Table 1. Power/type-I error of various implementations of the statistic.
Input | Proportion-of-lineages estimator | Waiting-time estimator | Lineages-remaining estimator | ||||
---|---|---|---|---|---|---|---|
distribution | Permutation distribution | distribution | Permutation distribution | distribution | Permutation distribution | ||
Neutral | True trees | 0.053 | 0.054 | 0.030 | 0.060 | 0.061 | 0.064 |
RENT+ | 0.17 | 0.08 | 0.31 | 0.04 | 0.11 | 0.09 | |
Selection, 0.02 coalescent units ago–now | True trees | 1 | 1 | 0.033 | 0.060 | 0.194 | 0.222 |
RENT+ | — | 0.87 | — | 0.05 | — | 0.15 | |
Selection, 0.04–0.02 coalescent units ago | True trees | 0.969 | 0.954 | 0.035 | 0.065 | 0.058 | 0.084 |
RENT+ | — | 0.37 | — | 0.08 | — | 0.02 |
Power/type-I error (at the 0.05 level) of various implementations of the statistic in the simulations shown in Figure 4 and Figure 5, with 200 chromosomes sampled in the present. Power is not shown for methods with type-I error rates was computed using allele-frequency estimates coalescent units before the present.