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. Author manuscript; available in PMC: 2019 Oct 2.
Published in final edited form as: Structure. 2018 Aug 16;26(10):1337–1345.e3. doi: 10.1016/j.str.2018.07.005

Table 2.

Crystallographic data collection and refinement statistics

Protein R503Q R515L R515Q R515W G6P complex
Space Group P41212 P41212 P41212 P41212 P41212
Unit cell 172.1 172.1 171.3 171.3 174.0 174.0 172.3 172.3 171.9 171.9
parameters (Å) 99.8 99.4 99.5 99.4 99.4
Resolution (Å) 60.95 (1.95) 60.68 (2.20) 61.5 (2.60) 60.93 (1.75) 60.82 (2.30)
Observations 1557274 (74492) 893507 (42745) 660415 (62010) 2043537 (59107) 878402 (37536)
Unique 108994 (5314) 75286 (4379) 47453 (4566) 150294 (6946) 64976 (3790)
reflections
Rmerge (I) 0.14 (1.902) 0.279 (2.141) 0.185 (1.846) 0.089 (1.58) 0.160 (1.774)
Rpim (I) 0.038 (0.526) 0.084 (0.72) 0.052 (0.518) 0.025 (0.561) 0.045 (0.573)
Mean I/σ(I) 15.1 (1.5) 9.8 (1.2) 15.2 (1.4) 20.1 (1.1) 14.8 (1.3)
CC1/2 0.999 (0.709) 0.997 (0.693) 0.998 (0.796) 0.999 (0.595) 0.998 (0.656)
Completeness (%) 100.0 (99.9) 100.0 (99.9) 100.0 (100.0) 99.7 (93.6) 97.8 (82.6)
Multiplicity 14.3 (14) 11.9 (9.8) 13.9 (13.6) 13.6 (8.5) 13.5 (9.9)
No. of protein residues 1126 1128 1124 1125 1128
No. of atoms 9725 9316 8281 9898 9259
No. of sulfate ions 18 6 13 5 0
No. of water molecules 949 635 91 1180 571
Rcryst 0.1693 0.1897 0.2386 0.1652 0.1674
Rfree 0.2129 0.2507 0.2954 0.1909 0.2263
RMSD bond lengths (Å) 0.007 0.007 0.010 0.006 0.007
RMSD bond angles (°) 0.812 0.853 1.384 0.783 0.894
Ramachandran
Plot
 Favored (%) 98.03 96.44 96.78 98.21 96.80
 Outliers (%) 0.18 0.18 0.63 0.09 0.18
MOLPROBITY 98 98 98 99 99
score (%-tile)
Average B (Å2) 41.82 52.17 71.27 32.07 41.11
Protein 40.57 52.03 70.94 30.31 40.89
Water 45.53 50.04 52.38 42.13 42.48
Sulfate ions 112.54/18 108.43/6 129.77/13 67.15/5 -
(<B>/#)
Glucose 6-P - - - - 79.21/2
(<B>/#)
Coordinate 0.197 0.295 0.454 0.211 0.270
Error (Å)
PDB code 5VG7 5VEC 5VIN 5VBI 6BJ0

Values for the outer resolution shell of data are given in parentheses.

a

Ramachandran plots generated with Molprobity via the PDB validation server.

b

Maximum likelihood-based coordinate error estimate reported by PHENIX.