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Sequence logos for anchor pocket residues of MHC II chains. The residues making up anchor pockets 1, 4, 6, 7, and 9 are separated by gray vertical lines. Pocket 1 consists of residue 86. Pocket 4 consists of residues 13, 70, 71, 74, and 78. Pocket 6 consists of residue 11. Pocket 7 consists of residues 28, 30, 47, 61, 67, and 71. Pocket 9 consists of residues 9, 37, 57, 60, and 61. The residues are numbered based on the HLA-DR chain.
