Table 4.
Seventeen OTUs from microorganisms at the species level were identified based on DNA samples extracted using all three methods
| Name | CLU reads | CLU ratio (%) | ZBC reads | ZBC ratio (%) | QIA reads | QIA ratio (%) |
|---|---|---|---|---|---|---|
| Aeromonas sharmana | 0 | 0 | 0 | 0 | 1 | 0 |
| Aeromonas hydrophila | 0 | 0 | 0 | 0 | 4 | 0.01 |
| Aeromonas veronii | 13 | 0.06 | 24 | 0.07 | 48 | 0.12 |
| Aeromonas caviae | 0 | 0 | 1 | 0 | 0 | 0 |
| Anaerorhabdus furcosa | 1 | 0 | 0 | 0 | 0 | 0 |
| Bacillus aryabhattai | 1 | 0 | 0 | 0 | 0 | 0 |
| Bacillus horikoshii | 2 | 0.01 | 0 | 0 | 0 | 0 |
| Cellulomonas gelida | 1 | 0 | 0 | 0 | 0 | 0 |
| Chitinilyticum aquatile | 36 | 0.15 | 32 | 0.1 | 6 | 0.02 |
| Deefgea chitinilytica | 2 | 0.01 | 1 | 0 | 1 | 0 |
| Flavobacterium tilapiae | 1 | 0 | 0 | 0 | 0 | 0 |
| Pseudomonas mosselii | 0 | 0 | 0 | 0 | 1 | 0 |
| Pasteurella pneumotropica | 9 | 0.04 | 0 | 0 | 2 | 0.01 |
| Rhodococcus zopfii | 0 | 0 | 0 | 0 | 1 | 0 |
| Vibrio cholerae | 4,026 | 17.33 | 1587 | 4.89 | 3,669 | 9.44 |
| Vibrio vulnificus | 4 | 0.02 | 3 | 0.01 | 0 | 0 |
| Vibrio lentus | 47 | 0.2 | 0 | 0 | 0 | 0 |
The CLU, ZBC or QIA reads represent the read number of microorganisms identified in DNA extracted using the CLU, ZBC or QIA methods, respectively. The CLU, ZBC or QIA ratio represent the ratio of sequencing reads from microorganisms identified in DNA extracted using the CLU, ZBC or QIA methods, respectively.