The title compound crystallizes in monoclinic (space group P21/c) and triclinic (space group Pī) forms from N,N-dimethylformamide and isopropyl alcohol solutions, respectively. The planar structures of the molecules in both crystals are essentially the same as each other, with maximum deviations of 0.0969 (11) and 0.209 (4) Å for the monoclinic and triclinic forms, respectively, from the mean planes of all non-H atoms.
Keywords: crystal structure; naphthalene-1,4-dione; naphthoquinone; polymorphs
Abstract
The title compound, C13H8O3, crystallizes in two polymorphs, namely the monoclinic (space group P21/c) and triclinic (space group Pī) forms, obtained from N,N-dimethylformamide and isopropyl alcohol solutions, respectively. The molecular structures and conformations in the two forms are essentially the same as each other. The naphthoquinone ring systems are essentially planar with r.m.s. deviations of 0.015 and 0.029 Å for the monoclinic and triclinic forms, respectively. The O-propargyl groups are coplanar with the naphthoquinone units with r.m.s deviations ranging from 0.04 to 0.09 Å. In the monoclinic crystal, molecules are linked via pairs of C—H⋯O hydrogen bonds, forming a tape structure running along [120]. The tapes are further linked by a C—H⋯π interaction into a layer parallel to the ab plane. Adjacent layers are linked by another C—H⋯π interaction. In the triclinic crystal, molecules are linked via C—H⋯O and π–π interactions, forming a layer parallel to the ab plane. Adjacent layers are linked by a C—H⋯π interaction.
Chemical context
Naphthoquinone derivatives have been studied intensively over the past few decades, mostly because of their numerous biological activities, mainly antimicrobial and antitumor (Fujii et al., 1992 ▸; Hussain et al., 2007 ▸; Epifano et al., 2014 ▸). The main mechanism of the activity is related to the formation of reactive oxygen species (ROS) through semiquinonic radicals, which cause damage to cell macromolecules and consequently cell death (Da Silva et al., 2003 ▸). Among the substances that comprise this class, some synthetic bioactive derivatives have been obtained from lawsone (2-hydroxynaphthalene-1,4-dione) (Jordão et al., 2015 ▸). In a basic medium, lawsone shows three sites able to be alkylated (Lamoureux et al., 2008 ▸), resulting in O-alkyl and C-alkyl derivatives difficult to purify in some cases in some cases (Kongkathip et al., 2003 ▸). The title compound was obtained in higher yields since oxygen better accommodates the negative charge generated in the enolate formation, using a weak base, propargyl bromide, aprotic solvent and heat. The product has an alkyne terminal chain and can be used as the starting material in the synthesis of triazole derivatives, which are widely exploited in medicinal chemistry (Haider et al., 2014 ▸). The present study shows that the title compound has two polymorphs, monoclinic (space group P21/c) and triclinic (space group Pī), crystallized from N,N-dimethylformamide (DMF) and isopropyl alcohol, respectively.
Structural commentary
The molecular structures in the two polymorphs are essentially the same (Fig. 1 ▸). The naphthoquinone ring systems in the monoclinic and triclinic forms are both planar, with r.m.s. deviations of 0.015 and 0.029 Å, respectively, for the non-H atoms. Each propargyl group is coplanar with the naphthoquinone ring system, with C1—C2—O3—C11 and C2—O3—C11—C12 torsion angles being −178.8 (1) and 175.9 (1)°, respectively, for the monoclinic form, and −177.1 (3) and −171.9 (3)°, respectively, for the triclinic form.
Figure 1.
(a) The molecular structure of the title compound (monoclinic form) with the atom labelling. Displacement ellipsoids of non-H atoms are drawn at the 50% probability level. (b) A view of the overlay of the molecular structures of the monoclinic and triclinic forms of the title compound.
Supramolecular features
The molecular arrangements in both crystals are similar (Fig. 2 ▸) with nearly the same crystal densities (ρ = 1.383 and 1.392 Mg m−3 for the monoclinic and triclinic forms, respectively). In the monoclinic crystal, molecules are linked via pairs of C—H⋯O hydrogen bonds (C3—H3⋯O2i and C13—H13⋯O1ii; symmetry codes as in Table 1 ▸), forming a tape structure running along [120]. The tapes are further linked by a C—H⋯π interaction (C11—H11A⋯Cg2iii; Table 1 ▸) into a layer parallel to the ab plane; Cg2 is the centroid of the C12≡C13 triple bond [Fig. 3 ▸(a)]. In the layer, molecules are arranged parallel to each other and adjacent layers are linked by another C—H⋯π interaction (C7—H7⋯Cg2iv; Table 1 ▸), forming a three-dimensional network [Fig. 4 ▸(a)]. In the triclinic crystal, molecules are linked via C—H⋯O interactions (C3—H3⋯O2i, C11—H11B⋯O2 ii and C13—H13⋯O1iii; Table 1 ▸) and π–π interactions with centroid-centroid distances of 3.9906 (18) and 3.991 (2) Å, respectively, between C1–C4/C10/C9 rings and between C5–C10 rings, forming a layer parallel to the ab plane [Fig. 3 ▸(b)]. Adjacent layers are linked by a C—H⋯π interaction [Fig. 4( ▸ b); C7—H7⋯Cg2v; Table 1 ▸].
Figure 2.
Packing diagrams of the title compound, showing the stacked naphthoquinone molecules: (a) monoclinic form viewed along the b axis and (b) triclinic form viewed along the a axis.
Table 1. Hydrogen-bond geometry (Å, °).
Cg2 is the midpoint of the C12≡C13 bond.
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| Monoclinic form | ||||
| C3—H3⋯O2i | 0.93 | 2.58 | 3.436 (2) | 153 |
| C13—H13⋯O1ii | 0.93 | 2.33 | 3.350 (2) | 173 |
| C11—H11A⋯Cg2iii | 0.97 | 2.91 | 3.740 (4) | 145 |
| C7—H7⋯Cg2iv | 0.93 | 2.87 | 3.703 (4) | 151 |
| Triclinic form | ||||
| C3—H3⋯O2i | 0.93 | 2.49 | 3.409 (4) | 173 |
| C11—H11B⋯O2ii | 0.97 | 2.52 | 3.380 (4) | 149 |
| C13—H13⋯O1iii | 0.93 | 2.44 | 3.340 (5) | 164 |
| C7—H7⋯Cg2v | 0.93 | 2.93 | 3.829 (4) | 162 |
Symmetry codes: monoclinic: (i) −1 − x, 2 − y, 1 − z; (ii) −x, −y, 1 − z; (iii) x, −1 + y, z; (iv) x,
− y, −
+ z. Triclinic: (i) 2 − x, 1 − y, 1 − z; (ii) 1 − x, 1 − y, 1 − z; (iii) −x, 2 − y, 1 − z; (iv) −x, 2 − y, −z; (v) x, y, −1 + z.
Figure 3.
Selected intermolecular interactions in the crystals of (a) the monoclinic form and (b) the triclinic form. Purple dashed lines represent the C—H⋯O hydrogen bonds and green dashed lines the C—H⋯π and π–π interactions. Cg1 is the centroid of the C5–C10 ring, while Cg2 is the midpoint of the C12≡C13 bond.
Figure 4.
Partial packing diagrams of (a) the monoclinic form and (b) the triclinic from. Purple dashed lines represent the C—H⋯O hydrogen bonds and green dashed lines the C—H⋯π and π–π interactions.
Database survey
A search of the Cambridge Structural Database (Version 5.38; Groom et al., 2016 ▸) for naphthalene-1,4-dione gave about 790 structures. Among them, 2-methoxynaphthalene-1,4-dione (Jin et al., 2011 ▸) and 2-{[1-(4-bromobenzyl)-1H-1,2,3-triazol-4-yl]methoxy}naphthalene-1,4-dione (Raja et al., 2015 ▸) are very similar to the title compound. These compounds exhibit additional functional groups linked at O3 and essentially planar naphthoquinone ring systems and C—H⋯O and π–π interactions are also observed in their crystal structures.
Synthesis and crystallization
The synthesis of the title compound was achieved in one step according to the literature method (Raja et al., 2015 ▸). To a solution of lawsone (0.20 g, 1.15 mmol) in DMF (10 ml) was added K2CO3 (0.16 g, 1.15 mmol) and propargyl bromide (0.48 g, 4.07 mmol). The mixture was stirred at 363 K for 24 h. Then hydrochloric acid (1.0 mol l−1, 0.34 ml) was added and the resulting solution was extracted with dichloromethane (3 × 25 ml). The organic layers were washed with water (60 ml), dried over anhydrous sodium sulfate and concentrated. The solid obtained was purified by column chromatography using silica gel and hexane–ethyl acetate (9:1) and furnished the title compound in 70% yield. Yellow single crystals of the monoclinic and triclinic forms (m.p. 420.0–423.1 K) suitable for X-ray diffraction were obtained by slow evaporation of DMF and isopropyl alcohol solutions (about 0.5 mg ml-1), respectively, at room temperature.
Spectrometric data. IR νmax (cm−1): The spectrum show the characteristic absorption bands of the main functional groups for title compound at IR (ν max/cm−1): 3250 (C—H alkyne), 3053 (C—H aromatic), 2130 (C≡C) 1649, 1680 (C=O quinone), 1575–1604 (C—C aromatic), 1016, 1208 and 1245 (C—O).1H NMR (400 MHz, CDCl3): δ H 8.12 (dd, 1H, J 5,6 7.1 Hz, J 8,7 1.9 Hz, H-5), 8,07 (dd, 1H, J 8,7 7.0 Hz, J 8,6 1.9 Hz, H-8), 7.74 (td, 1H, J 6,5 7.5 Hz, J 6,7 7.5 Hz, J 6,8 1.7 Hz, H-6), 7.70 (td, 1H, J 7,6 7.4 Hz, J 7,8 7.4 Hz, J 7,5 1.6 Hz, H-7), 6.33 (s, 1H, H-3), 4.78 (d, 2H, J 11,13 2.4 Hz, H-11), 2.63 (t, 1H, J 13,11 2.4 Hz, H-13). 13C NMR (100 MHz, CDCl3): δ C 184.6 (C-4), 179.8 (C-1), 158.1 (C-2), 134.3 (C-6), 133.4 (C-7), 131.9 (C-10), 131.1 (C-9), 126.7 (C-5), 126.2 (C-8), 111.6 (C-3), 78.2 (C-13), 75.5 (C-12), 56.7 (C-11).
Refinement
Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. C-bound H atoms were constrained to an ideal geometry with C—H = 0.93–0.97 Å and with U iso(H) = 1.2U eq (C).
Table 2. Experimental details.
| Monoclinic | Triclinic | |
|---|---|---|
| Crystal data | ||
| Chemical formula | C13H8O3 | C13H8O3 |
| M r | 212.19 | 212.19 |
| Crystal system, space group | Monoclinic, P21/c | Triclinic, P
|
| Temperature (K) | 293 | 293 |
| a, b, c (Å) | 10.0911 (7), 4.8021 (3), 20.8939 (15) | 3.9906 (6), 11.6943 (16), 12.3413 (16) |
| α, β, γ (°) | 90, 91.174 (7), 90 | 63.347 (14), 83.343 (12), 83.018 (12) |
| V (Å3) | 1012.27 (12) | 509.69 (14) |
| Z | 4 | 2 |
| Radiation type | Mo Kα | Mo Kα |
| μ (mm−1) | 0.10 | 0.10 |
| Crystal size (mm) | 0.35 × 0.2 × 0.1 | 0.35 × 0.2 × 0.1 |
| Data collection | ||
| Diffractometer | Rigaku Xcalibur Atlas Gemini ultra | Rigaku Xcalibur Atlas Gemini ultra |
| Absorption correction | Multi-scan (CrysAlis PRO; Rigaku OD, 2015 ▸) | Multi-scan (CrysAlis PRO; Rigaku OD, 2015 ▸) |
| T min, T max | 0.764, 1.000 | 0.773, 1.000 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 10652, 3452, 1765 | 7730, 2503, 923 |
| R int | 0.058 | 0.084 |
| Refinement | ||
| R[F 2 > 2σ(F 2)], wR(F 2), S | 0.059, 0.156, 1.01 | 0.064, 0.184, 1.00 |
| No. of reflections | 3452 | 2503 |
| No. of parameters | 145 | 145 |
| H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.19, −0.20 | 0.24, −0.24 |
Supplementary Material
Crystal structure: contains datablock(s) Monoclinic, Triclinic, OPLAU. DOI: 10.1107/S2056989018015438/is5501sup1.cif
Supporting information file. DOI: 10.1107/S2056989018015438/is5501Monoclinicsup2.cml
Additional supporting information: crystallographic information; 3D view; checkCIF report
supplementary crystallographic information
2-(Prop-2-yn-1-yloxy)naphthalene-1,4-dione (Monoclinic). Crystal data
| C13H8O3 | F(000) = 440 |
| Mr = 212.19 | Dx = 1.392 Mg m−3 |
| Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
| a = 10.0911 (7) Å | Cell parameters from 1655 reflections |
| b = 4.8021 (3) Å | θ = 3.9–30.6° |
| c = 20.8939 (15) Å | µ = 0.10 mm−1 |
| β = 91.174 (7)° | T = 293 K |
| V = 1012.27 (12) Å3 | Rod, yellow |
| Z = 4 | 0.35 × 0.2 × 0.1 mm |
2-(Prop-2-yn-1-yloxy)naphthalene-1,4-dione (Monoclinic). Data collection
| Rigaku Xcalibur Atlas Gemini ultra diffractometer | 3452 independent reflections |
| Radiation source: fine-focus sealed X-ray tube, Enhance (Mo) X-ray Source | 1765 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.058 |
| Detector resolution: 10.4186 pixels mm-1 | θmax = 32.8°, θmin = 2.8° |
| ω scans | h = −13→15 |
| Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2015) | k = −7→7 |
| Tmin = 0.764, Tmax = 1.000 | l = −30→31 |
| 10652 measured reflections |
2-(Prop-2-yn-1-yloxy)naphthalene-1,4-dione (Monoclinic). Refinement
| Refinement on F2 | Primary atom site location: dual |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.059 | H-atom parameters constrained |
| wR(F2) = 0.156 | w = 1/[σ2(Fo2) + (0.0571P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 1.00 | (Δ/σ)max < 0.001 |
| 3452 reflections | Δρmax = 0.19 e Å−3 |
| 145 parameters | Δρmin = −0.20 e Å−3 |
| 0 restraints |
2-(Prop-2-yn-1-yloxy)naphthalene-1,4-dione (Monoclinic). Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
2-(Prop-2-yn-1-yloxy)naphthalene-1,4-dione (Monoclinic). Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.08336 (12) | 0.4803 (2) | 0.34723 (5) | 0.0512 (3) | |
| O2 | 0.50658 (13) | 1.0905 (3) | 0.41264 (6) | 0.0646 (4) | |
| O3 | 0.19024 (11) | 0.3978 (2) | 0.46005 (5) | 0.0493 (3) | |
| C1 | 0.17768 (15) | 0.6268 (3) | 0.36127 (7) | 0.0381 (4) | |
| C2 | 0.24795 (16) | 0.5949 (3) | 0.42459 (7) | 0.0390 (4) | |
| C3 | 0.35379 (16) | 0.7492 (3) | 0.44063 (7) | 0.0434 (4) | |
| H3 | 0.3937 | 0.7248 | 0.4807 | 0.052* | |
| C4 | 0.40849 (16) | 0.9546 (3) | 0.39706 (8) | 0.0419 (4) | |
| C5 | 0.38922 (16) | 1.1922 (3) | 0.29135 (8) | 0.0445 (4) | |
| H5 | 0.4645 | 1.2953 | 0.3021 | 0.053* | |
| C6 | 0.32525 (17) | 1.2340 (4) | 0.23311 (8) | 0.0495 (4) | |
| H6 | 0.3576 | 1.3651 | 0.2046 | 0.059* | |
| C7 | 0.21324 (18) | 1.0817 (4) | 0.21695 (8) | 0.0528 (5) | |
| H7 | 0.1701 | 1.1116 | 0.1778 | 0.063* | |
| C8 | 0.16518 (16) | 0.8854 (4) | 0.25877 (8) | 0.0460 (4) | |
| H8 | 0.0899 | 0.7832 | 0.2477 | 0.055* | |
| C9 | 0.22882 (15) | 0.8402 (3) | 0.31716 (7) | 0.0362 (3) | |
| C10 | 0.34126 (15) | 0.9961 (3) | 0.33397 (7) | 0.0363 (4) | |
| C11 | 0.24569 (19) | 0.3468 (3) | 0.52323 (7) | 0.0488 (4) | |
| H11A | 0.2477 | 0.5175 | 0.5480 | 0.059* | |
| H11B | 0.3354 | 0.2761 | 0.5204 | 0.059* | |
| C12 | 0.16027 (19) | 0.1408 (4) | 0.55324 (8) | 0.0510 (5) | |
| C13 | 0.0907 (2) | −0.0220 (4) | 0.57682 (9) | 0.0649 (6) | |
| H13 | 0.0352 | −0.1518 | 0.5956 | 0.078* |
2-(Prop-2-yn-1-yloxy)naphthalene-1,4-dione (Monoclinic). Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0476 (7) | 0.0589 (7) | 0.0465 (7) | −0.0115 (6) | −0.0106 (5) | 0.0087 (5) |
| O2 | 0.0593 (8) | 0.0758 (9) | 0.0578 (9) | −0.0230 (7) | −0.0195 (6) | 0.0080 (7) |
| O3 | 0.0576 (8) | 0.0521 (7) | 0.0377 (6) | −0.0075 (6) | −0.0101 (5) | 0.0117 (5) |
| C1 | 0.0386 (8) | 0.0394 (8) | 0.0362 (8) | 0.0037 (7) | −0.0047 (6) | −0.0009 (7) |
| C2 | 0.0474 (9) | 0.0381 (8) | 0.0315 (8) | 0.0030 (7) | −0.0020 (7) | 0.0039 (6) |
| C3 | 0.0494 (9) | 0.0474 (9) | 0.0330 (8) | 0.0008 (8) | −0.0112 (7) | 0.0019 (7) |
| C4 | 0.0415 (9) | 0.0438 (9) | 0.0402 (9) | 0.0014 (7) | −0.0068 (7) | −0.0023 (7) |
| C5 | 0.0397 (8) | 0.0453 (9) | 0.0485 (10) | −0.0006 (7) | 0.0016 (7) | 0.0030 (8) |
| C6 | 0.0524 (10) | 0.0523 (10) | 0.0439 (10) | 0.0008 (8) | 0.0037 (8) | 0.0122 (8) |
| C7 | 0.0571 (11) | 0.0630 (11) | 0.0380 (9) | 0.0015 (9) | −0.0095 (8) | 0.0115 (8) |
| C8 | 0.0453 (9) | 0.0519 (10) | 0.0405 (9) | −0.0034 (8) | −0.0086 (7) | 0.0065 (7) |
| C9 | 0.0367 (8) | 0.0374 (8) | 0.0343 (8) | 0.0040 (7) | −0.0028 (6) | 0.0017 (6) |
| C10 | 0.0361 (8) | 0.0369 (8) | 0.0356 (8) | 0.0060 (6) | −0.0025 (6) | −0.0011 (6) |
| C11 | 0.0655 (11) | 0.0482 (10) | 0.0323 (8) | −0.0007 (9) | −0.0078 (7) | 0.0043 (7) |
| C12 | 0.0674 (12) | 0.0489 (10) | 0.0366 (9) | 0.0023 (9) | −0.0013 (8) | 0.0006 (8) |
| C13 | 0.0780 (15) | 0.0633 (12) | 0.0536 (12) | −0.0049 (11) | 0.0071 (10) | 0.0095 (10) |
2-(Prop-2-yn-1-yloxy)naphthalene-1,4-dione (Monoclinic). Geometric parameters (Å, º)
| O1—C1 | 1.2145 (18) | C8—C7 | 1.380 (2) |
| O2—C4 | 1.2241 (18) | C8—H8 | 0.9300 |
| O3—C2 | 1.3423 (18) | C9—C10 | 1.398 (2) |
| O3—C11 | 1.4442 (19) | C9—C1 | 1.478 (2) |
| C1—C2 | 1.496 (2) | C9—C8 | 1.384 (2) |
| C2—C3 | 1.337 (2) | C10—C4 | 1.483 (2) |
| C3—H3 | 0.9300 | C10—C5 | 1.390 (2) |
| C4—C3 | 1.458 (2) | C11—C12 | 1.462 (3) |
| C5—C6 | 1.380 (2) | C11—H11A | 0.9700 |
| C5—H5 | 0.9300 | C11—H11B | 0.9700 |
| C6—C7 | 1.382 (2) | C12—C13 | 1.167 (2) |
| C6—H6 | 0.9300 | C13—H13 | 0.9300 |
| C7—H7 | 0.9300 | ||
| O1—C1—C9 | 122.19 (14) | C6—C5—H5 | 120.0 |
| O1—C1—C2 | 120.61 (14) | C6—C7—H7 | 119.9 |
| O2—C4—C10 | 121.15 (15) | C7—C8—C9 | 120.16 (16) |
| O2—C4—C3 | 120.59 (15) | C7—C6—H6 | 119.9 |
| O3—C2—C1 | 110.92 (14) | C7—C8—H8 | 119.9 |
| O3—C11—H11A | 110.4 | C8—C9—C10 | 119.80 (14) |
| O3—C11—H11B | 110.4 | C8—C9—C1 | 119.77 (14) |
| O3—C11—C12 | 106.62 (14) | C8—C7—C6 | 120.20 (16) |
| C2—O3—C11 | 117.37 (13) | C8—C7—H7 | 119.9 |
| C2—C3—C4 | 121.94 (14) | C9—C10—C4 | 120.35 (14) |
| C2—C3—H3 | 119.0 | C9—C1—C2 | 117.20 (14) |
| C3—C2—O3 | 127.29 (15) | C9—C8—H8 | 119.9 |
| C3—C2—C1 | 121.78 (14) | C10—C9—C1 | 120.42 (14) |
| C3—C4—C10 | 118.26 (14) | C10—C5—H5 | 120.0 |
| C4—C3—H3 | 119.0 | H11A—C11—H11B | 108.6 |
| C5—C6—H6 | 119.9 | C12—C11—H11A | 110.4 |
| C5—C6—C7 | 120.24 (15) | C12—C11—H11B | 110.4 |
| C5—C10—C9 | 119.55 (14) | C12—C13—H13 | 180.0 |
| C5—C10—C4 | 120.10 (15) | C13—C12—C11 | 179.1 (2) |
| C6—C5—C10 | 120.05 (16) | ||
| O1—C1—C2—O3 | −1.5 (2) | C8—C9—C1—C2 | −177.9 (1) |
| O1—C1—C2—C3 | 178.5 (1) | C9—C1—C2—O3 | 179.1 (1) |
| O2—C4—C3—C2 | −179.0 (2) | C9—C10—C4—O2 | −179.6 (2) |
| O3—C2—C3—C4 | 178.9 (1) | C9—C10—C5—C6 | 0.6 (2) |
| C1—C9—C8—C7 | −179.2 (2) | C9—C8—C7—C6 | 0.1 (3) |
| C1—C9—C10—C5 | 178.8 (1) | C9—C1—C2—C3 | −1.0 (2) |
| C1—C9—C10—C4 | −1.7 (2) | C9—C10—C4—C3 | −0.3 (2) |
| C1—C2—C3—C4 | −1.0 (2) | C10—C9—C1—O1 | −177.1 (1) |
| C2—O3—C11—C12 | 175.9 (1) | C10—C5—C6—C7 | 0.1 (3) |
| C5—C10—C4—O2 | −0.1 (2) | C10—C9—C8—C7 | 0.7 (2) |
| C5—C6—C7—C8 | −0.5 (3) | C10—C9—C1—C2 | 2.3 (2) |
| C8—C9—C1—O1 | 2.7 (2) | C10—C4—C3—C2 | 1.7 (2) |
| C8—C9—C10—C5 | −1.0 (2) | C11—O3—C2—C3 | 1.2 (2) |
| C8—C9—C10—C4 | 178.5 (1) | C11—O3—C2—C1 | −178.8 (1) |
2-(Prop-2-yn-1-yloxy)naphthalene-1,4-dione (Triclinic). Crystal data
| C13H8O3 | Z = 2 |
| Mr = 212.19 | F(000) = 220 |
| Triclinic, P1 | Dx = 1.383 Mg m−3 |
| a = 3.9906 (6) Å | Mo Kα radiation, λ = 0.71073 Å |
| b = 11.6943 (16) Å | Cell parameters from 796 reflections |
| c = 12.3413 (16) Å | θ = 3.2–22.3° |
| α = 63.347 (14)° | µ = 0.10 mm−1 |
| β = 83.343 (12)° | T = 293 K |
| γ = 83.018 (12)° | Rod, yellow |
| V = 509.69 (14) Å3 | 0.35 × 0.2 × 0.1 mm |
2-(Prop-2-yn-1-yloxy)naphthalene-1,4-dione (Triclinic). Data collection
| Rigaku Xcalibur Atlas Gemini ultra diffractometer | 2503 independent reflections |
| Radiation source: fine-focus sealed X-ray tube, Enhance (Mo) X-ray Source | 923 reflections with I > 2σ(I) |
| Graphite monochromator | Rint = 0.084 |
| Detector resolution: 10.4186 pixels mm-1 | θmax = 29.5°, θmin = 3.2° |
| ω scans | h = −5→5 |
| Absorption correction: multi-scan (CrysAlis PRO; Rigaku OD, 2015) | k = −14→15 |
| Tmin = 0.773, Tmax = 1.000 | l = −16→16 |
| 7730 measured reflections |
2-(Prop-2-yn-1-yloxy)naphthalene-1,4-dione (Triclinic). Refinement
| Refinement on F2 | Primary atom site location: dual |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| R[F2 > 2σ(F2)] = 0.064 | H-atom parameters constrained |
| wR(F2) = 0.184 | w = 1/[σ2(Fo2) + (0.0469P)2] where P = (Fo2 + 2Fc2)/3 |
| S = 1.00 | (Δ/σ)max < 0.001 |
| 2503 reflections | Δρmax = 0.24 e Å−3 |
| 145 parameters | Δρmin = −0.23 e Å−3 |
| 0 restraints |
2-(Prop-2-yn-1-yloxy)naphthalene-1,4-dione (Triclinic). Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
2-(Prop-2-yn-1-yloxy)naphthalene-1,4-dione (Triclinic). Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| O1 | 0.1734 (6) | 0.9294 (2) | 0.1987 (2) | 0.0641 (7) | |
| O2 | 0.9527 (6) | 0.4894 (2) | 0.3422 (2) | 0.0669 (8) | |
| O3 | 0.3732 (5) | 0.82577 (18) | 0.41940 (19) | 0.0502 (6) | |
| C1 | 0.3597 (7) | 0.8310 (3) | 0.2279 (3) | 0.0434 (8) | |
| C2 | 0.4859 (7) | 0.7629 (3) | 0.3529 (3) | 0.0403 (8) | |
| C3 | 0.6822 (7) | 0.6529 (3) | 0.3868 (3) | 0.0446 (8) | |
| H3 | 0.7612 | 0.6142 | 0.4642 | 0.053* | |
| C4 | 0.7756 (7) | 0.5920 (3) | 0.3068 (3) | 0.0469 (8) | |
| C5 | 0.7466 (8) | 0.6005 (3) | 0.1040 (3) | 0.0623 (10) | |
| H5 | 0.8690 | 0.5209 | 0.1307 | 0.075* | |
| C6 | 0.6507 (9) | 0.6636 (4) | −0.0147 (4) | 0.0734 (12) | |
| H6 | 0.7105 | 0.6264 | −0.0676 | 0.088* | |
| C7 | 0.4685 (9) | 0.7804 (4) | −0.0543 (3) | 0.0693 (11) | |
| H7 | 0.4083 | 0.8226 | −0.1343 | 0.083* | |
| C8 | 0.3734 (8) | 0.8360 (3) | 0.0234 (3) | 0.0544 (9) | |
| H8 | 0.2467 | 0.9147 | −0.0038 | 0.065* | |
| C9 | 0.4678 (7) | 0.7737 (3) | 0.1427 (3) | 0.0428 (8) | |
| C10 | 0.6598 (7) | 0.6563 (3) | 0.1823 (3) | 0.0447 (8) | |
| C11 | 0.4891 (8) | 0.7741 (3) | 0.5405 (3) | 0.0532 (9) | |
| H11A | 0.7294 | 0.7831 | 0.5362 | 0.064* | |
| H11B | 0.4510 | 0.6837 | 0.5849 | 0.064* | |
| C12 | 0.2992 (8) | 0.8455 (3) | 0.6013 (3) | 0.0518 (9) | |
| C13 | 0.1377 (9) | 0.9034 (3) | 0.6476 (3) | 0.0692 (11) | |
| H13 | 0.0087 | 0.9496 | 0.6846 | 0.083* |
2-(Prop-2-yn-1-yloxy)naphthalene-1,4-dione (Triclinic). Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| O1 | 0.0807 (17) | 0.0553 (14) | 0.0518 (16) | 0.0214 (13) | −0.0130 (12) | −0.0243 (12) |
| O2 | 0.0784 (17) | 0.0510 (14) | 0.0670 (17) | 0.0249 (13) | −0.0154 (13) | −0.0273 (12) |
| O3 | 0.0621 (14) | 0.0495 (13) | 0.0460 (14) | 0.0123 (10) | −0.0128 (11) | −0.0294 (11) |
| C1 | 0.0431 (18) | 0.0423 (18) | 0.044 (2) | 0.0002 (14) | 0.0003 (15) | −0.0204 (16) |
| C2 | 0.0425 (18) | 0.0415 (18) | 0.040 (2) | 0.0020 (14) | −0.0068 (14) | −0.0206 (16) |
| C3 | 0.0479 (19) | 0.0440 (18) | 0.0411 (19) | 0.0029 (15) | −0.0038 (14) | −0.0195 (15) |
| C4 | 0.0456 (19) | 0.0450 (19) | 0.048 (2) | −0.0002 (15) | −0.0002 (15) | −0.0204 (16) |
| C5 | 0.068 (2) | 0.068 (2) | 0.064 (3) | 0.0107 (19) | −0.0070 (19) | −0.044 (2) |
| C6 | 0.077 (3) | 0.095 (3) | 0.069 (3) | 0.009 (2) | −0.008 (2) | −0.057 (3) |
| C7 | 0.073 (3) | 0.089 (3) | 0.052 (2) | 0.003 (2) | −0.0072 (19) | −0.038 (2) |
| C8 | 0.059 (2) | 0.055 (2) | 0.043 (2) | 0.0090 (17) | −0.0107 (17) | −0.0171 (18) |
| C9 | 0.0392 (18) | 0.0492 (19) | 0.045 (2) | −0.0027 (14) | 0.0019 (15) | −0.0268 (16) |
| C10 | 0.0482 (19) | 0.0462 (19) | 0.043 (2) | 0.0013 (15) | −0.0035 (15) | −0.0238 (16) |
| C11 | 0.051 (2) | 0.066 (2) | 0.050 (2) | 0.0075 (17) | −0.0159 (17) | −0.0329 (19) |
| C12 | 0.056 (2) | 0.058 (2) | 0.046 (2) | 0.0043 (17) | −0.0090 (17) | −0.0274 (18) |
| C13 | 0.078 (3) | 0.079 (3) | 0.054 (2) | 0.018 (2) | −0.0136 (19) | −0.036 (2) |
2-(Prop-2-yn-1-yloxy)naphthalene-1,4-dione (Triclinic). Geometric parameters (Å, º)
| O1—C1 | 1.220 (3) | C7—H7 | 0.9300 |
| O2—C4 | 1.236 (3) | C8—C7 | 1.378 (4) |
| O3—C2 | 1.339 (3) | C8—H8 | 0.9300 |
| O3—C11 | 1.447 (3) | C9—C8 | 1.394 (4) |
| C1—C2 | 1.499 (4) | C10—C9 | 1.393 (4) |
| C1—C9 | 1.481 (4) | C10—C4 | 1.478 (4) |
| C2—C3 | 1.339 (3) | C10—C5 | 1.382 (4) |
| C3—H3 | 0.9300 | C11—H11A | 0.9700 |
| C4—C3 | 1.449 (4) | C11—H11B | 0.9700 |
| C5—H5 | 0.9300 | C12—C11 | 1.454 (4) |
| C5—C6 | 1.389 (5) | C12—C13 | 1.164 (4) |
| C6—H6 | 0.9300 | C13—H13 | 0.9300 |
| C6—C7 | 1.369 (4) | ||
| O1—C1—C2 | 120.7 (3) | C6—C5—H5 | 120.1 |
| O1—C1—C9 | 121.8 (3) | C7—C8—C9 | 119.7 (3) |
| O3—C2—C1 | 111.2 (2) | C7—C8—H8 | 120.1 |
| O3—C11—C12 | 107.6 (2) | C7—C6—C5 | 120.2 (3) |
| O3—C11—H11A | 110.2 | C7—C6—H6 | 119.9 |
| O3—C11—H11B | 110.2 | C8—C7—H7 | 119.7 |
| O2—C4—C10 | 121.0 (3) | C8—C9—C1 | 120.2 (3) |
| O2—C4—C3 | 120.2 (3) | C9—C8—H8 | 120.1 |
| C2—C3—C4 | 122.2 (3) | C9—C10—C4 | 120.3 (3) |
| C2—O3—C11 | 117.2 (2) | C9—C1—C2 | 117.5 (3) |
| C2—C3—H3 | 118.9 | C10—C9—C1 | 120.1 (3) |
| C3—C2—O3 | 127.8 (3) | C10—C9—C8 | 119.7 (3) |
| C3—C2—C1 | 121.0 (3) | C10—C5—H5 | 120.1 |
| C3—C4—C10 | 118.7 (3) | C10—C5—C6 | 119.9 (3) |
| C4—C3—H3 | 118.9 | H11A—C11—H11B | 108.5 |
| C5—C10—C9 | 119.8 (3) | C12—C11—H11A | 110.2 |
| C5—C10—C4 | 119.9 (3) | C12—C11—H11B | 110.2 |
| C5—C6—H6 | 119.9 | C12—C13—H13 | 180.0 |
| C6—C7—C8 | 120.6 (4) | C13—C12—C11 | 177.6 (3) |
| C6—C7—H7 | 119.7 | ||
| O1—C1—C2—O3 | −1.3 (4) | C5—C10—C9—C1 | 177.0 (3) |
| O1—C1—C2—C3 | 178.0 (3) | C5—C10—C9—C8 | −2.0 (5) |
| O1—C1—C9—C10 | −175.2 (3) | C5—C10—C4—O2 | 0.8 (5) |
| O1—C1—C9—C8 | 3.8 (5) | C5—C10—C4—C3 | 179.7 (3) |
| O2—C4—C3—C2 | −178.8 (3) | C5—C6—C7—C8 | −1.0 (6) |
| O3—C2—C3—C4 | 177.5 (3) | C9—C1—C2—O3 | 179.1 (3) |
| C1—C2—C3—C4 | −1.7 (5) | C9—C1—C2—C3 | −1.5 (5) |
| C1—C9—C8—C7 | −178.5 (3) | C9—C10—C5—C6 | 1.9 (5) |
| C2—O3—C11—C12 | −171.9 (3) | C9—C8—C7—C6 | 1.0 (6) |
| C2—C1—C9—C10 | 4.4 (5) | C10—C9—C8—C7 | 0.5 (5) |
| C2—C1—C9—C8 | −176.6 (3) | C10—C4—C3—C2 | 2.3 (5) |
| C4—C10—C9—C1 | −3.9 (5) | C10—C5—C6—C7 | −0.5 (6) |
| C4—C10—C9—C8 | 177.1 (3) | C11—O3—C2—C1 | −177.1 (3) |
| C4—C10—C5—C6 | −177.1 (3) | C11—O3—C2—C3 | 3.7 (5) |
Funding Statement
This work was funded by Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (CAPES) grant . Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) grant . Fundação de Amparo à Pesquisa do Estado de Minas Gerais (FAPEMIG) grant .
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Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) Monoclinic, Triclinic, OPLAU. DOI: 10.1107/S2056989018015438/is5501sup1.cif
Supporting information file. DOI: 10.1107/S2056989018015438/is5501Monoclinicsup2.cml
Additional supporting information: crystallographic information; 3D view; checkCIF report





