Table 1. Taxonomy assignments of S. pseudintermedius isolate.
Taxonomic assignments were obtained i) using WIMP workflow with NCBI RefSeq database; ii) Minimap2 with rrn DB; and iii) Minimap2 with rrn DB including S. pseudintermedius.
| WIMP (NCBI RefSeq
DB) |
Minimap2 ( rrn DB) | Minimap2 (
rrn DB +
S. pseudintermedius) |
||||
|---|---|---|---|---|---|---|
| Taxonomy | 16S | 16S-ITS-23S | 16S | 16S-ITS-23S | 16S | 16S-ITS-23S |
|
Staphylococcus
pseudintermedius |
68.1% | 97.6% | - | - | 97.9% | 97.5% |
| Staphylococcus sp | 13.1% | 0.3% | - | - | - | - |
| Staphylococcus schleiferi * | 2.2% | 0.3% | 94.9% | 82.1% | 1.94% | 2.2% |
| Staphylococcus aureus * | 3.2% | 0.2% | 0.0% | 0.0% | 0.0% | 0.0% |
| Staphylococcus lutrae * | 2.7% | 0.1% | - | - | - | - |
| Staphylococcus hyicus * | 0.3% | 0.1% | 3.2% | 8.2% | 0.0% | 0.2% |
| Staphylococcus agnetis * | 0.2% | 0.0% | 1.6% | 9.7% | 0.0% | 0.1% |
| Other Staphylococcus * | 3.7% | 1.4% | 0.3% | 0.0% | 0.2% | - |
| Other species * | 6.5% | 0.1% | - | - | - | - |
*Incorrect bacterial species assignment