lacosamide (Sigma-Aldrich, St. Louis, Mo).

RT-qPCR

SYBR Green qPCR was performed using 1 μg cDNA using gene and Ank3 isoform-specific primers (Supplementary Table 3)⁴⁰. Expression was normalized to beta-2-microglobulin.

Tubulin polymerization assay

Neuro-2a cells were lysed to obtain soluble and insoluble protein fractions for western blot detection of α-tubulin^41,42.

Statistical analysis

Statistical analyses were performed by unpaired Student’s t test, or one- or two-way ANOVA followed by post hoc tests, using StatView version 5 or SPSS version 16. Sample sizes were determined based on previously published literature and our preliminary data. Significance threshold was set at P < 0.05.

Results

RNA sequencing identifies expression changes in microtubule-related pathways in Ank3+/− mouse hippocampus

RNA sequencing analysis was performed to identify genes with altered expression in hippocampus from Ank3+/− mice, which exhibit 50% reduced expression of brain-specific Ank3 compared to wild-type Ank3+/+ mice (Supplementary Figure 1). On the basis of our targeted read depth of 25 million reads, we expected the RNA sequencing analysis to detect predominantly abundant genes. A total of 282 genes were significantly differentially expressed (fold change ≥1.2, uncorrected P ≤ 1 × 10⁻³) between Ank3+/− and Ank3+/+ hippocampus (102 upregulated, 180 downregulated; Supplementary Table 4). Ingenuity Pathway Analysis of the differentially expressed genes identified significant overrepresentation of the Axonal Guidance Signaling canonical pathway (17 genes; corrected P = 0.0088). Among the Disease & Function pathways, the Microtubule Dynamics pathway was most significantly enriched (34 genes; uncorrected P = 6.7 × 10⁻⁵). Ten of the 17 Axonal Guidance Signaling genes were also annotated as Microtubule Dynamics genes. The Microtubule Dynamics pathway is categorized within a higher-level function of Cellular Assembly and Organization, which contains three other pathways that were overrepresented among the 282 differentially expressed genes, although with weaker statistical evidence: Fusion of Vesicles (6 genes, P = 2.0 × 10⁻⁴), Organization of Cytoskeleton (36 genes, P = 3.1 × 10⁻⁴), and Extension of Cellular Protrusions (10 genes, P = 3.3 × 10⁻⁴). Many of the genes in the latter three pathways overlap the Microtubule Dynamics and Axonal Guidance Signaling pathways, resulting in a total of 47 genes across the five pathways (Table 1). As the identified pathways represent cellular functions requiring microtubules, we focused subsequent experiments on the role of Ank3 in microtubule dynamics.

Table 1.

Microtubule-related pathways enriched for genes that are differentially expressed between Ank3+/− and Ank3+/+ mouse hippocampus

Gene	Fold change ( Ank3 +/− vs Ank3 +/+)	Axonal guidance signaling	Microtubule dynamics	Fusion of vesicles	Organization of cytoskeleton	Extension of cellular protrusions
AGT	1.30		X		X	X
ANKRD27	−1.30		X		X	X
ARHGAP33	−1.26		X		X
BAG3	−1.48	X			X
BCAR1	−1.26		X		X	X
BCR	−1.25		X		X
BSN	−1.20		X	X	X
CACNA1A	−1.21	X	X		X
CAV2	1.30			X
CDK18	−1.31		X		X
DPYSL5	−1.25	X	X		X	X
DSP	1.26		X		X
DVL2	−1.40		X		X
E2F4	−1.29		X		X
EPHB6	−1.20	X	X		X
FLNB	−1.24				X
FOXO6	−1.39		X		X
GAS2L1	−1.25		X		X
GPR116	1.23		X		X
HDAC6	−1.26		X	X	X
HTR1A	−1.32		X		X
IDE	−1.37		X		X
LAMP2	1.21			X
LIMK1	−1.24	X	X		X	X
LMTK3	−1.24		X		X
MAOA	1.30		X		X
MAP2K2	−1.22	X
MATK	−1.29		X		X
MYH9	−1.27		X		X	X
NTNG1	1.40	X	X		X	X
PLCB4	1.81	X
PLC1	−1.23	X
PLCH2	−1.22	X
PLXNA1	−1.21	X
PLXND1	−1.32	X	X		X
PRKCD	2.86	X	X		X
RIMS4	−1.48		X		X
RRAS2	1.48	X
SEMA5A	1.24	X
SLIT3	−1.21	X	X		X
SMURF1	−1.27		X		X	X
STX1A	−1.29			X
STX8	1.49			X
TGFB3	−1.48		X		X
ULK1	−1.29		X		X	X
UNC5B	−1.24	X	X		X	X
WNT7A	−1.37	X	X		X

Enhanced microtubule dynamics in Ank3+/− mouse hippocampus

To obtain support for microtubule defects in Ank3+/− mouse brain, we evaluated the expression of the EB3 end-binding protein. EB3 modulates stability at the microtubule plus end, serving as a marker of growing microtubules⁴³, and is reported to directly interact with Ank3^24–26. Western blot analysis of EB3 in hippocampus isolated from Ank3+/+ and Ank3+/− mice determined that expression was increased 1.5-fold in Ank3+/− mice compared to Ank3+/+ mice (P < 0.001, Fig. 1). The substantial elevation in EB3 expression suggests that reduction of brain-specific Ank3 is associated with enhanced microtubule dynamics (i.e., increased polymerization/depolymerization of tubulin at the plus end).

Fig. 1. Increased expression of EB3 in Ank3+/− mouse hippocampus.

Top: Representative western blot of EB3 and GAPDH reference protein in hippocampal tissue from Ank3+/+ and Ank3+/− mice. Bottom: Quantification of EB3 expression normalized to GAPDH expression. The data were analyzed using two-tailed Student’s t test, Ank3+/+ n = 12; Ank3+/− n = 13. The data are presented as mean ± s.e.m. ***P < 0.001

Brain-specific Ank3 reduction impairs microtubule elongation in axons

To directly monitor the effect of Ank3 reduction on the dynamic properties of microtubules, we performed live-cell imaging of GFP-tagged EB3 in mouse primary neurons. As microtubules polymerize, EB3-GFP puncta at the plus end cap appear as mobile comets, which dissipate when the microtubules depolymerize⁴⁴. We analyzed EB3 comet length, duration, and velocity in axons of DIV14 primary neurons from Ank3+/+ and Ank3+/− neonatal mice (Fig. 2a). The trajectory length of EB3 comets was ∼15% shorter in axons of Ank3+/− neurons compared to Ank3+/+ neurons (Fig. 2b, P = 0.002), indicating decreased microtubule elongation. EB3 comets in Ank3+/− axons were detected in ∼15% fewer frames of the 300 s time-lapse imaging video compared to the comets in Ank3+/+ axons (Fig. 2c, P = 0.003), suggesting decreased duration of EB3 bound to microtubule plus ends. The velocity of EB3 comets did not differ between Ank3+/− axons and Ank3+/+ axons, indicating that the rate of microtubule polymerization was unchanged (Fig. 2d, P > 0.05). These data suggest an increase in the dynamics of microtubules with an overall reduction of microtubule elongation in Ank3+/− axons compared to Ank3+/+ axons.

Fig. 2. Reduced brain-specific Ank3 expression is associated with enhanced microtubule dynamics in axons of mouse primary neurons.

a Representative kymographs from live-cell imaging of EB3 comets in DIV14 primary neurons from Ank3+/+ (left) and Ank3+/− (right) P0 neonatal mice. Top: EB3-GFP puncta present in the axon. Scale bar = 10 µm. Bottom: Kymographs show the movement of EB3 comets. The x-axis represents the position along the axon and the y-axis represents time (300 s). White arrows indicate representative comet traces. Quantification of EB3 comet (b) length, (c) duration, and (d) velocity. The data were collected from three independent experiments. Ank3+/+, n = 245 comets from 27 axons of 6 mice; Ank3+/−, n = 220 comets from 14 axons of 7 mice. The data were analyzed using two-tailed Student’s t test. The data are presented as mean ± s.e.m. **P < 0.01

Establishment of a neuronal model of brain-specific Ank3 repression

We established a cellular model to investigate the mechanism underlying impaired microtubule elongation associated with brain-specific Ank3 reduction. Mouse neuro-2a cells were dual-transfected with a CRISPR/dCas9 KRAB repressor and either a sgRNA targeting Ank3 exon 1b or a control sgRNA (Fig. 3a). Fourteen sgRNA sequences were screened for efficacy of Ank3 exon1b repression (Supplementary Figure 2). One sgRNA (#7) was selected and selective repression of Ank3 exon 1b was verified (Fig. 3b; Supplementary Information). Western blot analysis indicated that Ank3 repression elevated EB3 expression by 40% compared to control cells (Fig. 3c, P < 0.01). This aligns with our earlier observation of increased EB3 expression in hippocampus from Ank3+/− mice compared to Ank3+/+ mice (Fig. 1), thereby validating our neuronal model system.

Fig. 3. CRISPR/dCas9 mediated repression of brain-specific Ank3 in mouse neuro-2a cells.

a Top: Schematic representation of the plasmids used for repression of brain-specific Ank3. pHAGE-EF1α_dCas9_KRAB expressed the deactivated Cas9 fused to the KRAB transcriptional repressor. Lenti-sgRNA(MS2)_EF1α expressed the control sgRNA or an sgRNA targeting Ank3 exon 1b. See Supplementary Figure 2 for qPCR screening of sgRNA sequences for efficiency of Ank3 exon 1b repression. Bottom: Schematic representation of the experimental design. Neuro-2a cells were transfected with the two plasmids, followed by puromycin and zeocin selection, and cell harvest for protein extraction. b Expression of Ank3 exon 1b, exon 1e, exon 1 f, and exon 1 s was measured by qPCR using isoform-specific primers in neuro-2a cells expressing the control sgRNA or the Ank3-targeting sgRNA. Expression was normalized to beta-2-microglobulin and presented as percent of the control sgRNA for each starting exon. c Transcriptional repression of brain-specific Ank3 in neuro-2a cells alters EB3 expression. Top: Representative western blots of EB3 and GAPDH. Bottom: Quantification of EB3 expression normalized to GAPDH. d Transcriptional repression of brain-specific Ank3 in neuro-2a cells alters acetylation of α-tubulin. Top: Representative western blots of acetylated α-tubulin (Acetyl) and total α-tubulin (Total). Bottom: Quantification of acetylated α-tubulin expression normalized to total tubulin. e Transcriptional repression of brain-specific Ank3 in neuro-2a cells alters the ratio of soluble:polymerized tubulin. Top: Representative western blots of α-tubulin in soluble (S) and polymerized (P) protein fractions, and in total cell lysate (Total). Bottom left: Quantification of the ratio of soluble:polymerized tubulin. Bottom right: Quantification of total tubulin normalized to GAPDH. Western blot data were averaged from three independent experiments with three biological replicates per group in each experiment. Control, non-targeting sgRNA; Ank3, sgRNA targeting Ank3 exon 1b. Data were analyzed using two-tailed Student’s t test. Data are presented as mean ± s.e.m. *P < 0.05, **P < 0.01, n.s. indicates not significant

Repression of brain-specific Ank3 in cells reduces polymerized tubulin

To assess the enhancement of microtubule dynamics associated with brain-specific Ank3 repression, we examined characteristics of tubulin (i.e., acetylation and polymerization state) in our neuronal model system. Tubulin acetylation is an indicator of the overall stability of microtubules, such that microtubules that are more stable and resistant to turnover have higher acetylation levels, whereas more microtubules that are more dynamic and susceptible to turnover have lower acetylation levels^45,46. Western blot analysis revealed a 45% reduction of acetylated tubulin normalized to total tubulin in Ank3-repressed cells compared to control cells (Fig. 3d, P < 0.05), suggesting microtubules are more dynamic when Ank3 is repressed. Further, western blot analysis of tubulin in soluble and polymerized protein fractions^41,47–49 determined that brain-specific Ank3 repression led to an increase in the amount of tubulin in the soluble protein fraction and a concomitant decrease in the polymerized fraction compared to control cells. This resulted in a 1.4-fold increase in the ratio of soluble to polymerized tubulin (Fig. 3e, P < 0.01), indicating a shift in equilibrium from microtubule-associated tubulin towards free tubulin as a result of brain-specific Ank3 repression. This shift was not due to changes in total tubulin expression between Ank3-repressed and control cells (Fig. 3e, P > 0.05). These results are consistent with increased turnover at the microtubule plus ends due to repression of brain-specific Ank3.

GSK3 inhibition rescues microtubule changes associated with Ank3 repression

To examine the molecular mechanisms underlying enhanced microtubule dynamics in our neuronal model system, we investigated the effects of lithium treatment, which we previously demonstrated reverses behavioral abnormalities of brain-specific Ank3+/− mice^27,28. In addition, to determine whether any effects of lithium are mediated by its known target GSK3, we also investigated CHIR99021, a highly selective inhibitor of both GSK3α and GSK3β ⁵⁰. Control and Ank3 exon 1b repressed neuro-2a cells treated with vehicle, 1 mM lithium chloride, or 1 μM CHIR99021 for 1 h (Fig. 4a) were assessed for EB3 expression and tubulin polymerization. While Ank3 repression increased EB3 expression by ~ 50% compared to control in vehicle-treated cells (Fig. 4b, post hoc P < 0.01), as expected based on our previous experiment (Fig. 3e), the increase was attenuated by lithium and CHIR99021 treatment (Fig. 4b, both post hoc P > 0.05). Similarly, while Ank3 exon 1b repression increased the ratio of soluble:polymerized tubulin by 1.35-fold compared to control in vehicle-treated cells (Fig. 4c, post hoc P < 0.01), the ratio was normalized by treatment with lithium or CHIR99021 (Fig. 4c, both post hoc P > 0.05). To rule out the possibility that the rescue was due to normalizing expression of Ank3, we confirmed that Ank3 expression did not differ after treatment with lithium or CHIR99021 compared to vehicle (Supplementary Figure 3). These results indicate that GSK3 is involved in changes to microtubule dynamics induced by repression of brain-specific Ank3.

Fig. 4. Changes in EB3 expression and tubulin polymerization induced by brain-specific Ank3 repression are normalized by inhibition of GSK3.

a Schematic representation of the experimental design. Mouse neuro-2a cells were transfected with pHAGE-EF1α-dCas9-KRAB repressor plasmid and sgRNA(MS2)_EF1α plasmid expressing either the non-targeting control sgRNA or the sgRNA targeting Ank3 exon 1b, followed by puromycin and zeocin selection, and treatment with lithium (1 mM), CHIR99021 (1 µM), or DMSO vehicle for 1 h prior to cell harvest for protein extraction. b Top: Representative western blot of EB3 and GAPDH. Bottom: Quantification of EB3 expression normalized to GAPDH. Two-way ANOVA, drug effect F_(2,30) = 4.217 P = 0.02, Ank3 repression effect F_(1,30) = 4.137 P = 0.05, interaction F_(2,30) = 4.217, P = 0.02. c Top: Representative western blot of α-tubulin in soluble (S) and polymerized (P) protein fractions. Bottom: Quantification expressed as the ratio of α-tubulin in soluble and polymerized fractions. Two-way ANOVA, drug effect F_(2,28) = 2.460 P = 0.10, Ank3 repression effect F_(1,28) = 3.281 P = 0.08, interaction F_(2,28) = 5.463 P = 0.01. d Top: Representative western blot of GSK3α/β phosphorylation at serine 21 (GSK3α-pS21), serine 9 (GSK3β-pS9), tyrosine 279 (GSK3α-pY279), and tyrosine 216 (GSK3β-pY216), total GSK3α and GSK3β, and GAPDH. Bottom: Quantification of GSK3β-pS9 and GSK3β-pY216 normalized to total GSK3β, and GSK3α-pS21 and GSK3α-pY279 normalized to total GSK3α. e Top: Representative western blot of CRMP2 phosphorylation at threonine 514 (CRMP2-pT514), total CRMP2, and GAPDH. Bottom: Quantification of CRMP2-pT514 normalized to total CRMP2. Two-way ANOVA, drug effect F_(2,12) = 4.137 P = 0.05, Ank3 repression effect F_(1,12) = 3.281 P = 0.08, interaction F_(2,12) = 4.217 P = 0.02. Western blot data were averaged from three independent experiments with three biological replicates per group in each experiment. Control or C, non-targeting sgRNA; Ank3 or A, sgRNA targeting Ank3 exon 1b. The data were analyzed using two-tailed Student’s t test or ANOVA and Bonferroni post hoc tests. Data are presented as mean ± s.e.m. * P < 0.05, **P < 0.01. n.s. indicates not significant

To investigate the relationship between brain-specific Ank3 and GSK3 activity, we measured phosphorylation at key regulatory sites of GSK3β and GSK3α, serine 9 (GSK3β-pS9) and serine 21 (GSK3α-pS21), which suppress activity^51,52, and tyrosine 216 (GSK3β-pY216) and tyrosine 279 (GSK3α-pY279), which promote activity in the absence of serine 9/21 phosphorylation⁵³. While repression of brain-specific Ank3 did not affect GSK3β-pY216 or GSK3α-pY279 levels (Fig. 4d, both P > 0.05), there were significant reductions in GSK3β-pS9 and GSK3α-pS21 (Fig. 4d, both P < 0.01). These data suggest that repression of brain-specific Ank3 upregulates GSK3 activity through reduced phosphorylation of GSK3β-pS9 and GSK3α-pS21 regulatory sites.

Brain-specific Ank3 repression enhances GSK3-mediated inhibition of CRMP2 microtubule stabilization

The GSK3 substrate CRMP2 has a key regulatory role in microtubule dynamics by promoting microtubule stability through interactions with tubulin heterodimers and acting as an adapter with motor proteins^33,54. This interaction is highly regulated by GSK3-dependent phosphorylation, where phosphorylation of CRMP2 threonine 514 (CRMP2-pT514) inhibits the interaction of CRMP2 with tubulin heterodimers^33,55. We investigated the effect of brain-specific Ank3 repression on CRMP2-pT514 and whether it was modified by inhibition of GSK3 in our neuronal model system. While Ank3 exon 1b repression in neuro-2a cells resulted in no change in total CRMP2 levels compared to control cells (P > 0.05), inhibitory CRMP2-pT514 was significantly increased nearly 3-fold (Fig. 4e; post hoc vehicle-control vs vehicle-repressor P < 0.01). As expected, treatment with lithium (1 mM) or CHIR99021 (1 μM) attenuated the increase in CRMP2-pT514 induced by Ank3 exon 1b repression, such that there was no significant difference between the Ank3-repressed and control groups (Fig. 4e, post hoc lithium-control vs lithium-repressor P > 0.05, post hoc CHIR99021-control vs CHIR99021-repressor P > 0.05). These results suggest that repression of brain-specific Ank3 increases EB3 expression and soluble:polymerized tubulin ratio through GSK3-mediated inhibition of CRMP2.

Rescue of enhanced microtubule dynamics induced by Ank3 repression requires CRMP2 activity

To address whether CRMP2 activity is required for GSK3 inhibition to rescue microtubule changes induced by Ank3 repression, we evaluated whether lacosamide blocks the rescue by lithium or CHIR99021 in our neuronal model system. Lacosamide affects slow activation of sodium channels at doses of 100-500μM, but lower doses of 3–5μM inhibit CRMP2 activity and tubulin binding without affecting sodium channel activation^56–59. Pre-treatment with a low 5μM dose of lacosamide 24 h prior to 1 mM lithium or 1μM CHIR99021 treatment (Fig. 5a) blocked lithium and CHIR99021 from rescuing changes in EB3 (Fig. 5b) and steady state tubulin polymerization (Fig. 5c) induced by Ank3 exon 1b repression. Specifically, when EB3 expression was evaluated by western blot, ANOVA and post hoc analysis revealed that, in the vehicle treated groups, Ank3 repression compared to control increased EB3 expression (Fig. 5b, vehicle-vehicle control vs vehicle-vehicle repressor P < 0.01), which was rescued by treatment with lithium or CHIR99021 (Fig. 5b, vehicle-lithium control vs vehicle-lithium repressor P > 0.05, vehicle-CHIR99021 control vs vehicle-CHIR99021 repressor P > 0.05). In contrast, in the lacosamide pre-treated groups, Ank3 repression increased EB3 compared to control (Fig. 5b, lacosamide-vehicle control vs lacosamide-vehicle repressor P < 0.05), but the increase was not rescued by lithium or CHIR99021 (Fig. 5b, lacosamide-lithium control vs lacosamide-lithium repressor P < 0.05, lacosamide-CHIR99021 control vs lacosamide-CHIR99021 repressor P < 0.01). Similarly, when the ratio of soluble:polymerized tubulin was assessed, ANOVA and post hoc analysis determined that, in the vehicle treated groups, Ank3 repression increased the ratio of soluble:polymerized tubulin (Fig. 5c, vehicle-vehicle control vs vehicle-vehicle repressor P < 0.05), which was rescued by lithium or CHIR99021 (Fig. 5c, vehicle-lithium control vs vehicle-lithium repressor P > 0.05, vehicle-CHIR99021 control vs vehicle-CHIR99021 repressor P > 0.05). In contrast, in the lacosamide pre-treated groups, Ank3 repression increased the ratio of soluble:polymerized tubulin (Fig. 5c, lacosamide-vehicle control vs lacosamide-vehicle repressor P < 0.05), but the increase was not rescued by lithium or CHIR99021 (Fig. 5c, lacosamide-lithium control vs lacosamide-vehicle repressor P < 0.01, lacosamide-CHIR99021 control vs lacosamide-CHIR99021 repressor P < 0.01). Together, these data indicate that CRMP2 activity is required for GSK3 inhibition to rescue enhanced microtubule dynamics associated with repression of brain-specific Ank3.

Fig. 5. Rescue of altered EB3 expression and tubulin polymerization induced by brain-specific Ank3 repression is blocked by inhibition of CRMP2.

a Schematic representation of the experimental design. Mouse neuro-2a cells were transfected with pHAGE-EF1α-dCas9-KRAB repressor plasmid and sgRNA(MS2)_EF1α plasmid expressing either the non-targeting control sgRNA or the sgRNA targeting Ank3 exon 1b, followed by puromycin and zeocin selection. Cells were subsequently treated with 5 µM lacosamide (LCM) for 24 h, followed by treatment with lithium (1 mM) or CHIR99021 (1 µM) for 1 h, and cell harvest for protein extraction. b Top: Representative western blot of EB3 and GAPDH. Bottom: Quantification of EB3 expression normalized to GAPDH. Univariate ANOVA, LCM effect F_(1,60) = 2.00 P = 0.163, lithium/CHIR99021 effect F_(5,60) = 3.586 P = 0.03, Ank3 repression effect F_(1,60) = 21.389 P < 0.001, LCM and lithium/CHIR99021 interaction F_(2,60) = 7.505 P = 0.001. c Top: Representative western blot of α-tubulin in soluble (S) and polymerized (P) protein fractions. Bottom: Quantification of the ratio of soluble:polymerized tubulin. Univariate ANOVA, LCM effect F_(1,60) = 17.561 P < 0.001, lithium/CHIR99021 effect F_(5,60) = 0.203 P = 0.817, Ank3 repression effect F_(1,60) = 68.479 P < 0.001, LCM and lithium/CHIR99021 interaction F_(2,60) = 6.113 P = 0.004. Western blot data were averaged from two independent experiments with three biological replicates per group in each experiment. The data were analyzed using two-tailed Student’s t test or ANOVA and Bonferroni post hoc tests. Data are presented as mean ± s.e.m. *P < 0.05, **P < 0.01. n.s indicates not significant, C control sgRNA, A Ank3-targeting sgRNA

Discussion

The current study used a multifaceted approach to identify and characterize the molecular functions of brain-specific Ank3. The key finding was that brain-specific Ank3 is associated with microtubule dynamics via a GSK3/CRMP2-dependent mechanism (Fig. 6). Our transcriptome-wide RNAseq analysis of Ank3+/− mouse hippocampus identified significantly altered expression of genes involved in pathways related to microtubule regulation and function, specifically axonal guidance signaling, microtubule dynamics, vesicle fusion, cytoskeletal organization, and extension of cellular protrusions. Subsequent live-cell imaging of primary neuron axons determined that microtubule dynamics are altered (i.e. decreased EB3 comet length and duration) in Ank3+/− mice compared to Ank3+/+ mice. To examine the underlying molecular and biochemical basis, we utilized a CRISPR/dCas9-based neuronal model of brain-specific Ank3 repression that exhibited changes in microtubule characteristics (increased EB3, increased ratio of soluble:polymerized tubulin, and decreased tubulin acetylation). The microtubule changes were rescued by inhibition of GSK3 and required active CRMP2, a GSK3 substrate that functions in microtubule stabilization. Taken together, this is the first study to demonstrate that brain-specific Ank3 has a vital role in microtubule dynamics via a GSK3/CRMP2-dependent mechanism. Although it is not known whether ANK3 contributes to psychiatric illness by altering microtubule function, it is intriguing that microtubules and microtubule regulators have previously been implicated in psychiatric disorders²⁰. Notably, microtubules are shortened and microtubule organization is perturbed in neuronal precursor cells from BD and schizophrenic patients, respectively⁶⁰. It will be important to investigate the relationship between ANK3, microtubules, and psychiatric illness in future studies.

Fig. 6. Brain-specific Ank3 repression is associated with enhanced microtubule dynamics.

Left: Under normal Ank3 expression, microtubules are stabilized by binding of microtubule-associated proteins (MAPs), such as EB3 and CRMP2, to the microtubule plus end where α- and β-tubulin heterodimers polymerize to facilitate elongation of the microtubule. As microtubules elongate, EB3 and CRMP2 move along the growing plus end tip to stabilize newly generated microtubule segments. Acetylation (red diamond) accumulates on α-tubulin within the microtubule due to low microtubule turnover. Motor proteins, such as kinesin, mediate transport of cellular cargo along the microtubule towards the plus end, which is oriented towards the distal axon. Right: Repression of brain-specific Ank3 reduces phosphorylation of GSK3 (pS9/pS21) and increases GSK3 activity, leading to an increase in CRMP2 phosphorylation (pT514) and impaired CRMP2 binding and stabilization of microtubules. Microtubules become more susceptible to catastrophes, as demonstrated by increased EB3 expression, reduced EB3 comet length and duration, and increased ratio of soluble:polymerized tubulin. The increased susceptibility to catastrophes increases microtubule turnover and decreases acetylation of α-tubulin. Inhibition of GSK3 activity by lithium or CHIR99021 reduces CRMP2 phosphorylation (pT514), thereby allowing CRMP2 to bind and stabilize microtubules. Pharmacological inhibition of CRMP2 by lacosamide reduces CRMP2 binding and stabilization of microtubules, which increases the amount of free tubulin and decreases acetylation of α-tubulin. Enhanced microtubule dynamics induced by brain-specific Ank3 repression may have a range of effects (e.g. axonal transport of synaptic vesicles, microtubule interaction with motor proteins) that alter neuronal function

Live-cell imaging analyses determined that EB3 comet speed was unchanged in Ank3+/− mouse primary neuron axons, indicating that the rate of tubulin polymerization is normal. This suggests that tubulin heterodimers are able to form at microtubule plus ends when brain-specific Ank3 is reduced. However, the observed decrease in length and duration of EB3 comets in Ank3+/− mouse primary neurons suggests impaired stability of growing microtubules. This is characteristic of increased microtubule catastrophes^61,62, i.e., switching from growth to rapid shortening, whereby the plus end stabilizing cap, where EB3 binds, is lost⁶³. The shift in tubulin equilibrium to a soluble state induced by Ank3 repression, as observed in our neuronal model system, provides additional evidence for increased catastrophes, since diminished microtubule elongation would lead to accumulation of tubulin in the soluble pool rather than incorporation into growing microtubules. In support of this, treatment with taxol to stabilize microtubules has been reported to reduce the pool of soluble tubulin^41,64. Conversely, taxol-resistant cancer cells have a lower proportion of polymerized tubulin, as well as increased microtubule dynamics as indicated by increased movement of EB3 comets⁶⁴. Furthermore, additional data from our neuronal model shows diminished tubulin acetylation after Ank3 repression, suggesting that microtubules are more susceptible to rapid turnover. These studies support our findings that reduced expression of brain-specific Ank3 isoforms leads to increased activity at microtubule plus ends and instability of growing microtubules.

Among the lines of evidence implicating brain-specific Ank3 in regulation of microtubule dynamics, we found that reduction of brain-specific Ank3 in mice and our neuronal model system increased the overall expression of the EB3 microtubule end-binding protein. This is consistent with a recent report that Ank3 knockdown in mouse primary hippocampal neurons increased EB3 puncta in axons⁶⁵. However, that study reduced expression of all Ank3 isoforms by ~90%, whereas we targeted brain-specific Ank3 isoforms that are specifically implicated in psychiatric illness^1–8, and we reduced expression by only ~ 50%, which is more consistent with patient brain expression changes¹². While the precise mechanism by which EB3 expression is increased following brain-specific Ank3 repression is not known, several studies have shown that EB3 is elevated in response to enhanced microtubule dynamics^66,67, providing support that brain-specific Ank3 repression is related to enhanced dynamics.

Our data suggest that Ank3 reduction changes GSK3 and CRMP2 activity to modulate microtubule stability. Specifically, we found that repression of brain-specific Ank3 resulted in a reduction of GSK3β-pS9 and GSK3α-pS21 (i.e. increased activity), and a concomitant increase in CRMP2-pT514 (i.e. decreased activity). This is interesting given our previous study demonstrating that lithium, which inhibits GSK3 in part through increasing pS9/pS21 levels through AKT activation⁵⁰, reversed psychiatric-like behaviors in Ank3+/− mice²⁷. GSK3 has been previously implicated in psychiatric illness^68–70 however, further studies are warranted to elucidate how GSK3 activity, Ank3, and microtubules interact to regulate psychiatric-like behaviors.

The GSK3 substrate CRMP2 regulates microtubule dynamics in at least two ways: by binding to tubulin heterodimers to enhance growth at microtubule plus-ends, and by serving as an adaptor between motor proteins and microtubules to promote microtubule elongation^33,54. In both cases, phosphorylation of CRMP2 T514 by GSK3 reduces the binding affinity of CRMP2 and destabilizes microtubules. In line with the observed elevation of GSK3 activity in Ank3-repressed neuro-2a cells, CRMP2-pT514 level was increased, supporting our hypothesis that changes in microtubule dynamics are mediated through a GSK3/CRMP2 pathway. We were able to substantiate this using a low dose of the CRMP2 antagonist lacosamide to inhibit tubulin polymerization^56–59, which prevented lithium and CHIR99021 from rescuing the microtubule changes in Ank3-repressed cells. Interestingly, CRMP2 activity has previously been implicated in the lithium responsiveness of BD patients²². In that study, cells derived from lithium-responsive patients had an elevated ratio of CRMP2-pT514 to total CRMP2 (i.e., decreased activity), similar to the elevated ratio we found in Ank3-repressed neuro-2a cells. This also falls in line with our observation that CRMP2 activity is required for lithium to rescue enhanced microtubule dynamics associated with Ank3 repression.

Our findings that brain-specific Ank3 functions in microtubule dynamics advances our understanding of the role of ANK3 in supporting neuronal function, and potentially its contribution to psychiatric illness. Indeed, accumulating evidence suggests that abnormalities in the cytoskeleton are a potential mechanism for psychiatric illness via impaired microtubule-mediated axonal transport and synaptic plasticity^60,71–74. It will be important to investigate how ANK3 influences microtubule-dependent processes in neurons and whether these processes underlie the association of ANK3 with psychiatric illness.

Conflict of interest

The authors declare that they have no conflict of interest.