Abstract
Purpose
To identify and characterize the sources of B0 field changes due to head motion to reduce motion sensitivity in human brain MRI.
Methods
B0 fields were measured in five healthy human volunteers at various head poses. After measurement of the total field (TF), the field originating from the subject (SF) was calculated by subtracting the external field (EF) generated by the magnet and shims. A subject-specific susceptibility model was created to quantify the contribution of the head and torso. The spatial complexity of the field changes was analyzed using spherical harmonic expansion.
Results
Minor head pose changes can cause substantial and spatially complex field changes in the brain. For rotations and translations of about 5° and 5 mm respectively at 7 T, the SF component alone generates a resonance frequency shift over the brain with a standard deviation of about 10 Hz. The stationary torso contributes to the SF significantly with a standard deviation of about 5 Hz. These SF change leads to image-corrupting phase errors in multi-shot T2*-weighted acquisitions.
Conclusion
The B0 field changes arising from head motion are problematic for multi-shot T2*-weighted imaging. Characterization of the underlying sources provides new insights into mitigation strategies, which may benefit from individualized predictive field models in addition to real-time field monitoring and correction strategies.
Keywords: MRI, B0, head motion, susceptibility
INTRODUCTION
Subject motion is a common source of artifacts in brain MRI. Typical anatomical MRI acquisitions last for several minutes during which the data for image reconstruction is collected. Any head motion during this period can corrupt the data and affect image quality. Often, and especially during scanning of patients and children, motion related artifacts in the form of blurring and ghosting are severe enough to affect clinical diagnosis (1).
Over the years, a variety of methods have been developed to mitigate motion artifacts (2,3). These have optimized the MRI acquisition process to reduce motion sensitivity or corrected for motion during image reconstruction. For example, fast acquisition schemes such as single-shot methods (4–7), can be utilized to “freeze” motion or to limit the amount of motion during the image acquisition time. This however limits the flexibility of manipulating image contrast, optimizing the signal-to-noise ratio (SNR) in the images, as well as the maximum attainable spatial resolution.
Alternatively, the incorrect spatial encoding of the object due to motion during the scan can be corrected using estimates of the motion parameters. These can be measured in real time with an external measurement device, such as an optical camera (8,9) or magnetic field probes together with off-resonance frequency markers (10), or from MR signal itself in the form of so called “navigators” (11–16). The estimated motion can then be used to dynamically adjust the slice location and orientation of an ongoing scan (prospective motion correction) (17) or correct the motion artifacts at the reconstruction stage (retrospective motion correction) (16,18,19). In some of these methods (14,15), beyond the spatial correction scheme, effect of motion-induced changes of the MRI main magnetic field (B0) was partially corrected based on the measured navigators and will be mentioned in more details later in this section.
While these methods often decrease the sensitivity of brain MRI to motion, they may be inadequate under specific circumstances. For example, brain MRI based on magnetic susceptibility contrast requires a long echo time (TE) and generally cannot be performed with single-shot methods, making such methods particularly sensitive to motion artifacts, even with the application of correction schemes. This sensitivity is attributed in part to the complex effects of motion on the B0 field, which typically are not or inadequately considered in motion correction approaches. This is particularly problematic at high magnetic field strength, where susceptibility contrast is increased and has promising applications for the study of brain structure and function (20,21). In fact, to achieve consistent high image quality for these applications, motion appears to be a major impediment.
The complexity of the relationship between head pose (i.e. position and orientation) and the B0 field results from an interplay of several effects. As the head moves, there are two main sources of B0 field inhomogeneity that contribute to the total field (TF) changes in the brain. The first is the external field (EF), which is the combined field from the main magnet and the B0 shim coils of the MRI system. A second contribution comes from the subject’s inhomogeneous magnetization (the subject’s field or SF), which consists of a (mostly) static component due to the magnetization of the immobile torso and a dynamic one from the head and neck. At the start of an MRI exam, typically the B0 shim fields are adjusted to homogenize the TF in the head. With motion, however, the head will experience a changed SF due to the reorientation of the magnetization of the head in the main field direction, and a change due to a changed position in the inhomogeneous EF and the SF from the torso. Note that although the EF component can be determined on a scanner-specific basis, the subject-specific SF remains unknown. A third, temporally varying contribution comes from the respiratory motion of the chest. The latter may introduce spatially varying changes with a peak-to-peak amplitude of about 3 Hz at 7 T with a strong dependency on location in the inferior-superior (z) direction (22). Real-time shimming may counteract this field fluctuation using the chest displacement data as input (23). In the current study, this respiration-related field fluctuation was corrected for during image reconstruction and not further investigated.
Changes in B0 alter phase and frequency of the MRI signal, which can lead to geometric distortions, image intensity dropouts, and ghosting artifacts. These effects can be minimized by acquiring all image data very rapidly relative to the time scale of head motion, as is done in single-shot MRI. While these techniques remain sensitive to the (static) B0 distribution across the head, correction is possible retrospectively by, for example, estimating this distribution from the image phase (24). For multi-shot techniques, however, additional dynamic field estimation and correction methods are required to correct the B0 errors across the phase encoding steps. For low-order spatial variations of B0, these may include three one-dimensional projections (14,25) or volumetric navigators (26,27) combined with adjustment of the shims in real time. However, the effectiveness of these approaches depends on the spatial complexity of the motion-induced field changes in the brain and the extent to which they can be accurately measured and compensated for with the available shim hardware, which may not be straightforward. In this regard, measurement of the field outside the head with e.g. field probes is theoretically not sufficient to estimate the field inside the head, as was recently confirmed in a study that combined measurement data from sixteen field probes placed around the head (28). The alternative approach of navigators can be demanding in scan time for mapping complex field changes. Furthermore, even if such information were available, the real-time field shimming capability of standard clinical scanners is generally insufficient to compensate for the dynamic changes that may have second- or higher-order spatial dependencies. In previous studies (17,29,30), the spatial pattern and magnitude of the TF changes were reported in several subjects, but the contributions to the TF from different magnetization components and the complexity of its spatial pattern were not quantified. Based on these earlier findings, we hypothesized that the spatial complexity of the head motion-induced B0 change is beyond the measuring capacity of the conventional navigators that can be easily inserted into MRI sequences, and the magnitude of this change is significant enough to cause severe image artifacts in T2*-weighted MRI or at high field. In order to ultimately correct its impact, it is important to develop a better understanding of the magnitude, complexity and contribution from the various sources, including the EF and the SF of the head and torso. To address this, we performed MR-based measurements of the B0 field at various head poses and numerical simulation based on a subject-specific model of the susceptibility distribution of the head and torso.
METHODS
Human experiments
Anatomical images and B0 field map data were acquired from five healthy human subjects under a human subject research protocol approved by the Institutional Review Board at the National Institutes of Health. Head scans were obtained at 7 T (scanner: Magnetom, Siemens, Erlangen, Germany). One subject was also scanned at 3 T (scanner: Magnetom Prisma, Siemens, Erlangen, Germany). This scanner was equipped with a transmit-receive body radiofrequency (RF) coil which could be used to image the neck and torso for modeling of their effect on the SF in the head. For head scans at 3 T, a 32-channel receive head coil (Nova Medical, Wilmington, MA, USA) was used. At 7 T, either a 32-channel receive head coil (Nova Medical, Wilmington, MA, USA) or a home-built birdcage transmit-receive head coil (31) was used.
During the experiments, the subjects were instructed to move their head to various poses and remain still during the following scan period when the B0 field was measured. After an initial scan (“reference”), head poses employed were, “right”, “left”, “up” and “down”. The same B0 shim parameters were used across different head poses. The field map data at each pose were acquired with a 2D gradient-echo (GRE) sequence with five echoes spaced by 1.2 ms and a 2 mm isotropic resolution. In this sequence, a first-order navigator echo along the read-out direction was acquired for each shot (i.e. RF excitation) to allow for correction of the dynamic frequency changes due to scanner instability or respiration. The field maps were calculated based on the unwrapped phase difference between echoes (32). The frequency data acquired in different poses were detrended based on the average frequency in a 3×3×3 voxel3 region at the center of the brain to reduce the field drift effect of the scanner. Note that this is an approximation of the field drift from the scanner since the pose change is likely to cause a global field shift. The head poses were determined based on an inter-pose, rigid-body co-registration of the GRE magnitude images. This procedure returned the 6-parameter rotation and translation information.
To generate the susceptibility model, anatomical data were acquired from the subject in the 3 T experiment using a proton density-weighted 2D GRE sequence (TE=3.4 ms, TR= 500 ms, flip angle=35°) covering a range of 50 cm from the top of the head to the chest. This was done in three stages with table positions at head, neck and chest and isotropic resolutions of 2, 4 and 4 mm, respectively. The combined image was interpolated to 2 mm resolution for generating a susceptibility model of the subject.
Estimation of the EF
To estimate the EF, which originates from the MRI system, field maps were also acquired on a spherical oil phantom with a diameter of 164 mm. Choice of this phantom was based on the theoretical notion that a sphere of uniform magnetic susceptibility does not change the resonance frequency within it. After each scan session on a human subject, this phantom was placed in a position that closely matched that of the head. A different B0 shim configuration was utilized in the phantom experiment to optimize the B0 homogeneity and the data quality. The measured field maps in the phantom were fitted to polynomials up to the third order to compensate for the location mismatch between the phantom and the head. In addition, shim calibration was performed by acquiring field maps at various magnetic field shim settings using the spherical phantom. Based on these data, the EF was calculated as the sum of the measured field in the phantom and the difference of the shim fields, essentially the field from the magnet and the shim coils. The calculated EF was subtracted from the measured TF of each subject to obtain the SF.
Simulation of B0 field
To further elucidate the mechanisms of the effects of head pose on the SF (and thus the TF) in the brain, a model-based field simulation was performed. A susceptibility model was constructed based on the proton density-weighted GRE image of the subject in the 3 T experiment. The GRE image was manually segmented into air cavities, lung and other tissues, the former including sinuses, ear canals, nasal cavity, esophagus and air way and the latter including bone and soft tissues, in reference to visual descriptions of the gross anatomy of human head and torso (33,34). The susceptibility value of air (0.36 ppm) was assigned to the background and air cavities in the model, and that of water (−9 ppm) to bone and soft tissues. Lung was assigned a mixed value with an air-to-water ratio of 8:2 (35). The value of ear canals and upper nasal cavity were assigned empirical air-to-water ratios of 5:5 and 7:3, respectively, to account for the ear plugs and circuitous nasal air path. Field simulation was performed using a custom program implementing the Fourier-based method as described in (36). Simulated field distributions for various head poses were calculated by changing the head pose of the model using the six motion parameters from the experimental data. The simulated field in various poses was then transformed to the reference pose.
Quantification of the magnitude and complexity of the B0 field changes
The B0 maps were filtered to reduce the Gibbs ringing artifact, using a 3D Gaussian filter of which the standard deviation was 0.6 voxels and the kernel size was 5 voxels. Analysis about the B0 field changes was performed in a region of interest (ROI) covering the cerebrum and part of the cerebellum and midbrain for each subject. The ROI was obtained using manual segmentation of the GRE images used for B0 mapping. The edge of the brain was excluded in the analysis by shrinking the ROI by two voxels—half of the Gaussian filter kernel width—to avoid partial volume effects near the brain-skull interface. An example of the ROIs is shown in Sup. Fig. S1 in the Supporting Information.
The standard deviations (SD) of the SF and TF were analyzed within the ROIs to measure the magnitude of the motion-induced field changes. Because the field drift of the scanner cannot be completely separated from the motion-induced global field changes, the mean value of the field changes was only analyzed in the simulation data. B0 field data from a phantom experiment showed that the scanner field drift was mostly spatially uniform.
The spatial complexity of the B0 field changes was evaluated based on the residual of the spherical harmonic expansion. The expansion of the field changes was performed in the laboratory frame and the head frame, respectively, i.e., the field data was re-aligned by co-registration in the latter case.
Evaluating the SF effect
In order to estimate the significance of the pose-dependent SF on image quality, simulations were performed based on a T2*-weighted GRE dataset with a TE of 25 ms, acquired with a single, constant head pose. For a selected slice, n consecutive k-space lines were modified based on the measured SF from a different head pose, starting at varying k-space location p. This simulated the field effects of moving from the reference pose to the new pose at k-space line p and returning to the reference pose at line p+n. The artifact level in the resultant “field-corrupted” image was then evaluated using the normalized root-mean-square error (NRMSE) of its magnitude relative to the uncorrupted image magnitude. Note that this particular simulation isolates the effects of field changes with pose changes and avoids confounding effects from gradient encoding errors resulting from pose changes. The latter may be correctable with dedicated strategies based on estimation of the motion parameters. It also isolates the change of the EF in the head frame which can be determined on a scanner-specific basis as shown earlier and further corrected with estimated motion parameters.
The impact of the phase error on the image resolution was further analyzed based on the fractional energy of the side lobes (FESL) of the point spread function (PSF) when n k-space lines (TE=25 ms) were modified with a spatially constant frequency offset Δf. Note that the location of the n lines does not change the magnitude of the PSF based on the Fourier Shift Theorem. FESL is defined as , with j being the spatial index of the discrete PSF relative to the central position. Based on the Convolution Theorem, FESL can be derived as
(1) |
where r is the ratio between the numbers of the corrupted lines and the total phase-encoded lines.
RESULTS
An example of the effects of head pose on the SF and TF in the brain is shown in Fig. 1, where B0 field maps from different poses (a–d) were aligned with that of the reference pose, i.e., in the head frame. The ROI used for analyzing the data of this subject is shown in Sup. Fig. S1 in the Supporting Information. The corresponding motion parameters are listed in Table 1. Even for small pose changes (a few degrees rotation and a few mms translation), robust and highly inhomogeneous field shifts are observed that reach levels of +/− 10 Hz for both SF and TF. The spatial patterns are complicated and, as would be expected, show opposing directions of field shift with respect to the directions of pose change (i.e. “left” versus “right” and “up” versus “down”). Histograms showing the distribution of the SF change in the brain of the same subject are shown in Fig. 2, indicating that observed frequency shifts range from −10 to 10 Hz. The SDs of both SF and TF changes are summarized, with the pose parameters, in Table 1.
TABLE 1.
Rotation*/° | Translation/mm | SD/Hz | ||||||
---|---|---|---|---|---|---|---|---|
| ||||||||
x** | y | z | x | y | z | SF | TF | |
Right | −0.7 | −1.3 | −7.2 | 6.6 | −1.4 | −0.3 | 5.0 | 8.3 |
Left | 1.7 | −0.6 | 8.7 | −5.0 | 0.5 | −1.2 | 7.8 | 10.8 |
Up | −5.2 | −0.8 | 2.1 | −0.5 | −2.6 | −4.2 | 7.9 | 12.7 |
Down | 4.9 | −1.5 | 3.0 | 1.2 | 0.6 | 0.6 | 8.6 | 16.6 |
: The center of the rotation is on the center of the FOV.
: The positive directions of x, y and z axes are towards the left, posterior and head direction of the subject, respectively.
The complexity of the spatial patterns of the field changes was first analyzed in the laboratory frame (i.e. prior to registering the field maps to the reference) based on fitting with spherical harmonics. As shown in Fig. 3a, the root-mean-square error (RMSE) of the residual field decays only slowly as a function of the maximum order of the harmonics. Even with high-order expansions up to 15, RMSE of the residual field is still around 5 Hz, well above the noise threshold derived from the noise scan data (37). In contrast, in the head frame as shown in Fig. 3b, the TF and SF changes have fewer high-order components and their residuals merge with each other after the second order expansion. This can be explained by the fact that the field changes due to the change of head pose in the inhomogeneous EF are mostly composed of low-order spatial components while the higher-order changes mainly originate from the moved susceptibility distribution of the subject. By tracking the SF curves alone, it can be noticed that in the “Right” and “Left” poses, the residuals reached the flat part of the curves earlier than the “Up” and “Down” poses, suggesting predominantly low-order SF changes in the former two cases, which are mostly from the low-order inhomogeneous field of the torso. As suggested by the residual curves and the maps (inserts), it still needs shims beyond the commonly available second order to counteract the field changes in the head frame.
The motion-induced changes in the SF during MRI image acquisition are strong enough to cause substantial image artifacts. To illustrate this, we simulated the effect using T2*-weighted GRE data acquired at 7 T with TE=25 ms, based on the observed SF change in the central slice shown in Fig. 1. As expected, the worst-case scenario should occur when pose changes happen during acquisition of the central lines in the k-space. To illustrate this, we replaced two central lines (p=-2 and n=2) of the k-space data with “field-corrupted” data (Fig. 4). The NMRSE values of the corrupted images are 9.7%, 12.9%, 16.7% and 16.0% for “Right”, “Left”, “Up”, and “Down” head poses, respectively. The NMRSE values resulting from replacing n consecutive k-space lines starting from k-space location p are shown in Fig. 4c. The largest NMRSEs occur when the pose transition (one of the two borders of the group of n-lines) occurs at the center of the k-space, resulting in two peaks at each y-axis location. Although smaller NRMSE values are observed when the outer k-space lines are corrupted, the phase error may still cause strong deterioration on the detailed structure in the image. To evaluate this, in Fig. 4d, the calculated FESL of the PSF based on Eq. 1 as a function of the frequency change Δf (TE=25 ms) and the fraction r of the corrupted lines suggests that even a small Δf such as 10 Hz can relocate significant energy to a pixel from the other pixels. As expected, this effect is the most significant when the k-space lines are divided into two halves of different frequency states and the resultant phase difference is 180º.
Results of the simulations investigating the contributions to the SF changes as a function of head poses are shown in Fig. 6 based on the extracted susceptibility model as shown in Fig. 5. The measured and simulated SF changes in the head frame of reference were converted to the corresponding frequency at 7 T. It can be seen that the simulated SF changes based on the full model (head and torso) closely matched the experimentally observed changes. Reassuringly, field patterns for different poses in this subject were similar to those in subject 1 (Fig. 1). This was also the case for the SD values of the measured and simulated field changes (Table 3, compare with Table 2). Importantly, Figure 5 also shows that the contributions from both the head and the torso are significant in explaining the observed field changes with pose changes. Field calculation using the head-only model resulted in noticeable differences from both the experimental data and the head-torso model, indicated by the yellow arrows in Fig. 6. This difference, which is equivalent to the field change originating from the susceptibility of the torso, is shown in the bottom row of Fig. 6 for “right”, “left” and “up” poses. Corresponding torso-originated field changes in the brain were 0.2±4.1, −0.4±5.0 and −1.8±5.8 Hz, respectively, which are substantial portions of the total SF changes reported in Table 3. Note that these SD values are comparable to the SD values when head rotation is predominantly around the z-axis as shown in Table 2. It can be understood that when the head only rotates around the z-axis, the main source driving the SF change is the non-uniform field from the stationary torso. To confirm the adverse consequence of neglecting the torso in the model, the distribution of prediction error against measurement data is illustrated in Fig. 7, showing broadened error distributions in all three poses based on the head-only model.
TABLE 3.
Rotation/° | Translation/mm | SD of Measurement/Hz (7T) | Mean±SD of Simulation/Hz (7T) | |||||
---|---|---|---|---|---|---|---|---|
| ||||||||
x | y | z | x | y | z | |||
Right | −0.6 | −2.1 | −10.6 | 3.5 | −1.0 | 0.0 | 11.1 | 0.4±8.2 |
Left | −2.5 | 3.7 | 7.3 | −3.0 | −0.2 | −1.5 | 14.1 | 4.5±12.3 |
Up | −7.3 | 1.1 | 0.5 | −1.0 | −1.2 | 4.0 | 17.9 | 12.0±17.3 |
TABLE 2.
Subject | Motion | SD/Hz | |||
---|---|---|---|---|---|
| |||||
Maximum displacement/mm | Rotation/° (x, y and z) | Translation/mm (x, y and z) | SF | TF | |
#2 | 12.0 | −4.4, 1.2, 3.0 | −0.9, −0.9, 4.7 | 8.7 | 15.8 |
15.1 | 1.0, 1.3, 7.8 | −1.4, −0.1, 2.4 | 5.2 | 8.2 | |
| |||||
#3 | 11.8 | 6.3, 2.7, 0.0 | −1.3, 1.4, −0.5 | 12.0 | 21.1 |
14.5 | −7.4, 2.8, −2.5 | −0.8, −2.7, −0.6 | 14.2 | 18.9 | |
22.9 | −0.2, 5.4, 9.9 | −4.4, −1.5, −1.7 | 10.3 | 15.4 | |
| |||||
#4 | 12.2 | −2.8, −0.9, 4.4 | −2.3, −0.3, 5.2 | 8.3 | 15.5 |
15.4 | −5.1, −0.8,2.7 | −1.5, −0.1, 5.3 | 12.5 | 21.4 | |
| |||||
#5 | 12.6 | −5.0, −1.1, −3.8 | −0.2, −2.4, −2.4 | 13.6 | 14.3 |
11.9 | −6.2, −0.2, 0.6 | 0.2, −2.7, −0.9 | 14.3 | 15.7 | |
9.9 | −2.1, −0.3, 3.8 | 1.3, −0.5, 1.0 | 6.0 | 8.4 |
DISCUSSION
Head motion-induced changes in the TF during susceptibility-weighted MRI can form a major source of image artifacts. Two distinct sources contribute to the TF changes in the head: a change in the head pose in the inhomogeneous external field from the MRI magnet and its shims, and a change in the SF originating from the susceptibility of the subject. The latter can originate from, in the reference frame of the head, a static component from the torso (ignoring respiratory motion of the chest), and a dynamic motion-related component from head and neck. Quantification of these contributions in five healthy human volunteers showed that inhomogeneity of the external background field and the magnetization of the human subject both contribute significantly to the TF change following head motion. Although the amplitude of field changes is relatively minor compared to the background inhomogeneity and therefore less likely to cause severe additional distortion in either the read-out direction or the phase-encoding direction of EPI data, we have shown that it is significant enough to cause significant phase-encoding errors in multi-shot MRI, during which head motion tends to occur, especially when the TE is long. The metric FESL was proposed to quantify the energy displacement over pixels due to the phase error happening across the phase encoding steps. The field changes were also found to be spatially complex, making them difficult to correct with conventional phase correction schemes based on navigator echoes.
Several previous studies have reported on the magnitude of the B0 field changes caused by head motion based on either measurement or simulation (17,29,30,38,28). The values were either similar, or substantially higher than the values found here. For example, in (17), the maximum field change was reported to be 160 Hz at 3 T at the front of the brain, albeit with a much larger (12.5º pitch rotation, i.e., rotation around the left-right axis) pose change than used here. In (29), the maximum field change was in excess of 50 Hz at 3 T with a 5º pitch rotation. In another experimental study using a 2 mm resolution at 7 T (30), with rotations less than 10º, the field changes in several representative ROIs were in the range of 10–20 Hz, close to the SD value of the TF changes (Table 1 and 2) in the current study. In another study performed under similar conditions (38), reported field changes were substantially higher and in the range of 20–40 Hz with a higher resolution of 1 mm. Lastly, a simulation study (28) showed that the average absolute shifts of the SF were in the 10–20 Hz range at 7 T when the head model was rotated by about 5º, again similar to the SD value of the SF changes reported here (Table 1, 2 and 3). In summary, while there is a significant variation in the reported field changes associated with head motion, these studies confirm the notion that the effects are substantial.
While it is possible to estimate the EF from a calibration scan (e.g. by using a spherical phantom), correcting for the SF is more challenging as it depends on the subject-specific susceptibility distribution in both head and torso, and their relative orientation and position. The shim field in the EF is partially optimized to reduce the inhomogeneity of the SF in the original pose. Therefore, it is necessary to understand the contributions from both the head and torso to obtain a full picture of the B0 effect. As shown in the tables, the motion-induced SF change is a substantial portion of the TF change, which is furthermore dependent on the type of motion. For example, in the cases when the pitch rotation dominates, the SD of the SF is 12.4 Hz compared to 7.7 Hz for the case when the yaw rotation around the z-axis dominates. This is in agreement with the expectation that SF in the brain is most severely affected by air-tissue interfaces in the head and their change in orientation relative to the main field direction. Nevertheless, as shown in Fig. 6, the torso contributes considerably to SF, with a SD around 5 Hz at 7 T. These field variations are larger than the commonly seen respiration-related field fluctuation (~ 3 Hz at 7 T) as mentioned above. Based on the result shown in Fig. 4d, with a 5 Hz field offset, up to 15% of the total energy of the T2*-weighted signal (TE=25 ms) in a voxel can be generated from its neighbors.
The spatial complexity of the motion induced changes in the TF (Fig. 3) makes real-time monitoring challenging For example, the use of external field probes (39) to detect these changes is inadequate, as fields external to the head provide insufficient information to reconstruct those inside the head. Likewise, navigators-based correction (27) needs to be sophisticated enough to provide sufficient spatial information for field correction, especially for 3D imaging. While previous studies have shown the feasibility of using navigators to compensate for simple spatial patterns of field change (14,26,27), proper correction of the high-order pattern of the TF changes will require a sophisticated navigator at the cost of significant additional scan time. Design of such navigators with time-efficient encoding schemes will be important to develop a practical solution for T2*-weighted MRI in the presence of motion.
A potential alternative to navigator-based field correction may be to establish a predictive model incorporating the relationship between the SF and head motion parameters. Regression analysis of the acquired and simulated field data suggests a highly linear relationship between the two in regions other than the vicinity of air-tissue interfaces. This model could be constructed for each individual using pre-measured field data acquired from different head poses. It may not be practical to establish a generalized model across subjects due to the multitude of factors contributing to this issue. Even within the same subject, SF patterns may vary across different sessions because of their initial head-torso posture or physiological condition (e.g. absence or presence of sinus congestion). An alternative way is based on a subject-specific model of susceptibility. In fact, this approach has been proposed to correct the EPI distortion of a moving phantom (40). For human subjects, anatomical scans revealing the air cavities against bone and soft tissue may support this predictive model, e.g., scans based on ultrashort or zero echo-time designs (41–43). The influence of the neck and torso can potentially be modeled using simplified geometry with appropriate susceptibility values (41). Future work is needed to validate the feasibility of such an approach.
Because of the spatial complexity of the field change, prospective field correction is not practical with the state-of-the-art spherical harmonic (SH) shim systems due to either the limited order of the shim systems or the slow response of the nonlinear shim coils. Recently, high-order shim systems with multiple local non-spherical-harmonic (NSH) coils have been proposed to improve the homogeneity of the main field in the human brain dynamically (44,45). Based on the result in Fig. 3, although it is not feasible to completely eliminate the B0 field inhomogeneity in the brain (Fig. 3a), it might be possible to dynamically counteract the motion-induced B0 field changes in the head frame (Fig. 3b) using the NSH shim coils and the head pose information as an input while the shim coils are kept static in space. The previous studies (44,45) suggest that the NSH coils can compensate the B0 field inhomogeneity to about the fifth order. Alternatively, the field effect can be corrected retrospectively in the image reconstruction integrating the estimated and/or measured information of the field change. As mentioned earlier, this information can potentially be obtained by field measurement, predictive models or a combination of both.
In summary, changes of head pose can cause significant changes of B0 in the brain with a high-order spatial complexity and contributions from multiple factors, including inhomogeneities in the field of the MRI magnet and shims, and field effects from both head and torso. Quantitative analysis shows that all these factors need to be considered in the design of correction approaches, which will likely need to include sophisticated navigators and field probe systems or predictive field modeling.
Supplementary Material
Acknowledgments
This work was supported by the Intramural Research Program of the National Institute of Neurological Disorders and Stroke.
References
- 1.Andre JB, Bresnahan BW, Mossa-Basha M, Hoff MN, Smith CP, Anzai Y, Cohen WA. Toward Quantifying the Prevalence, Severity, and Cost Associated With Patient Motion During Clinical MR Examinations. J Am Coll Radiol. 2015;12:689–695. doi: 10.1016/j.jacr.2015.03.007. [DOI] [PubMed] [Google Scholar]
- 2.Hedley M, Yan H. Motion artifact suppression: A review of post-processing techniques. Magn Reson Imaging. 1992;10:627–635. doi: 10.1016/0730-725X(92)90014-Q. [DOI] [PubMed] [Google Scholar]
- 3.Zaitsev M, Maclaren J, Herbst M. Motion Artefacts in MRI: a Complex Problem with Many Partial Solutions. J Magn Reson Imaging JMRI. 2015;42:887–901. doi: 10.1002/jmri.24850. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 4.Hennig J, Nauerth A, Friedburg H. RARE imaging: A fast imaging method for clinical MR. Magn Reson Med. 1986;3:823–833. doi: 10.1002/mrm.1910030602. [DOI] [PubMed] [Google Scholar]
- 5.Liu G, Van Gelderen P, Duyn J, Moonen CTW. Single-shot diffusion MRI of human brain on a conventional clinical instrument. Magn Reson Med. 1996;35:671–677. doi: 10.1002/mrm.1910350508. [DOI] [PubMed] [Google Scholar]
- 6.Poustchi-Amin M, Mirowitz SA, Brown JJ, McKinstry RC, Li T. Principles and Applications of Echo-planar Imaging: A Review for the General Radiologist. RadioGraphics. 2001;21:767–779. doi: 10.1148/radiographics.21.3.g01ma23767. [DOI] [PubMed] [Google Scholar]
- 7.Günther M, Oshio K, Feinberg DA. Single-shot 3D imaging techniques improve arterial spin labeling perfusion measurements. Magn Reson Med. 2005;54:491–498. doi: 10.1002/mrm.20580. [DOI] [PubMed] [Google Scholar]
- 8.Zaitsev M, Dold C, Sakas G, Hennig J, Speck O. Magnetic resonance imaging of freely moving objects: prospective real-time motion correction using an external optical motion tracking system. NeuroImage. 2006;31:1038–1050. doi: 10.1016/j.neuroimage.2006.01.039. [DOI] [PubMed] [Google Scholar]
- 9.Qin L, van Gelderen P, Derbyshire JA, Jin F, Lee J, de Zwart JA, Tao Y, Duyn JH. Prospective head-movement correction for high-resolution MRI using an in-bore optical tracking system. Magn Reson Med. 2009;62:924–934. doi: 10.1002/mrm.22076. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 10.Haeberlin M, Kasper L, Barmet C, Brunner DO, Dietrich BE, Gross S, Wilm BJ, Kozerke S, Pruessmann KP. Real-time motion correction using gradient tones and head-mounted NMR field probes. Magn Reson Med. 2015;74:647–660. doi: 10.1002/mrm.25432. [DOI] [PubMed] [Google Scholar]
- 11.Ordidge RJ, Helpern JA, Qing ZX, Knight RA, Nagesh V. Correction of motional artifacts in diffusion-weighted MR images using navigator echoes. Magn Reson Imaging. 1994;12:455–460. doi: 10.1016/0730-725X(94)92539-9. [DOI] [PubMed] [Google Scholar]
- 12.Fu ZW, Wang Y, Grimm RC, Rossman PJ, Felmlee JP, Riederer SJ, Ehman RL. Orbital navigator echoes for motion measurements in magnetic resonance imaging. Magn Reson Med. 1995;34:746–753. doi: 10.1002/mrm.1910340514. [DOI] [PubMed] [Google Scholar]
- 13.Thesen S, Heid O, Mueller E, Schad LR. Prospective acquisition correction for head motion with image-based tracking for real-time fMRI. Magn Reson Med. 2000;44:457–465. doi: 10.1002/1522-2594(200009)44:3<457::aid-mrm17>3.0.co;2-r. [DOI] [PubMed] [Google Scholar]
- 14.van der Kouwe AJW, Benner T, Dale AM. Real-time rigid body motion correction and shimming using cloverleaf navigators. Magn Reson Med. 2006;56:1019–1032. doi: 10.1002/mrm.21038. [DOI] [PubMed] [Google Scholar]
- 15.Hess AT, Andronesi OC, Tisdall MD, Sorensen AG, van der Kouwe AJW, Meintjes EM. Real-time motion and B0 correction for localized adiabatic selective refocusing (LASER) MRSI using echo planar imaging volumetric navigators. NMR Biomed. 2012;25:347–358. doi: 10.1002/nbm.1756. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 16.Gallichan D, Marques JP, Gruetter R. Retrospective correction of involuntary microscopic head movement using highly accelerated fat image navigators (3D FatNavs) at 7T. Magn Reson Med. 2016;75:1030–1039. doi: 10.1002/mrm.25670. [DOI] [PubMed] [Google Scholar]
- 17.Maclaren J, Herbst M, Speck O, Zaitsev M. Prospective motion correction in brain imaging: A review. Magn Reson Med. 2013;69:621–636. doi: 10.1002/mrm.24314. [DOI] [PubMed] [Google Scholar]
- 18.Batchelor PG, Atkinson D, Irarrazaval P, Hill DLG, Hajnal J, Larkman D. Matrix description of general motion correction applied to multishot images. Magn Reson Med. 2005;54:1273–1280. doi: 10.1002/mrm.20656. [DOI] [PubMed] [Google Scholar]
- 19.Cordero-Grande L, Hughes EJ, Hutter J, Price AN, Hajnal JV. Three-dimensional motion corrected sensitivity encoding reconstruction for multi-shot multi-slice MRI: Application to neonatal brain imaging. Magn Reson Med. 2017 doi: 10.1002/mrm.26796. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 20.Duyn JH, van Gelderen P, Li T-Q, de Zwart JA, Koretsky AP, Fukunaga M. High-field MRI of brain cortical substructure based on signal phase. Proc Natl Acad Sci U S A. 2007;104:11796–11801. doi: 10.1073/pnas.0610821104. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 21.Ugurbil K. Magnetic resonance imaging at ultrahigh fields. IEEE Trans Biomed Eng. 2014;61:1364–1379. doi: 10.1109/TBME.2014.2313619. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 22.Van de Moortele P-F, Pfeuffer J, Glover GH, Ugurbil K, Hu X. Respiration-induced B0 fluctuations and their spatial distribution in the human brain at 7 Tesla. Magn Reson Med. 2002;47:888–895. doi: 10.1002/mrm.10145. [DOI] [PubMed] [Google Scholar]
- 23.van Gelderen P, de Zwart Ja, Starewicz P, Hinks Rs, Duyn Jh. Real-time shimming to compensate for respiration-induced B0 fluctuations. Magn Reson Med. 2007;57:362–368. doi: 10.1002/mrm.21136. [DOI] [PubMed] [Google Scholar]
- 24.Ooi MB, Muraskin J, Zou X, Thomas WJ, Krueger S, Aksoy M, Bammer R, Brown TR. Combined prospective and retrospective correction to reduce motion-induced image misalignment and geometric distortions in EPI. Magn Reson Med. 2013;69:803–811. doi: 10.1002/mrm.24285. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 25.Ward HA, Riederer SJ, Jack CR. Real-time autoshimming for echo planar timecourse imaging. Magn Reson Med. 2002;48:771–780. doi: 10.1002/mrm.10259. [DOI] [PubMed] [Google Scholar]
- 26.Hess AT, Tisdall MD, Andronesi OC, Meintjes EM, van der Kouwe AJW. Real-time motion and B0 corrected single voxel spectroscopy using volumetric navigators. Magn Reson Med. 2011;66:314–323. doi: 10.1002/mrm.22805. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27.Alhamud A, Taylor PA, van der Kouwe AJW, Meintjes EM. Real-time measurement and correction of both B0 changes and subject motion in diffusion tensor imaging using a double volumetric navigated (DvNav) sequence. NeuroImage. 2016;126:60–71. doi: 10.1016/j.neuroimage.2015.11.022. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 28.Wezel J, Webb A, van Osch M. Effect of head motion on B0 shimming based on magnetic field probes. Proceedings of the 25th Annual Meeting of ISMRM; Honolulu, HI, USA. 2017; p. 3933. [Google Scholar]
- 29.Jezzard P, Clare S. Sources of distortion in functional MRI data. Hum Brain Mapp. 1999;8:80–85. doi: 10.1002/(SICI)1097-0193(1999)8:2/3<80::AID-HBM2>3.0.CO;2-C. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30.Sulikowska A, Wharton S, Glover P, Gowland P. Will field shifts due to head rotation compromise motion correction?. Proceedings of the 22nd Annual Meeting of ISMRM; Milan, Italy. 2014; p. 885. [Google Scholar]
- 31.Murphy-Boesch J. A Distributed Impedance Model for the Shielded 7T Inductive Head Coil. Proceedings of the 18th Annual Meeting of ISMRM; Honolulu, HI, USA. 2010; p. 3817. [Google Scholar]
- 32.Abdul-Rahman H, Gdeisat M, Burton D, Lalor M. Fast three-dimensional phase-unwrapping algorithm based on sorting by reliability following a non-continuous path. International Society for Optics and Photonics. 2005;5856:32–41. doi: 10.1117/12.611415. [DOI] [Google Scholar]
- 33.Netter FH. Nervous System, Part 1: Anatomy and Physiology. Summit, NJ: Ciba-Geigy Corporation; 1991. [Google Scholar]
- 34.Duvernoy HM. The Human Brain: Surface, Three-Dimensional Sectional Anatomy with MRI, and Blood Supply. Wien; New York: Springer; 1999. 2nd, completely rev. and enlarged ed. [Google Scholar]
- 35.Fleming J, Conway J, Majoral C, Bennett M, Caillibotte G, Montesantos S, Katz I. Determination of regional lung air volume distribution at mid-tidal breathing from computed tomography: a retrospective study of normal variability and reproducibility. BMC Med Imaging. 2014;14:25. doi: 10.1186/1471-2342-14-25. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 36.Marques Jp, Bowtell R. Application of a Fourier-based method for rapid calculation of field inhomogeneity due to spatial variation of magnetic susceptibility. Concepts Magn Reson Part B Magn Reson Eng. 2005;25B:65–78. doi: 10.1002/cmr.b.20034. [DOI] [Google Scholar]
- 37.Pruessmann KP, Weiger M, Scheidegger MB, Boesiger P. SENSE: sensitivity encoding for fast MRI. Magn Reson Med. 1999;42:952–962. [PubMed] [Google Scholar]
- 38.Yarach U, Luengviriya C, Stucht D, Godenschweger F, Schulze P, Speck O. Correction of B0-induced geometric distortion variations in prospective motion correction for 7T MRI. Magn Reson Mater Phys Biol Med. 2016;29:319–332. doi: 10.1007/s10334-015-0515-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 39.De Zanche N, Barmet C, Nordmeyer-Massner JA, Pruessmann KP. NMR probes for measuring magnetic fields and field dynamics in MR systems. Magn Reson Med. 2008;60:176–186. doi: 10.1002/mrm.21624. [DOI] [PubMed] [Google Scholar]
- 40.Boegle R, Maclaren J, Zaitsev M. Combining prospective motion correction and distortion correction for EPI: towards a comprehensive correction of motion and susceptibility-induced artifacts. Magma N Y N. 2010;23:263–273. doi: 10.1007/s10334-010-0225-8. [DOI] [PubMed] [Google Scholar]
- 41.Sostheim R, Maclaren J, Testud F, Zaitsev M. Predicting field distortions in the human brain using a susceptibility model of the head. Proceedings of the 20th Annual Meeting of ISMRM; Melbourne, Australia. 2012; p. 3386. [Google Scholar]
- 42.Idiyatullin D, Corum C, Moeller S, Prasad HS, Garwood M, Nixdorf DR. Dental MRI: Making the Invisible Visible. J Endod. 2011;37:745–752. doi: 10.1016/j.joen.2011.02.022. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 43.Wiesinger F, Sacolick LI, Menini A, Kaushik SS, Ahn S, Veit-Haibach P, Delso G, Shanbhag DD. Zero TE MR bone imaging in the head. Magn Reson Med. 2016;75:107–114. doi: 10.1002/mrm.25545. [DOI] [PubMed] [Google Scholar]
- 44.Juchem C, Nixon TW, McIntyre S, Boer VO, Rothman DL, de Graaf RA. Dynamic Multi-Coil Shimming of the Human Brain at 7 Tesla. J Magn Reson. 2011;212:280–288. doi: 10.1016/j.jmr.2011.07.005. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 45.Stockmann JP, Witzel T, Keil B, Polimeni JR, Mareyam A, LaPierre C, Setsompop K, Wald LL. A 32-channel combined RF and B0 shim array for 3T brain imaging. Magn Reson Med. 2016;75:441–451. doi: 10.1002/mrm.25587. [DOI] [PMC free article] [PubMed] [Google Scholar]
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