REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Bacterial and Virus Strains | ||
Thermus thermophilus: strain HB8 | Laboratory of Dr. K. Severinov | ATCC: 27634 |
Thermus bacteriophage P74–26 | Laboratory of Dr. K. Severinov | TAX: 466052 |
Deposited Data | ||
P74–26 Head Decoration Protein structure | This Paper | PDB: 6BL5 |
Oligonucleotides | ||
P74–26 gp87 forward
primer: GATCGGATCCATGGATAAAATTCAACTG |
This Paper | N/A |
P74–26 gp87 reverse
primer: GATCCTCGAGTCAG CGCGTGTAGTCAAAGAAATAG |
This Paper | N/A |
Recombinant DNA | ||
pSMT3 vector | Yunus and Lima, 2009 | N/A |
Software and Algorithms | ||
Phenix | Adams et al., 2010 | http://www.phenix-online.org/ |
HKL 3000 | Otwinowski and Minor, 1997 | http://www.hkl-xray.com/hkl-3000 |
COOT | Emsley and Cowtan, 2004 | http://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/ |
ImageJ | Schneider et al., 2012 | http://imagej.nih.gov/ij/ |
DALI server | Holm and Rosenstrom, 2010 | http://ekhidna.biocenter.helsinki.fi/dali_server/ |
NCBI VAST | Madej et al., 2014 | http://www.ncbi.nlm.nih.gov/Structure/VAST/vast.shtml |
PDBeFold | Krissinel and Henrick, 2004 | www.ebi.ac.uk/msd-srv/ssm/ |
Clustal Omega | Sievers et al., 2011 | www.ebi.ac.uk/Tools/msa/clustalo/ |
InterProSurf | Negi et al., 2007 | http://curie.utmb.edu/prosurf |
BASiC Networks | Kathuria et al., 2016 | http://biotools.umassmed.edu/ccss/ccssv2/basic.cgi |