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. 2018 Jul 2;9(1):45–56. doi: 10.15171/bi.2019.06

Table 1. CD8+ T-cell epitope selection for NY-ESO-1, MAGE-A3 and MAGE-A10 .

HLA class I IEDB Position Length Method ic50 score Percentile rank E-total (kJ/mol) Published
NY-ESO-1
A*02:01 SLLMWITQC 157-165 9 ann 32.98 0.1 -540.1 Yes 34
A*30:01 AARASGPGG 50-58 9 ann 21.2 0.1 -559.95 No
A*32:01 RLLEFYLAMP 86-98 10 ann/smm 36.08 0.5 -418.27 No
B*07:02 TPMEAELARR 98-109 10 ann 11.90 0.1 -490.14 No
B*40:02 KEFTVSGNI 124-132 9 ann 34.4 0.2 -552.45 No
B*40:02 RLLEFYLAMP 85-98 10 ann 17.0 0.2 -539.32 YES 35
B*55:01 MPFATPMEA 94-102 9 ann 23.70 0.2 -419.10 No
MAGE-A3
A*02:01 KVAELVHFL 112-120 9 ann 0.1 45.93 -374.92 Yes 36
A*02:01 FLWGPRALV 271-279 9 ann 0.1 12.02 -591.74 Yes 37
A*24:02 IMPKAGLLI 195-203 9 ann 0.1 - -529.78 Yes 38
A*01:01 ELMEVDPIGHL 165-174 9 ann 0.1 34.74 -648.0 No
A*03:01 RKVAELVHFLL 111-122 10 ann 0.1 46.43 -457.78 No
A*02:06 GSVVGNWQYF 137-148 10 ann 0.1 45.46 -486.05 No
MAGE-A10
A*01:01 KLLTQDWVQ 269-280 9 ann 44.11 0.1 -489.12 No
A*01:01 NGSDPRSFPL 319-330 10 ann 54.21 0.1 -552.37 No
A*02:01 SLLKFLAKV 310-318 9 ann 8.90 0.4 -663.25 Yes 39
A*02:01 GLYDGMEHL 254-262 9 ann 9.09 0.8 -432.16 Yes 39
A*03:01 LLFKYQMKE 145-153 9 ann 47.96 0.1 -664.36 No
A*03:01 RAHAEIRKMS 301-313 10 ann 54.20 0.1 -699.67 No
A*11:01 MLSDVQSMPK 214-223 10 ann 12.72 0.2 -533.53 No
A*31:01 KFLAKVNGSD 313-324 10 ann 39.87 0.1 -502.90 No
A*31:01 RSFPLWYEEA 324-335 10 ann 29.13 0.1 -551.39 No
A*31:01 VIWEALNMMG 245-256 10 ann 53.0 0.2 -438.42 No

* Selected as the highest peptide binding affinity.

The selected sequences are shown in bold.