(A) L1 immunohistochemistry on P0 brain sections from Dag1F/+;Sox2Cre controls (n = 3 animals) labels descending CTAs and ascending TCAs in the internal capsule. In Dag1F/-;Sox2Cre (n = 4 animals) (B) and IspdL79*/L79* (n = 5 animals) (C) mutants, the internal capsule is highly disorganized, with axons projecting into the upper layers of the cortex (red arrows), forming ectopic bundles in the ventral telencephalon (red asterisks), and abnormal projections extending ventrally (red arrowheads). High magnification insets show L1 +axons in the intermediate zone of the cortex of controls (A’) and ectopic axonal projections into the upper cortical layers in Dag1F/-;Sox2Cre (B’) and IspdL79*/L79* (C’) mutants. DiI injection in the thalamus of Dag1F/+;Sox2Cre controls (n = 4 animals) labels TCAs as they cross the DTB, extend through the ventral telencephalon, across the PSPB, and into the intermediate zone of the cortex. In Dag1F/-;Sox2Cre (n = 4 animals) (E) and IspdL79*/L79* (n = 4 animals) (F) mutants, TCAs fail to cross the DTB, and instead project ventrally out of the diencephalon. High magnification insets show DiI-labeled TCAs extending into the intermediate zone of the cortex of controls (D’), and a lack of labeled TCAs in the cortex of Dag1F/-;Sox2Cre (E’) and IspdL79*/L79* (F’) mutants. DiI injection in the cortex of Dag1F/+;Sox2Cre controls (n = 3 animals) labels CTAs as they extend across the PSPB, through the ventral telencephalon, and across the DTB into the thalamus. CTAs in Dag1F/-;Sox2Cre (n = 4 animals) (H) and IspdL79*/L79* (n = 5 animals) (I) mutants fail to cross the PSPB or take abnormal trajectories through the ventral telencephalon. High magnification insets show DiI-labeled CTAs extending into the thalamus in controls (G’), and a lack of labeled CTAs in the thalamus of Dag1F/-;Sox2Cre (I’) and IspdL79*/L79* (F’) mutants. (J–L) Schematic summarizing CTA (brown) and TCA (blue) axon trajectories in controls (J), Dag1F/-;Sox2Cre (K) and IspdL79*/L79* (L). Scale bar = 500 μm.