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. Author manuscript; available in PMC: 2018 Sep 18.
Published in final edited form as: Biochemistry. 2018 Jul 13;57(30):4478–4495. doi: 10.1021/acs.biochem.8b00546

Table 2. Kinetic parameters of MmCobD and truncated MmCobD1-385 for ATP.

SeCobD, MmCobD, MmCobD1-385, and MmCobD386-497 enzymes were assayed for ATPase activity. using a NADH consumption assay (see Materials and Methods). Enzymes were purified and assayed oxically or anoxically as indicated. These parameters are apparent kinetic values of the mean ± standard deviation of triplicate independent experiments. For steady-state analysis, the L-Thr concentration was saturating at 10 mM and ATP was gradually increased. ND, not detected.

A. Cooperativity
ATPa,b,c
Protein Assay
condition
R2 Vmax
(μM s−1)
K0.5
(mM)
kcat
(s−1)
kcat/K0.5
(M−1 s−1)
h
MmCobD1−385 oxic 0.97 0.06 ± 0.003 72 ± 5 0.02 ± 0.001 0.27 ± 0.24 3 ± 0.4
MmCobD oxic 0.91 0.08 ± 0.004 48 ± 2 0.03 ± 0.001 0.54 ± 0.53 5 ± 1.0
SeCobD anoxic - ND ND ND - -
B.Michaelis-Menten
ATP
Protein Assay
condition
R2 Vmax
(μM s−1)
Km
(mM)
kcat
(s−1)
kcat/Km
(M−1 s−1)
MmCobD anoxic 0.97 0.08 ± 0.002 0.05 ± 0.006 0.04 ± 0.0001 720 ±150
MmCobD386−497 anoxic - ND ND ND -
a

These parameters are apparent kinetic values of averages of triplicate independent experiments and standard deviations.

b

For steady-state analysis, the L-Thr concentration was saturating at 10 mM

c

ND, not detected