Table 1.
Twelve most prevalent bacteriophage sequences in mink fecal samples based on bacterial host
| Phage group | % of total phage sequences (109,612) | Species detected | Top 3 most prevalent species | Average identity (%) | Accession | Family |
|---|---|---|---|---|---|---|
| Escherichia phage | 16 | 228 | Enterobacteria phage phiEcoM‐GJ1 | 85 | EF460875 | Myoviridae |
| Enterobacteria phage RTP | 84 | AM156909 | Siphoviridae | |||
| Enterobacteria phage vB_EcoS_NBD2 | 72 | KX130668 | Siphoviridae | |||
| Enterococcus phage | 11 | 44 | Enterococcus phage EFDG1 | 87 | KP339049 | Myoviridae |
| Enterococcus phage IME_EF3 | 84 | KF728385.2 | Siphoviridae | |||
| Enterococcus phage VD13 | 86 | KJ094032.2 | Siphoviridae | |||
| Bacillus phage | 7 | 94 | Bacillus phage B103 | 69 | X99260 | Podoviridae |
| Bacillus phage BCJA1c | 71 | AY616446 | Siphoviridae | |||
| Bacillus phage vB_BhaS‐171 | 69 | KU160496 | Siphoviridae | |||
| Staphylococcus phage | 6 | 121 | Staphylococcus phage 6ec | 72 | KJ804259 | Siphoviridae |
| Staphylococcus phage vB_SepS_SEP9 | 72 | KF929199 | Siphoviridae | |||
| Staphylococcus phage Stau2 | 71 | KP881332 | Myoviridae | |||
| Lactococcus phage | 6 | 83 | Lactococcus phage Tuc2009 | 71 | AF109874.2 | Siphoviridae |
| Lactococcus phage 1706 | 69 | EU081845 | Siphoviridae | |||
| Lactococcus phage GE1 | 72 | KT339177 | Siphoviridae | |||
| Pseudomonas phage | 4 | 105 | Pseudomonas phage Pf3 | 70 | M11912 | Inoviridae |
| Pseudomonas phage vB_PsyM_KIL1 | 73 | KU130126 | Myoviridae | |||
| Pseudomonas phage JBD44 | 71 | KU199710 | Siphoviridae | |||
| Streptococcus phage | 4 | 86 | Streptococcus phage phiARI0923 | 70 | KT337370 | Siphoviridae |
| Streptococcus phage SpSL1 | 72 | KM882824 | Siphoviridae | |||
| Streptococcus virus 9872 | 71 | KU678390 | Siphoviridae | |||
| Salmonella phage | 4 | 80 | Salmonella phage 9NA | 69 | KJ802832 | Podoviridae |
| Salmonella phage 64795_sal3 | 86 | KX017520 | Siphoviridae | |||
| Salmonella phage IME207 | 84 | KX523699.2 | Siphoviridae | |||
| Clostridium phage | 3 | 51 | Clostridium phage 39‐O | 89 | EU588980 | Siphoviridae |
| Clostridium phage c‐st | 74 | AP008983 | Myoviridae | |||
| Clostridium phage phiCT19406C | 72 | KM983332 | Siphoviridae | |||
| Lactobacillus phage | 3 | 45 | Lactobacillus phage phiJL‐1 | 72 | AY236756 | Siphoviridae |
| Lactobacillus phage AQ113 | 69 | HE956704 | Myoviridae | |||
| Lactobacillus phage PLE3 | 76 | KU848186 | Siphoviridae | |||
| Proteus phage | 2 | 9 | Proteus phage PM 75 | 88 | KM819694 | Podoviridae |
| Proteus phage PM16 | 64 | KF319020 | Podoviridae | |||
| Proteus phage vB_PmiM_Pm5461 | 75 | KP890823 | Myoviridae | |||
| Shigella phage | 2 | 21 | Shigella phage pSf‐1 | 84 | KC710998 | Siphoviridae |
| Shigella phage pSf‐2 | 88 | KP085586 | Siphoviridae | |||
| Shigella phage SP18 | 94 | GQ981382 | Myoviridae |
The top three most prevalent phage species from each phage group and their respective life cycles are listed.