Table 1. CD8+ T-cell epitope selection for NY-ESO-1, MAGE-A3 and MAGE-A10 .
HLA class I | IEDB | Position | Length | Method | ic50 score | Percentile rank | E-total (kJ/mol) | Published |
NY-ESO-1 | ||||||||
A*02:01 | SLLMWITQC | 157-165 | 9 | ann | 32.98 | 0.1 | -540.1 | Yes 34 |
A*30:01 | AARASGPGG | 50-58 | 9 | ann | 21.2 | 0.1 | -559.95 | No |
A*32:01 | RLLEFYLAMP | 86-98 | 10 | ann/smm | 36.08 | 0.5 | -418.27 | No |
B*07:02 | TPMEAELARR | 98-109 | 10 | ann | 11.90 | 0.1 | -490.14 | No |
B*40:02 | KEFTVSGNI | 124-132 | 9 | ann | 34.4 | 0.2 | -552.45 | No |
B*40:02 | RLLEFYLAMP | 85-98 | 10 | ann | 17.0 | 0.2 | -539.32 | YES 35 |
B*55:01 | MPFATPMEA | 94-102 | 9 | ann | 23.70 | 0.2 | -419.10 | No |
MAGE-A3 | ||||||||
A*02:01 | KVAELVHFL | 112-120 | 9 | ann | 0.1 | 45.93 | -374.92 | Yes 36 |
A*02:01 | FLWGPRALV | 271-279 | 9 | ann | 0.1 | 12.02 | -591.74 | Yes 37 |
A*24:02 | IMPKAGLLI | 195-203 | 9 | ann | 0.1 | - | -529.78 | Yes 38 |
A*01:01 | ELMEVDPIGHL | 165-174 | 9 | ann | 0.1 | 34.74 | -648.0 | No |
A*03:01 | RKVAELVHFLL | 111-122 | 10 | ann | 0.1 | 46.43 | -457.78 | No |
A*02:06 | GSVVGNWQYF | 137-148 | 10 | ann | 0.1 | 45.46 | -486.05 | No |
MAGE-A10 | ||||||||
A*01:01 | KLLTQDWVQ | 269-280 | 9 | ann | 44.11 | 0.1 | -489.12 | No |
A*01:01 | NGSDPRSFPL | 319-330 | 10 | ann | 54.21 | 0.1 | -552.37 | No |
A*02:01 | SLLKFLAKV | 310-318 | 9 | ann | 8.90 | 0.4 | -663.25 | Yes 39 |
A*02:01 | GLYDGMEHL | 254-262 | 9 | ann | 9.09 | 0.8 | -432.16 | Yes 39 |
A*03:01 | LLFKYQMKE | 145-153 | 9 | ann | 47.96 | 0.1 | -664.36 | No |
A*03:01 | RAHAEIRKMS | 301-313 | 10 | ann | 54.20 | 0.1 | -699.67 | No |
A*11:01 | MLSDVQSMPK | 214-223 | 10 | ann | 12.72 | 0.2 | -533.53 | No |
A*31:01 | KFLAKVNGSD | 313-324 | 10 | ann | 39.87 | 0.1 | -502.90 | No |
A*31:01 | RSFPLWYEEA | 324-335 | 10 | ann | 29.13 | 0.1 | -551.39 | No |
A*31:01 | VIWEALNMMG | 245-256 | 10 | ann | 53.0 | 0.2 | -438.42 | No |
* Selected as the highest peptide binding affinity.
The selected sequences are shown in bold.