Skip to main content
Proceedings of the Royal Society B: Biological Sciences logoLink to Proceedings of the Royal Society B: Biological Sciences
. 2018 Oct 10;285(1888):20182048. doi: 10.1098/rspb.2018.2048

Correction to ‘Dodging silver bullets: good CRISPR gene-drive design is critical for eradicating exotic vertebrates’

Thomas A A Prowse, Phillip Cassey, Joshua V Ross, Chandran Pfitzner, Talia Wittmann, Paul Thomas
PMCID: PMC6191687  PMID: 30305441

Proc. R. Soc. B 284, 20170799. (Published Online 9 August 2017). (doi:10.1098/rspb.2017.0799)

We recently found an error in our calculation of the probability of a wild-type allele moving from s to j susceptible sites (Inline graphic), and acquiring the gene drive (Inline graphic), during gene-drive homing, under the assumption that multiplexed gRNAs are expressed simultaneously. In the R code provided (function GeneDriveSimRec, appendix S1), these probabilities are calculated recursively and the multiplier Inline graphic was missing (from line 11), where j is the number of cut target sites along an inter-site NHEJ-mediated deletion at which NHEJ did not occur. We have assessed the impact of this omission on our results, and it is negligible for the baseline of Inline graphic used in our study. However, the impact of this error increases as Inline graphic increases. Therefore, we have redone the sensitivity analysis in which we tested Inline graphic ranging up to 0.1. The amended figure 6 below is essentially identical to the original figure, with the exception that probabilities of eradication are slightly lower for Inline graphic close to 0.1 in panel (c) of the corrected version.

Figure 6 (corrected).

Figure 6 (corrected).

The impact of the probability of non-homologous end-joining (PN) and existing polymorphic resistance (PR) on the probability of successful mouse eradication (Perad) under the homozygotic XX sterility gene-drive strategy. The results shown assume an island carrying capacity of 50 000 mice, 100 gene-drive carriers used for inoculation, simultaneous gRNA expression and (a–c) 2, 3 or 4 guide RNAs. The plotted probabilities are derived from a binomial spatial spline fitted to the sensitivity-analysis output separately for each panel.

This same error invalidates the expression provided in the paper for the probability of successful homing (Inline graphic) for a wild-type allele with s susceptible sites, assuming multiplexed gRNAs are expressed simultaneously. The original expression published was:

graphic file with name rspb20182048-e1.jpg

We correct this here to:

graphic file with name rspb20182048-e2.jpg

where

graphic file with name rspb20182048-e3.jpg

The figure above illustrates that this correction has little impact on the probability of successful homing (Inline graphic) for the baseline of Inline graphic used in our study (panel (a)), but also that the impact of this error increases as Inline graphic increases (panel (b)).

graphic file with name rspb20182048-g2.jpg

For completeness, we also provide here a corrected version of figure S3 from the electronic supplementary material. Note that in this figure, the maximum number of susceptible sites exceeds that which is tested by modelling in the paper (which was limited to a maximum of five cutting sites targeted by five gRNAs).

Figure S3 (corrected).

Figure S3 (corrected).

The probability of successful homing (Psg) as a function of the number of susceptible DNA recognition sites, and assuming either sequential or simultaneous expression of guide RNAs. Analytical results are shown for different probabilities of non-homologous end-joining (PN): (a) PN = 0.01, (b) PN = 0.03 and (c) PN = 0.05.


Articles from Proceedings of the Royal Society B: Biological Sciences are provided here courtesy of The Royal Society

RESOURCES