Clinical, Biochemical, and Molecular Features in 37 Saudi Patients with Very Long Chain Acyl CoA Dehydrogenase Deficiency

Abstract

Background: Very long chain acyl CoA dehydrogenase (VLCAD) deficiency (OMIM#201475) is an autosomal recessive disorder of fatty acid beta oxidation caused by defect in the ACADVL. The aim of this study was to analyze the clinical, biochemical, and molecular features of VLCAD deficiency in Saudi Arabia, including the treatment and outcome.

Methods: We carried out a retrospective chart review analysis of 37 VLCAD deficiency patients from two tertiary centers in Saudi Arabia, over a 14-year period (2002–2016). Twenty-three patients were managed at King Abdul-Aziz Medical City and fourteen patients at King Fahad Medical City.

Results: Severe early onset VLCAD deficiency is the most frequent phenotype in our patients, caused by four different mutations in ACADVL; 31 patients (83.7%) had a homozygous nonsense mutation in exon 2 of ACADVL c.65C>A;p. Ser22X. Twenty-three patients died before the age of 2 years, despite early detection by newborn screening and implementation of treatment, including supplementation with medium chain triglycerides.

Conclusion: This study reports the clinical, biochemical, molecular findings, treatment, and outcome of patients with VLCAD deficiency over the last 14 years. We identified the most common variant and one new variant in ACADVL. Despite early diagnosis and treatment, the outcome of VLCAD deficiency in this Saudi Arabian population remains poor. Preventive measures, such as prenatal diagnosis, could be implemented.

Background

Very long chain acyl CoA dehydrogenase deficiency (VLCAD) is an autosomal recessive disorder of fatty acid beta oxidation, caused by a defect in ACADVL gene encoding the VLCAD enzyme, which catalyzes the initial step in the mitochondrial fatty acid beta oxidation pathway (Leslie et al. 1993). This process is essential for energy production during prolonged fasting or periods of increased energy need, such as with intercurrent infection. Dietary long chain fatty acids, or those released from fat stores, are transported into the mitochondria and undergo progressive shortening by a series of chain-length specific enzymes to produce acetyl CoA and beta-hydroxybutyrate (ketones) and reducing equivalents for the mitochondrial respiratory chain, providing an alternate energy source, primarily for the brain and other critical tissues, heart, liver, and skeletal muscle (Vockley and Whiteman 2002; Spiekerkoetter 2010).

VLCAD deficiency was first described in 1985 by Hale et al., and thought to be due to long chain acyl-CoA dehydrogenase deficiency (LCAD) (Hale et al. 1985). In 1993, Aoyama et al. described VLCAD deficiency (Aoyama et al. 1993), and patients previously diagnosed as LCAD were reclassified as VLCAD deficiency. The disease has three heterogeneous clinical phenotypes: severe early onset cardiac and multi-organ failure presenting in the first months of life with dilated or hypertrophic cardiomyopathy, arrhythmia, hepatomegaly, hypoglycemia, and is often lethal; a childhood onset phenotype with hypoketotic hypoglycemia, hepatic dysfunction, and rhabdomyolysis (cardiomyopathy is unlikely); a late onset phenotype, which presents with episodic myopathy and rhabdomyolysis (Andresen et al. 1999).

The diagnosis is established initially by detecting elevations of the C14:1, C14:2, C14, or C12 acylcarnitines (McHugh et al. 2011) on newborn screening or at clinical presentation and may be confirmed by molecular analysis of ACADVL. This gene was first cloned in 1995 (Aoyama et al. 1995). Subsequently, hundreds of pathogenic mutations have been discovered. Andresen et al. reviewed potential genotype/phenotype correlation, with a general classification of the pathological mutations: null mutations with no VLCAD enzyme activity, such as truncating variants with severe presentation; missense or single amino acid deletions with residual enzyme activity and milder presentation (Andresen et al. 1999). Diekman et al. reported a strong correlation between LC-FAO flux in fibroblasts and the clinical severity of VLCAD deficiency, suggesting that this assay may have better predictive value compared to enzyme activity or plasma acylcarnitine accumulation (Diekman et al. 2015). There are likely ethnic differences in disease presentation. Most of the reported cases in Andresen et al. were European, with a mild phenotype; however, the cases initially reported by Aoyama et al. from Japan were all of the severe phenotype (Aoyama et al. 1993; Andresen et al. 1999). With the implementation of newborn screening programs, early identification of severe cases has allowed for early management and improved outcomes in some patients. Milder phenotypes may also be detected early, some of whom may remain asymptomatic, but which may reflect the true incidence of the disease (Touma et al. 2001; Spiekerkoetter 2010).

In general, treatment of VLCAD is avoidance of triggers of acute decompensation, such as prolonged fasting and intercurrent infections (catabolic stressors), early intervention for acute symptoms and dietary management, including restriction of long chain fat and supplementation with medium chain triglycerides (MCT) that can diffuse directly into the mitochondria and bypass the enzyme deficiency. Controversially, carnitine supplementation maybe used to help eliminate accumulated organic acid metabolites and prevent a secondary deficiency. Management also requires regular follow up to manage the diet, periodic monitoring of cardiac function and growth parameters (McHugh et al. 2011).

Although Saudi Arabia ranks second globally in the prevalence of genetic diseases (Christianson et al. 2006), this is the first report of clinical outcomes for VLCAD deficiency.

Methods

We carried out a retrospective chart review of 37 cases of VLCAD deficiency identified and followed at two tertiary centers in Saudi Arabia from 2002 to 2016. Twenty-three patients were from King Abdul-Aziz Medical City (KAMC) and 14 patients from King Fahad Medical City (KFMC).

Ethics approval for clinical and laboratory data collection was obtained from the King Abdullah International Medical Research Center (KAIMRC) in Riyadh, Saudi Arabia (RC16/189/R). All patients were detected early by tandem mass spectrometry newborn screening and subsequently treatment with a special metabolic formula containing MCT in addition to carnitine supplementation, with close monitoring and follow up. The diagnosis was confirmed by molecular analysis, including parental carrier testing.

ACADVL was analyzed by PCR and sequencing of coding exon and highly conserved intronic spice sites. The reference sequence of ACADVL is NM_000018.3.

Result

Clinical Features

All patients were products of consanguineous marriages. The oldest patient was 6 years old (Table 1). There were 23 female patients and 14 male patients. The female to male ratio was approximately 2:1. The family history of unexplained fetal death was positive in 31 patients (83.7%). Early onset cardiac and multi-organ failure VLCAD deficiency was detected in 27 patients (73%); the childhood hepatic and hypoglycemic form in 8 patients (21.6%); and the periodic myopathic form in 2 patients (5.5%).

Table 1.

Clinical features

Clinical features		Number of patients	Percentage
Age	0–6 months	14	37.8
	7–18 months	11	29.7
	2–6 years	12	32.4
Sex	Male	14	37.8
	Female	23	62.1
Family history	Positive	31	83.7
	Negative	6	16.2
Phenotype	Severe early onset	27	73
	Hepatic/hypoglycemic	8	21.6
	Myopathic form	2	5.4
Status of health	Deceased	23	62.1
	Alive	14	37.83
Cause of death	Arrhythmia, shock, and multiple organ failure	20	54
	Sudden early onset death	3	8.1
	Rhabdomyolysis and acute kidney injury	1	2.7
Cardiomyopathy	Hypertrophic	21	56.7
	Dilated cardiomyopathy	1	2.7
Structure heart disease	Arterial septal defect	3	8.1
	Ventricular septal defect	3	8.1
	Persistent foramen oval	4	10.8
	Bicuspid aortic valve	1	2.7
	Pulmonary stenosis	1	2.7
Hypotonia	Severe generalized	1	2.7
	Mild to moderate	5	13.5
Hepatomegaly	Predominantly seen	12	32.4
Developmental delay	Severe global developmental delay	1	2.7
	Mild-to-moderate developmental delay	7	18.9
Seizure	Tonic clonic	1	2.7
Others	Nephromegaly	1	2.7

Twenty-one patients (56.7%) were found to have a variable degree of hypertrophic cardiomyopathy and one (2%) had dilated cardiomyopathy. Eleven patients (29.7%) had structural heart disease (ventricular and atrial septal defect, pulmonary stenosis, patent ductus arteriosus, or persistent foramen oval). All patients who underwent echocardiogram had normal ejection fraction with a total average at 70.5%. Twelve patients (32.4%) developed hepatomegaly; five patients (13.5%) had hypotonia. Twenty-three (62.1%) died between the ages of 2 days and 3 years. Most deaths were preceded by frequent admissions for metabolic acidosis and rhabdomyolysis. Twenty of them died with multiple organ failure, cardiomyopathy, and arrhythmias. One patient developed acute kidney injury secondary to rhabdomyolysis and three patients (8.1%) died of sudden unexplained death in the first few days of life. Muscular hypotonia was detected in eight patients (21.6%), one of whom also had microcephaly, dysmorphic features, and seizure disorder.

Biochemical Features

All of our cases had high long chain C14 acylcarnitines. Thirty-four (91.9%) had variable elevation of liver enzymes. Five patients (13.5%) had abnormal coagulation profile and twelve patients (32.4%) had mild-to-moderate hypoalbuminemia. Hypoketotic hypoglycemia was detected in 17 patients (46%). Creatine phosphokinase (CPK) was high in 18 cases (48.6%). Recurrent metabolic acidosis was also observed. Most of the biochemical markers increased during metabolic crises.

Molecular Features

Our results showed that the mutational spectrum is narrow with four different mutations in ACADVL; 31 patients (83.7%) had a homozygous stop codon nonsense mutation in exon 2 c.65C>A; p.Ser22X (Table 2).

Table 2.

Molecular features

Number of cases	Type of mutation	Exon	Nucleic acid	Protein	Reference	Others
31 patients	Nonsense stop codon	2	c.65C>A (NM_000018.3)	p.Ser22X	Reported by Watanabe et al. (2000)
2 patients	Nonsense stop codon	3	c.134C>A (NM_000018.3)	P.Ser45X	Reported by Watanabe et al. (2000)
1 patient	Nonsense substitution	7	c.494T>C (NM_000018.3)	p.Phe165Ser	Unreported	Homozygous variant in exon 4 of ZNF423 c.3250G>A (p.Val1084lle) (NM_015069.2)
1 patient	Nonsense stop codon		c.1349G>A (NM_000018.3)	p.Arg450His	Fukao et al. (2001)

Clinical Outcome

Although all patients received standard treatment regimen mentioned above, including the MCT oil immediately following the diagnosis, the outcome was still poor, with recurrent admission for metabolic decompensation, resulting in death in 23 patients (>75% of patients) within first 2 years of life. Two sisters (28 and 18 months) are still alive with good metabolic stability and no cardiomyopathy, and found to have a pathogenic homozygous variant in exon 3 c.134 C>A; p.Ser45x.

A 3-year-old female patient with good metabolic stability was found to have c.1349G>A; p.Arg450His. A new variant in exon 7 c.494T>C; p.Phe165Ser was detected by whole exome sequencing in one 4-year-old female patient who is still alive with severe global developmental delay, generalized hypotonia, and dysmorphic features. This patient had another homozygous probably pathogenic variant in ZNF423 c.3250G>A; p.Val1084Ile. Both variants detected in this patient were also found in heterozygous state in each parent.

Two of the patients who died early had a positive newborn screen and clinical features of VLCAD deficiency and a positive family history but mutation analysis was not obtained.

Discussion

Very long chain Acyl CoA dehydrogenase deficiency is a severe life-threatening metabolic disorder of mitochondrial fatty acid beta-oxidation, which is one of the major metabolic pathways in eukaryotic energy production (Watanabe et al. 2000). The incidence of VLCAD deficiency is between 1:100,000 and 1:120,000 live births (Zytkovicz et al. 2001; Chace et al. 2002) which increased to 1:42,500 after the introduction of tandem MS for expanded newborn screening (Spiekerkoetter et al. 2003). In Saudi Arabia, however, a recent publication reported an incidence of 1:37,000, consistent with other reports of high frequency of metabolic disorders in Saudi Arabia (Alfadhel et al. 2016). The high consanguinity rate among Saudi population (Al-Gazali et al. 2006) could explain the high incidence of the disease.

It is apparent from our study and previous reports that VLCAD deficiency is a clinically heterogeneous disease that can be divided into three major phenotypes as previously described (Ogilvie et al. 1994; Andresen et al. 1999). Most of our patients presented with a severe early onset cardiac and multi-organ failure phenotype in the first few months of life, mainly in the neonatal period. Despite dietary modification and frequent monitoring, the mortality rate was 62%. The overall mortality rate of VLCAD deficiency was reported previously to reach up to 75% (Andresen et al. 1999) in clinically diagnosed patients, pre-newborn screening. The poor outcome in our study is likely related to the severe null mutations in a consanguineous population. The majority of the severe cases in our cohort were cardiomyopathic; however, there was no correlation between the degree of cardiomyopathy and the ejection fraction, and death. It is possible that arrhythmias played important role in sudden death of our patients. Arrhythmias have been previously reported in VLCAD deficiency patients. These include QT prolongation, polymorphic ventricular tachycardia, and ventricular fibrillation, sometimes without cardiomyopathy (Bonnet et al. 1999; Gelinas et al. 2011; Yamamoto et al. 2013).

A stop codon variant c.65C>A; p.Ser22X was found in 84% of our patients. This null mutation was initially described by Watanabe et al. and encodes a truncated protein leading to a complete deficiency of the VLCAD enzyme (Andresen et al. 1999; Watanabe et al. 2000).

The null mutation, reported by Touma et al., with a relatively milder cardiomyopathy phenotype, was also found in our population, but despite early diagnosis and treatment, the outcome was poor.

Interestingly, the c.134 C>A (p.Ser45X), nonsense mutation was detected in two patients with good metabolic control and no cardiomyopathy. As for the c.65C>A nonsense variant, the encoding VLCAD protein should be completely deficient. The relatively good metabolic health in the patient with the c.134C>A mutation is therefore probably explained by other genetic or environmental factors. The other previously reported mutation, c.1349G>A p.Arg450His, was detected in a 3-year-old patient. It was previously reported in a 14-year-old Japanese girl (Fukao et al. 2001) as a compound heterozygote, with residual activity and a milder phenotype, similar to our patient.

In this study we also report a new variant, which was identified by WES, the variant, c.494T>C (p.Phe165Ser) in exon 7 of ACADVL, affect a highly conserved amino acid, and introduce a large physiochemical deference. Indeed, in silico analysis predicted that this variant was pathogenic. Another variant in exon 4 of the ZNF423 c.3250G>A; p.Val1084Ile (associated with Joubert syndrome type 19 [OMIM # 614884]) was detected and could explain the unexpected phenotypes in this particular patient.

We did not detect any patient in this study with the variant c.848T>C; p.V283A, reported in the literature as the most frequent mutation in VLCAD deficient patients (Miller et al. 2015; Evans et al. 2016). This variant is often associated with residual enzyme activity and mild hepatopathic (hypoglycemia may occur) or episodic myopathic adult form of VLCAD deficiency that responds well to standard treatment (Andresen et al. 1999; Touma et al. 2001; Miller et al. 2015). The new variant detected in this study broadens the genetic spectrum of VLCAD deficiency; however, the detection of another homozygous variant in ZNF423 may indicate presence of another genetic disease in this patient which is not uncommon in our society. Al-Owain et al. discussed the concept of “Double hit” and reported many examples of patients with two or more concurrent genetic diseases as in our patient population, which was attributed to the high rate of consanguinity in Saudi society (Al-Owain et al. 2012).

The presence of a common null mutation in our patients and the poor outcome despite early diagnosis and treatment suggests that preventive measures may be an option. In our centers, in addition to thorough genetic counseling for affected families, we offer prenatal diagnosis for future pregnancies. With education and the philosophy that the “current patient is the last patient in the family,” most of the families accept the offered preventive measures.

Conclusion

In our retrospective study of 37 VLCAD deficiency patients over a 14-year period, the clinical outcomes and genotypes in our patients are different to that reported in the Caucasian population, with majority of cases having a severe early onset cardiac and multi-organ failure phenotype. Homozygosity for the c.65C>A nonsense mutation is the common with 83.7% of cases. Despite the early detection by newborn screening and early implementation of standard treatment, the outcome is fatal in most patients in the first 2 years of life. The prevention of this disease in our population may require pre-implantation genetic diagnosis, prenatal genetic testing, and carrier testing of high risk family members in addition to premarital genetic carrier testing for the known family mutation.

Learning Point

Truncating null mutations was the most common genotype in our VLCAD deficiency patients, with poor outcome despite early diagnosis and proper management. Prenatal diagnosis be a preferable strategy for managing this disorder in our population.

Details of the Contributions of Individual Authors

AO: performed the majority of work associated with preparing, writing, and submitting the manuscript and contributed to the clinical diagnosis and management of the patient. MN: performed work associated with preparing, writing, and intellectual discussion. MF, AAS, and FM: contributed to the diagnosis and management of the patient at KAMC and edited the manuscript. AAA, EF, and AM: contributed to the clinical diagnosis and management of the patient at KFMC and edited the manuscript. DM: Study design, manuscript writing, and final revision. MAB and MAA: Data collection and manuscript revision. WE: contributed to the clinical diagnosis and management of the patient and performed the work related to study design, conceptual discussion, and manuscript writing and revision. All authors read and approved the final manuscript.

Guarantor Author

Wafaa Eyaid.

Compliance with Ethics Guidelines

Conflict of Interest

Abdulrahman Obaid, Marwan Nashabat, Majid Alfadhel, Ali Alasmari, Fuad Al Mutairi, Abdulrahman Alswaid, Eissa Faqeih, Aziza Mushiba, Deborah Marsden, Marwah Albanyan, Maryam Alalwan, and Wafaa Eyaid declare that they have no conflict of interest.

Informed Consent

All procedures followed were in accordance with the ethical standards of the responsible committee on human experimentation (institutional and national) and with the Helsinki Declaration of 1975, as revised in 2000 (5). Informed consent was obtained from all parents and available upon request.

Details of Ethics Approval

This study was approved by King Abdullah International Medical Research Center IRB (RC16/189/R).

Details of Funding

This study received no specific funding from any financial support agency either public or commercial and not-for-profit sectors.