Table 1. Comparison of common genetic diversity measures among B. dendrobatidis lineages.

Total segregating sites for each lineage include all segregating sites where genotype calls were made in at least half of the isolates. Average pairwise-segregating sites are the average numbers of sites with different genotypes between all pairs of isolates within a lineage. Total homozygous segregating sites include all sites within a lineage where there is at least one homozygous difference between isolates. Average pairwise-homozygous segregating sites are the average numbers of sites with different homozygous genotypes between all pairs of isolates within a lineage. Nucleotide diversity (π) is the mean of the per-site nucleotide diversity. Tajima’s D is reported as the mean over 1-kbp bins.

Lineage	Number of isolates	Total segregating sites	Average pairwise-segregating sites	Total homozygous segregating sites	Average pairwise-homozygous segregating sites	π	Tajima’s D
BdASIA-1	8	327,996	142,437	108,353	21,716	0.0044	0.2540
BdASIA-2/BdBRAZIL	12	148,021	51,069	48,722	6,216	0.0018	0.9825
BdCAPE	24	146,466	38,881	53,884	4,977	0.0016	0.3143
BdGPL	187	127,770	26,546	68,493	3,101	0.0009	0.9792