Altered Treg and cytokine responses in RSV-infected infants

Abstract

Background:

Respiratory syncytial virus (RSV) is the leading cause of bronchiolitis and pneumonia in children under one year of age in the United States. The host immune response is believed to contribute to RSV-induced disease. We hypothesize that severe RSV infection in infants is mediated by insufficient regulation of the host immune response of regulatory T cells (Tregs) resulting in immunopathology.

Methods:

Blood and nasal aspirates from 23 RSV-infected and 17 control infants under 1 year of age were collected. Treg frequencies were determined by flow cytometry from peripheral blood mononuclear cells. Analysis of 24 cytokines was measured by multiplex assay on nasal aspirates.

Results:

We demonstrate that the frequency of activated Tregs is significantly reduced in the peripheral blood of RSV-infected infants compared to age-matched controls. Surprisingly, Th17 related cytokines including IL-1β, IL-17A, and IL-23 were associated with a reduction in clinical symptoms of respiratory distress. In addition, the amount of IL-33 protein in nasal washes, a cytokine important in maintaining Treg homeostasis in mucosal tissues, was decreased in RSV-infected children.

Conclusion:

These results suggest that decreased Treg numbers and an inability to properly control the host inflammatory response results in severe RSV infection.

Introduction

Respiratory syncytial virus (RSV) is the leading cause of lower respiratory tract infections in young children worldwide (1). The majority of children become infected with RSV during the first year of life, with almost all children exposed to RSV by the age of two (2). Each year an estimated 33.8 million annual RSV infections occur resulting in 3–4 million hospitalizations and 66,000–199,000 deaths worldwide in children under 5 years of age (1). While a number of risk factors have been identified that are associated with the chance of severe RSV infection, the majority of RSV hospitalizations occur in previously healthy children (3). Currently, the only approved RSV-specific therapy is prophylactic treatment with palivizumab (4, 5). However, preventative treatment with palivizumab is restricted to high-risk infants and therefore there is currently no approved method to prevent severe RSV-induced disease in otherwise healthy children (6). The development of an RSV vaccine is needed to reduce the global disease burden and mortality observed from RSV infection. Thus, an increased understanding of the host immune response to severe RSV infection in infants would help facilitate the development of an effective vaccine and/or therapeutic intervention.

The host immune response is thought to contribute to the severity of RSV-induced disease in both humans (7) and animal models (8, 9). Conflicting reports exist as to the specific role of the T cell response in RSV-induced disease. Both CD4 and CD8 T cells have been detected in the airways of RSV-infected infants (7, 10, 11). However, T cells are present at a much lower frequency than other inflammatory cells such as neutrophils and monocytes (7, 10). Notably, many CD4 T-cell-specific cytokines have been detected and implicated in human RSV-induced disease (12–14). In mice, RSV-induced disease has been shown to be mediated by an improper skewing of CD4 T cell subsets (9, 15, 16). T helper (Th) 1 polarized CD4 T cells that produce IFN-γ and TNF-α contribute to the clearance of viral infections, however, RSV infection often induces both Th2 and Th17 responses (16–18). Thus, regulation and induction of a proper immune response is vital to the prevention of RSV-induced disease (19). Regulatory T cells (Tregs) have been shown to play a critical role in preventing disease in RSV-infected mice (20–23). Tregs have been shown to prevent lung inflammation and immune-mediated pathology in RSV-infected mice (20–22). However, the role of Tregs during RSV infection in humans is currently unclear.

In this study we observe a reduction in the frequency of activated Tregs (aTregs) in the peripheral blood of RSV-infected infants compared to controls. We also find that resting Treg (rTreg) frequencies decrease as RSV disease progresses. To understand the relationship between Treg expression and respiratory cytokine levels we also measured a panel of cytokines in the nasal secretions of each infant. We found that RSV-infected infants display an increased level of a wide range of pro-inflammatory cytokines. Importantly, we observed a reduction in IL-33, a cytokine required for Treg maintenance within mucosal tissues. Taken together our results demonstrate a reduction in Treg frequencies and an increase in inflammatory cytokines in the lung in RSV-infected infants indicating that a failure to properly regulate the host immune response may contribute to the severity of RSV-induced disease.

Results

Characteristics of the study population.

In this study, 40 infants presenting with respiratory infection were enrolled. PCR and cultures of respiratory secretions determined that 25 (62.5%) of the infants were infected with RSV. Two of the RSV-infected infants exhibited co-infections, one with adenovirus and the other with influenza. The remaining infants were infected with human metapneumovirus (10%), adenovirus (7.5%), parainfluenza virus (5%), influenza (2.5%) or bacteria (12.5%). As expected (24, 25), RSV was the most prevalent pathogen detected in infants hospitalized with respiratory infections.

Control samples were collected from infants admitted to the hospital for elective surgery with no report of respiratory illness. Sex, age at sample collection, and gestational age were not found to be significantly different between the controls and RSV-infected infants (Table 1 and data not shown). Patient history showed no difference between the controls and RSV-infected infants with regard to a family history of asthma, second hand exposure to tobacco smoke, previous respiratory infections, infants with siblings or household pets (Table 1 and data not shown). In addition, a small number of RSV-infected infants in the study were premature (gestation less than 37 weeks; n = 4). We found that gestational age may have altered the response to two cytokines measured (Supplemental Table S1). Furthermore, a small portion of infants from both controls and the RSV-infected infants were administered palivizimab prior to hospitalization but no difference was observed between the control and RSV-infected infants (Table 1). Overall, no significant difference in the characteristics of the study populations was observed.

Table 1.

Demographic and treatment data of study population.

	Control (n = 17)	RSV (n = 23)
Male/Female	9/8	14/9
Agea (range)	1.7 (0.1 - 8.7)	3.3 (0.4 - 10.1)
Gestational agea (range)	37.3 (30 - 39)	36.8 (28 - 39)
Family history of asthma	13.3%	21.7%
Household smokers	13.3%	21.7%
Prev. respiratory infection	6.7%	13%
Siblings	66.6%	85.7%
Household pets	37.5%	13%
Palivizumab	6.3%	8.7%
Oxygen received	NA	21 (91%)
Use of CPAP	NA	8 (35%)
Use of heliox	NA	0 (0%)
Mechanical ventilation	NA	5 (22%)
Steroids	NA	3 (13%)
Albuterol	NA	8 (35%)

^aAverage in months

Infants received supportive care based on their severity of illness (Table 1). However, no intervention was associated with a significant change in either the frequency of T cell populations or cytokine concentrations (data not shown).

Activated Tregs are reduced in RSV-infected infants.

Human regulatory T cells can be divided into two distinct subsets. Resting Tregs (rTreg) are defined by high expression of CD45RA and intermediate expression of either Foxp3 or CD25. Activated Tregs (aTreg) are defined by low expression of CD45RA and high expression of either Foxp3 or CD25 as previously reported (26). Using a similar gating strategy (Figure 1A, Supplemental Figure S1), the frequency of rTregs in the peripheral blood did not exhibit a significant difference between RSV-infected infants and controls (Figure 1B). However, we observed a reduced frequency of aTregs in the peripheral blood of RSV-infected infants compared to age-matched controls (Figure 1C). Furthermore, the frequencies of conventional naïve and memory CD4 T cell populations were not altered in RSV-infected infants (Figure 1D and1E). The frequency of proliferating CD4 T cells, as measured by Ki-67 expression, did not significantly differ between RSV-infected infants and controls (Figure 1F). Thus, while aTreg frequencies were reduced in RSV-infected infants, the proportion of proliferating aTregs was similar. Overall, RSV-infected infants displayed a reduced frequency of aTregs in the peripheral blood, with no perturbation observed in any other CD4 T cell subset examined.

Figure 1. aTreg frequencies are reduced in the peripheral blood of RSV-infected infants.

PBMCs from RSV-infected infants and controls were stained to identify subsets of conventional and regulatory CD4 T cells. (A) Representative plots depict CD45RA^hiFoxp3^int/CD25^int resting Tregs (rTreg, I), CD45RA^loFoxp3^hi/CD25^hi activated Tregs (aTreg, II), CD45RA^hiFoxp3^- naïve conventional CD4 T cells (III), and CD45RA^loFoxp3^- memory conventional CD4 T cells (IV) from control and RSV-infected infants. The cumulative frequencies of resting (B) and activated (C) Tregs are shown for controls and RSV-infected infants by two staining methods. (D) Naïve and (E) memory conventional CD4 T cell frequencies are shown from all groups. (F) Ki-67 expression from each CD4 T cell subset defined by CD45RA and Foxp3 expression is shown for both control (white bars) and RSV-infected infants (black bars). All samples are gated on CD4⁺CD3⁺ T cells. Data represents the mean ± SEM for both controls (n = 13) and RSV (n = 17) groups. **, p < 0.01.

Cytokine concentrations increase in RSV-infected infants.

To understand the relationship between Treg expression and respiratory cytokine levels we also measured a panel of 24 cytokines and chemokines. Of those cytokines analyzed, eight were observed at significantly greater levels in nasal excretions of RSV-infected infants compared to controls (Table 2). The Th1-associated cytokines IFN-γ and TNF-α were significantly increased in RSV-infected infants (Table 2). The Th2-associated cytokine IL-4 was also significantly increased in RSV-infected infants, however, the Th2-associated cytokine IL-5 was undetectable and IL-13 showed no significant difference between groups (Table 2). Furthermore, the pro-inflammatory and pyrogenic cytokines IL-1α and IL-6 were also increased in RSV-infected infants. IL-1β exhibited the greatest increase in RSV-infected infants indicating inflammasome activation (Table 2). Only IL-33, a danger signal induced in response to tissue damage (27), was significantly reduced in RSV-infected infants (p = 0.0561, Table 2). Six cytokines and chemokines, including IL-5, IL-9, IL-17F, IL-17E, Eotaxin, and TSLP were undetectable in both RSV-infected infants and controls. Together, our data demonstrates an increase in Th1, Th2 and pro-inflammatory cytokines while IL-33 is decreased in RSV-infected infants compared to controls.

Table 2.

Cytokines and chemokines in nasopharyngeal aspirates (pg/ml).

	Control (n = 17)				RSV (n = 23)				LOD	P	Sig
	Avg	Median	75thQ	25thQ	Avg	Median	75thQ	25thQ
IL-1α	12.06	3.65	10.26	3.65	38.76	15.6	31.60	5.52	3.65	0.0509	†
IL-1β	5.65	2.38	7.42	0.63	66.85	18.62	103.55	2.41	0.63	0.0073	**
IL-4	4.30	3.87	3.87	3.87	7.13	3.87	5.26	3.87	3.87	0.0317	*
IL-6	33.26	3.64	15.60	3.08	66.94	37.63	74.05	18.43	0.45	0.0694	†
IL-7	2.44	2.38	2.86	1.63	3.04	2.97	4.10	2.43	0.51	0.6553
IL-10	3.55	0.87	4.63	0.54	6.67	4.01	8.64	1.47	0.54	0.1603
IL-12p40	4.94	3.69	3.69	3.69	7.38	4.15	6.67	3.69	3.69	0.1300
IL-12p70	0.84	0.62	0.86	0.62	1.08	0.62	0.92	0.62	0.62	0.4336
IL-13	2.40	2.32	3.13	1.83	3.08	3.155	4.41	1.82	0.57	0.4330
IL-15	0.81	0.61	0.61	0.61	1.70	0.98	2.04	0.61	0.61	0.2768
IL-17A	0.75	0.64	0.64	0.64	0.95	0.64	0.91	0.64	0.64	0.7413
IL-21	50.91	25.11	49.23	17.98	73.32	43.58	121.15	18.84	5.11	0.5283
IL-23	0.55	0.36	0.51	0.36	0.60	0.39	0.69	0.36	0.36	0.0012	**
IL-33	20.69	8.735	20.82	5.00	13.87	12.18	18.03	5.97	4.83	0.0561	†
TNF-α	4.21	0.65	2.23	0.65	17.41	7.98	33.88	1.86	0.65	0.0858	†
IFN-γ	0.67	0.59	0.59	0.59	2.85	0.59	1.23	0.59	0.59	0.0002	‡
MDC	26.94	27.33	35.86	15.60	29.52	24.42	40.94	18.82	15.6	0.6737
RANTES	19.88	3.85	3.85	3.85	56.08	23.51	70.41	12.42	3.85	0.0001	‡

Avg = Average

Q = Quartile

LOD = Limit of detection

P = p-value as determined by two-tailed t-test

Sig = Significance;

^†≤ 0.1,

^*≤ 0.05,

^**≤ 0.01, and

^ಠ0.001

Resting Treg frequencies decrease as RSV symptoms progress.

Upon TCR activation, rTregs upregulate Foxp3 expression and convert to aTregs (26). Thus, if Tregs are activated following RSV infection, we would expect to observe a decrease in rTregs and an increase in aTregs as RSV infection progressed. Therefore, we examined the change in the rTreg and aTreg population over the course of an acute respiratory infection in infants. A significant decline in the rTreg frequency was observed in the blood of RSV-infected infants as the days post-symptom onset increased (Figure 2). Thus, rTreg prevalence in the blood decreased as RSV disease progressed. However, we did not see an overall reduction in rTregs potentially because many of the samples were collected at an early time point following the initial onset of symptoms. In addition, we did not observe a subsequent increase in aTregs. This suggests that while the decline in rTregs may be due to conversion to aTregs, the aTregs were either migrating from the blood or undergoing apoptosis during RSV infection.

Figure 2. rTreg frequencies decrease as RSV disease progresses.

The coefficients of determination between CD45RA^hiFoxp3^int rTregs (A, R² = 0.3569) or CD45RA^loFoxp3^hi aTregs (B, R² = 0.0089) and onset of symptoms in RSV-infected infants were calculated along with the p-values measuring significance of association (A, p = 0.0113; B, p = 0.7187).

Th17-associated cytokines are associated with reduced respiratory signs and symptoms.

The impact of IL-17 on disease severity following RSV infection has been controversial. Two previous studies have found infants with moderate RSV infection expressed more IL-17 than those with severe infection (28, 29). However, IL-17 was found to be pathogenic in the murine model of RSV resulting in enhanced mucus production and neutrophilic infiltrate (18). Here we found that Th17-associated cytokines IL-1β, IL-17A and IL-23 were all elevated when either difficulty breathing or retraction was not reported by the infant’s doctor following examination (Figure 3). These results were found following extensive analysis to determine associations between multiple disease parameters and cytokine levels (Supplemental Table S2). No association was observed for either the Th1-associated cytokine TNF-α or the Th2-associated cytokine IL-13 when either difficulty breathing or retraction was reported in the RSV-infected infants (Figure 3, Supplemental Table S2). Moreover, no cytokines were associated with any medical treatment that the children received (data not shown). Thus, Th17-associated cytokines may not be mediators of lung disease during infant RSV infection.

Figure 3. Th17-associated cytokines correlate with reduced difficulty breathing and retraction.

Physical exam findings of difficulty breathing (left) and retraction (right) are associated with Th17-associated but not Th1- or Th2-associated cytokine concentrations in nasal excretions from RSV-infected infants. Data represent the mean ± SEM for both controls (n = 13) and RSV (n = 17) groups. *, p < 0.05. **, p < 0.01.

Discussion

Respiratory syncytial virus infection has been shown to alter the inflammatory milieu of infected infants (13, 16), however, regulation of this inflammatory response has not been well studied. Here we examined both the cytokine milieu and the expression of regulatory and conventional CD4 T cells in infants hospitalized with RSV infection compared to uninfected controls. We found that RSV infection in infants induces a significant reduction in aTregs but not rTregs compared to controls. These findings are similar to a recent study performed by Raiden et al. in Argentina (30). However, Raiden et al also observed a reduction in all Foxp3 expressing CD4 T cells irrespective of subset (30). The differences in responsiveness of the rTreg and activated CD4 T cell subsets observed between the studies may be due to differences in circulating RSV strains or in the timing of sample collection after infection. However, in agreement with our results, Raiden et al also observed a reduction in the frequency of aTregs in the blood that may be the result of aTreg migration from the blood to the site of the infection in the lung. Alternatively, aTreg numbers may be reduced in all peripheral tissues following RSV infection. We also observe that rTreg frequencies in the peripheral blood are reduced as RSV disease progresses. rTregs are believed to represent a long-lived Treg population that upon activation proliferate and convert to aTregs (26). Thus, a reduction in rTregs should result in an increase in aTregs, however, we did not observe this in our cohort of RSV-infected infants. Consequently, RSV infection appears to drive Treg activation whereupon Tregs either leave the blood to enter the lung or undergo apoptosis. Further understanding the fate of Tregs is vital to understanding the regulation of the RSV immune response in infants. This reduction of Tregs in the blood is not observed in the murine model of RSV (20). In mice, Treg frequencies show a slight increase in the blood and are greatly expanded in the lung following RSV infection (20). Tregs have been shown to be vital in limiting the lung immunopathology observed in mice following RSV infection by regulating T cell recruitment, activation and cytokine production (20–22, 31). It appears that Tregs do not follow a similar distribution pattern in RSV-infected infants and thus may not be present in the lung in sufficient numbers to properly regulate the host immune response.

To understand the correlation between Treg subset distribution and respiratory cytokine levels we also measured a panel of cytokines in the same RSV-infected infants and controls. We found that RSV-infected infants exhibited an increase in both Th1- and Th2-associated cytokines, though both are expressed at very low levels. A previous study with nasal samples from over 800 RSV-infected children under 5 years of age also observed an increase in the Th1-associated cytokine TNF-α but did not observe any detectable levels of Th2 cytokines (14), however, their assay may have had a higher limit of detection. Nevertheless, it is difficult to determine if the low levels of the Th1- and Th2-associated cytokines we observed are sufficient to impact RSV disease severity. Furthermore, Tregs are known to control both Th1- and Th2-associated cytokine responses in mice, however, no correlation was observed between the level of these cytokines and the frequency of either aTregs or rTregs within each individual (data not shown).

While the majority of cytokines measured were increased following RSV infection, IL-33 was found to be reduced in RSV-infected infants compared to controls. This is in contrast to recent studies in which IL-33 was observed to increase in mice and human infants following RSV infection (32–34). However, human RSV strain differences and severity of disease may explain the observed differences in IL-33 levels in infants. The RSV infected infants in our study exhibited severe RSV infection requiring hospitalization and intensive care whereas the infants enrolled in the study by Saravia et al only required clinical presentation of RSV symptoms (32), thus increased disease severity may result in reduced IL-33 levels. IL-33 is believed to play an important role in RSV infection through its role as an alarmin that serves as a warning of tissue damage to the host (35–38), and thus may play an important role in activating the immune response. Furthermore, IL-33 has been shown to be necessary for Treg accumulation and maintenance in the mucosal site of the intestines (39). IL-33 may play a similar role for Treg recruitment and maintenance in other mucosal sites such as the lung. Importantly, our observed reduction in IL-33 levels could explain the reduction in the frequency of aTregs observed in the RSV-infected infants. Furthermore, the reduction in IL-33 from basal levels may indicate apoptotic rather than necrotic death of endothelial cells which has been shown to reduce IL-33 levels (40). The observed reduction in IL-33 may play an important role in explaining the severity of disease observed in these RSV-infected infants. However, our observations were made in two separate compartments, with IL-33 in the nasal washes and Tregs in the blood. Further, studies of Tregs in human airways will help to determine the connection between IL-33 and Tregs during RSV infection.

While Th17-associated cytokines were not found to change between RSV-infected infants and controls, observed symptoms within the RSV-infected infants was associated with the presence of Th17-associated cytokines. Each of the RSV-infected infants presented with one or more respiratory symptoms including wheezing, retraction, congestion, and difficulty breathing. Extensive analysis of presented disease parameters identified a reduction in Th17-associated cytokines but not Th1- or Th2-ssociated cytokines when difficulty breathing and retraction were observed. Two previous studies reported similar findings where infants with moderate RSV infection expressed more IL-17 than those with severe infection (28, 41). However, IL-17 was found to be pathogenic in the murine model of RSV resulting in enhanced mucus production and neutrophilic infiltrate (18). While they found that IL-17 mediated enhanced disease, they also observed enhanced viral clearance in RSV-infected mice (18). IL-17 appears to be induced by RSV infection in both mice and humans, however, IL-17 appears to play a protective role by an unknown mechanism in human RSV infection.

Our results indicate that aTregs decrease in the peripheral blood following severe RSV infection in infants. This reduced regulation is associated with increased Th1-, Th2-, and inflammasome-associated cytokines. These results together with a reduction in the alarmin cytokine IL-33 indicate a lack of regulation resulting in an unbalanced immune response following RSV infection in infants. Understanding how the virus modulates the host inflammatory response can help to determine what immune targets are beneficial in treatment and prevention of RSV-infection in infants.

Methods

Study population.

The study population was comprised of infants under 1 year of age hospitalized at the University of Iowa Hospitals and Clinics between January 2013 and June 2014 that presented with suspected viral respiratory illness. Viral infection was confirmed by PCR of nasopharyngeal secretions. Infants less than 1 year of age admitted to the hospital without respiratory symptoms were included as controls. All samples were obtained within 48 hours of hospital admission. Demographic information and family history were obtained from the parents. Physical examination and treatment information was obtained from medical records and the primary medical team. Children were excluded if they had a history of immunodeficiency, congenital cardiac disease, hemodynamic instability, deemed at risk of death, or lacked parental consent. The study was approved by the University of Iowa Human Subjects Office (IRB-01 201202786) and written consent was obtained from all of the patients’ guardians.

Nasal fluid cytokine determination.

Nasal washes and tracheal aspirates were treated with an equal volume of 0.1% TritonX PBS, 1ul/ml protease inhibitor cocktail (P8340; Sigma-Aldrich, St. Louis, MO) and frozen at −80°C. Cytokine concentrations were measured using a multiplex assay per the manufacturer’s instructions (EMD Millipore, Billerica, MA).

Peripheral blood mononuclear cell (PBMC) Isolation.

PBMCs were isolated from 2 ml of blood collected in 4ml Na Heparin green top tubes (BD, Franklin Lakes, NJ). PBMCs were isolated using Ficoll-Paque Plus (GE Healthcare Life Sciences, Pittsburgh, PA). Cells were resuspended at 2 × 10⁶ cells/ml in 10% DMSO FCS and frozen at −80°C followed by long-term storage in liquid nitrogen.

Flow Cytometry.

PBMCs were thawed and stained with anti-CD25 (PE, BC96) and anti-CD45RA (eFlour450, HI100) extracellularly. Cells were fixed using Foxp3 Fixation Buffer and stained in permeabilization buffer with antibodies specific to CD3 (Biotin, OKT3; Qdot 605, Invitrogen), CD4 (Percp-efluor710, SK3), Foxp3 (PE-Cy7, 236A/E7; all antibodies were obtained from eBioscience, San Diego, CA) and Ki-67 (FITC, B65; BD Bioscience, San Jose, CA). Samples were run on a BD LSR Fortessa (BD Biosciences) and the data was analyzed using FlowJo software (Tree Star Inc, Ashland, OR).

Statistical analysis.

Statistical analyses were performed using GraphPad Prism software (La Jolla, CA) to compare T cell frequencies between control and RSV patients. Groups were compared using the Mann-Whitney test for unpaired samples. Additional statistical analyses were performed using SAS (SAS Institute Inc, Cary, NC). Pearson correlations were calculated to determine associations between T cell populations, cytokine concentrations and patient data (disease level, days post-symptoms, and age). A linear modeling framework was used to determine associations between predictors (patient survey information an physical exam results) and outcomes (T cell populations and cytokine concentration).