The physiological functions of the atypical mitogen-activated protein kinase extracellular signal-regulated kinase 3 (ERK3) remain poorly characterized. Previous analysis of mice with a targeted insertion of the lacZ reporter in the Mapk6 locus (Mapk6lacZ) showed that inactivation of ERK3 in Mapk6lacZ mice leads to perinatal lethality associated with intrauterine growth restriction, defective lung maturation, and neuromuscular anomalies.
KEYWORDS: ERK3, MAP kinases, mouse models, protein kinases, signal transduction
ABSTRACT
The physiological functions of the atypical mitogen-activated protein kinase extracellular signal-regulated kinase 3 (ERK3) remain poorly characterized. Previous analysis of mice with a targeted insertion of the lacZ reporter in the Mapk6 locus (Mapk6lacZ) showed that inactivation of ERK3 in Mapk6lacZ mice leads to perinatal lethality associated with intrauterine growth restriction, defective lung maturation, and neuromuscular anomalies. To further explore the role of ERK3 in physiology and disease, we generated novel mouse models expressing a catalytically inactive (Mapk6KD) or conditional (Mapk6Δ) allele of ERK3. Surprisingly, we found that mice devoid of ERK3 kinase activity or expression survive the perinatal period without any observable lung or neuromuscular phenotype. ERK3 mutant mice reached adulthood, were fertile, and showed no apparent health problem. However, analysis of growth curves revealed that ERK3 kinase activity is necessary for optimal postnatal growth. To gain insight into the genetic basis underlying the discrepancy in phenotypes of different Mapk6 mutant mouse models, we analyzed the regulation of genes flanking the Mapk6 locus by quantitative PCR. We found that the expression of several Mapk6 neighboring genes is deregulated in Mapk6lacZ mice but not in Mapk6KD or Mapk6Δ mutant mice. Our genetic analysis suggests that off-target effects of the targeting construct on local gene expression are responsible for the perinatal lethality phenotype of Mapk6lacZ mutant mice.
INTRODUCTION
Extracellular signal-regulated kinase 3 (ERK3) and ERK4 are atypical members of the mitogen-activated protein (MAP) kinase family (1). Despite their identification more than 25 years ago, very little is known about their physiological functions. The ERK3 gene (MAPK6 in human) is expressed ubiquitously in adult mammalian tissues, while the ERK4 gene (MAPK4) shows a restricted expression profile, being detected mainly in brain tissue (2–4; www.gtexportal.org/home). During mouse embryogenesis, ERK3 mRNA and protein levels peak around embryonic day 11, after the onset of organogenesis, and then decline thereafter (3). Expression of ERK3 is also upregulated during in vitro differentiation of cell line models along the neuronal or muscle lineage (2, 5). These early observations have suggested a role for ERK3 signaling in cell differentiation and tissue development.
Analogous to classical MAP kinases, ERK3 is activated by phosphorylation of the activation loop, which stimulates its intrinsic catalytic activity and affinity for the substrate MK5 (6). Activation loop phosphorylation is mediated by group I p21-activated kinases (7, 8) and is reversed by the action of the MAP kinase phosphatase DUSP2 (9). Of note, it has been previously proposed that ERK3 enzymatic activity is dispensable for MK5 activation and that ERK3 exerts a scaffolding function (10). However, other experiments using coupled in vitro kinase assays did not suppport this hypothesis (6, 11). A more recent study reported that overexpression of ERK3 induces rounding of MDA-MB-231 breast cancer cells by an unknown mechanism independent of its kinase activity (12). The physiological importance of catalytic and noncatalytic functions of ERK3 remains an open question.
To investigate the physiological roles of ERK3, we have disrupted the Mapk6 gene in the mouse by inserting a reporter lacZ gene in-frame with the ATG initiation codon in exon 2 (13). We found that loss of ERK3 function in Mapk6lacZ homozygous mice leads to intrauterine growth restriction, delayed lung maturation associated with defective type II pneumocyte differentiation, and neuromuscular anomalies. About 40% of Mapk6lacZ mutant mice died rapidly following delivery from respiratory distress syndrome. The other 60% of Mapk6lacZ pups survived the immediate neonatal interval but subsequently died within 24 h from an unclear cause. These newborn mice were unable to feed and displayed symptoms of muscular weakness. All mice exhibited kyphosis and carpoptosis phenotypes. The perinatal lethality of Mapk6lacZ mutant mice has precluded the analysis of ERK3 functions in postnatal development and growth.
Here, we report on the generation of two novel genetically engineered mouse models to address the importance of ERK3 catalytic activity and to study the role of ERK3 in postnatal development. We found that mice expressing a catalytically inactive allele of ERK3 are born at normal Mendelian ratios and do not exhibit signs of respiratory distress or neuromuscular problems. Surprisingly, mice with a conditional disruption of the ERK3 gene also survived to adulthood, demonstrating that ERK3 expression and activity are dispensable for postnatal survival. However, we found that ERK3 catalytic activity is required for optimal postnatal growth in mice.
RESULTS AND DISCUSSION
Mice expressing a catalytically inactive ERK3 mutant survive to adulthood and are fertile.
To address the physiological importance of ERK3 catalytic activity, we used a genetic approach to generate a mouse mutant bearing a kinase-dead (KD) allele of ERK3. To minimize disruption of the gene sequence, we have constructed a knock-in targeting vector that, upon homologous recombination, introduces the double mutation K49A/K50A in exon 2 of the Mapk6 gene (Fig. 1A). Lys49 is part of the AXK motif in the β3 strand of the kinase domain N-lobe that bridges to the conserved Glu65 in the C-helix to anchor the α and β phosphates of ATP. The Lys-Glu salt bridge is considered a signature of the active kinase conformation and is essential for catalysis (14). To make sure that Lys50 could not substitute for Lys49, we also mutated this residue (Fig. 1B). As predicted, the K49A/K50A mutation abolishes ERK3 kinase activity in vitro (6). The targeting vector was electroporated in embryonic stem (ES) cells, and two correctly targeted clones were identified by Southern blot analysis (Fig. 1C). One clone was injected in blastocysts to generate chimeric mice and was shown to transmit the Mapk6KD allele to the germ line.
FIG 1.
Generation of mice expressing kinase-dead ERK3. (A) Schematic representation of the gene targeting strategy used to generate a catalytically inactive knock-in allele of Mapk6. The targeting vector harbors a neomycin resistance gene (neor) and DNA mutations that replace lysines 49 and 50 with alanine residues in exon 2 of the Mapk6 coding sequence. Exons 2 to 6 and restriction sites are shown (E, EcoRI; K, KpnI; S, ScaI). Open boxes correspond to untranslated regions (UTRs), and closed boxes indicate coding regions. Black triangles correspond to loxP sites. (B) Nucleotide and amino acid sequences of codons 49 and 50 in the kinase domain of wild-type and kinase-dead ERK3 protein. (C, upper) Southern blot analysis of EcoRI-digested genomic DNA with probe A showing two correctly targeted ES clones with wild-type (9.1 kb) and mutant (6.8 kb) alleles. (Lower) Southern blot analysis of ScaI-digested genomic DNA with probe B showing the expected 9.5-kb recombinant band. (D) PCR analysis of a litter from a Mapk6KD/+ heterozygous cross at weaning. (E) Immunoblot analysis of ERK3 protein expression in lysates prepared from brain and skeletal muscle of wild-type and ERK3KD/KD adult mice. (F) Chromatograms of genomic DNA sequences from Mapk6+/+ and Mapk6KD/KD mice confirming the mutation of lysines 49 and 50 to alanines in exon 2 of the Mapk6 gene.
Analysis of heterozygous Mapk6KD/+ mouse intercrosses revealed the presence of viable Mapk6KD/KD homozygous mice at the time of weaning (Fig. 1D). The mutant mice appeared healthy and showed no gross anatomical abnormality. Genotypes of offspring were distributed according to normal Mendelian inheritance (Table 1). Mapk6KD/KD mice survived to adulthood, were fertile, and remained generally healthy. We confirmed that ERK3 wild-type and KD proteins are expressed at similar levels in mouse tissues (Fig. 1E). Importantly, we further validated by DNA sequence analysis that Mapk6KD/KD mice express the Mapk6KD allele (Fig. 1F).
TABLE 1.
Genotypic analysis of offspring from Mapk6KD/+ intercrossesa
| Stage | Total no. of pups | Genotype (%; +/+:KD/+:KD/KD) |
|---|---|---|
| E18.5 | 136 | 27.2:47.8:25 |
| Adult | 192 | 25.5:53.7:20.8 |
Mixed C57BL/6J-129/Sv genetic background.
ERK3 expression is dispensable for perinatal survival.
The perinatal lethality of Mapk6lacZ mutant mice has precluded an analysis of the role of ERK3 in postnatal development and adult physiology. To circumvent this problem, we have generated a conditional allele of Mapk6 by flanking exon 3 of the gene with loxP sites (Fig. 2A). Two correctly targeted ES clone were identified (Fig. 2B) from which a single clone produced chimeric mice that could transmit the floxed allele to the germ line. Deletion of exon 3 in the kinase domain is predicted to disrupt the kinase fold and introduce a frameshift to yield a null allele. To validate that we had created a conditional null allele of Mapk6, we crossed Mapk6flox/flox mice to Sox2-Cre transgenic mice to inactivate Mapk6 in the epiblast and resulting embryo. Immunoblot analysis of embryonic day 12.5 (E12.5) embryos confirmed the absence of ERK3 protein in Mapk6Δ/Δ (Δ symbolizes the Cre-excised allele) homozygous embryos (Fig. 2C).
FIG 2.
Generation of mice expressing a conditional Mapk6 allele. (A) Schematic representation of the Mapk6 locus, targeting vector, recombinant conditional allele, and conditional deleted allele. The targeting vector carries a neomycin resistance cassette (neor) flanked by two FRT sites, and exon 3 is flanked by two loxP sites. Exons 2 to 5 and restriction sites are shown (N, NheI; N, NotI; S, SfiI). Open boxes correspond to UTRs, and closed boxes indicate coding regions. White and black triangles correspond to loxP and FRT sites, respectively. (B) Southern blot analysis of SfiI-digested genomic DNA showing two correctly targeted ES clones. Wild-type (16 kb) and targeted mutant (12 kb) alleles are indicated. (C) Immunoblot analysis of ERK3 protein expression in lysates prepared from wild-type (+/+), heterozygous Mapk6Δ/+ (Δ/+), and Mapk6Δ/Δ (Δ/Δ) E12.5 embryos. (D) Immunoblot analysis of ERK3 protein expression in lysates prepared from different tissues of Mapk6Δ/+ and Mapk6Δ/Δ adult mice.
To verify that the Cre-excised Mapk6Δ allele behaves like the Mapk6lacZ null allele, we intercrossed Mapk6Δ/+ mice. Surprisingly, we observed that ERK3-deficient Mapk6Δ/Δ mice are born at the expected Mendelian frequency (Table 2) and survive to adulthood without any apparent health issues. Immunoblot analysis of various tissues isolated from adult Mapk6Δ/Δ mice confirmed the absence of ERK3 expression in all tissues examined (Fig. 2D). Mapk6Δ/Δ mice were further shown to be fertile. We conclude that ERK3 expression is dispensable to survive the perinatal period.
TABLE 2.
Genotypic analysis of offspring from Mapk6Δ/+ intercrossesa
| Stage | Total no. of pups | Genotype (%; +/+:Δ/+:Δ/Δ) |
|---|---|---|
| E18.5 | 115 | 29.6:51.3:19.1 |
| Adult | 110 | 23.6:55.5:20.9 |
Mixed C57BL/6J-129/Sv genetic background.
Phenotypic analysis of Mapk6KD/KD and Mapk6Δ/Δ mutant mice.
Homozygous Mapk6lacZ mutant mice display an intrauterine growth restriction phenotype, which is associated with adverse perinatal outcome (13). In contrast, we did not observe any decrease in the body weight of heterozygous or homozygous Mapk6KD and Mapk6Δ E18.5 embryos compared to that of wild-type littermates, consistent with their perinatal survival (Fig. 3A to C). We also reported that Mapk6lacZ/lacZ mutant mice exhibit a lung maturation defect characterized by decreased saccular space and the persistence of type II pneumocytes with high glycogen content (13). Histological examination of the lungs of Mapk6KD/KD and Mapk6Δ/Δ mutant E18.5 embryos revealed a normal lung architecture with the saccular space comparable to that of wild-type animals (Fig. 3D). Mapk6KD/KD and Mapk6Δ/Δ mutant E18.5 embryos appeared morphologically normal and did not exhibit the smaller size and carpoptosis (wrist drop) phenotypes of Mapk6lacZ/lacZ mutant mice (Fig. 3E). These results argue that the phenotypes of Mapk6lacZ homozygous mutant mice originally reported are not a direct consequence of the loss of ERK3 activity or expression but rather reflect an off-target effect of the targeting construct.
FIG 3.
Phenotypic analysis of Mapk6KD/KD and Mapk6Δ/Δ E18.5 embryos. (A to C) Body weight distribution of E18.5 embryos from Mapk6lacZ/+ (A), Mapk6 KD/+ (B), and Mapk6Δ/+ intercrosses. *, P < 0.05; ***, P < 0.001 (unpaired Student's t test). (D, left) Representative photographs of H/E staining of lung sections from E18.5 embryos of the indicated wild-type or mutant Mapk6 genotype. Scale bar, 250 µm. (Right) Saccular space quantification of E18.5 lungs from Mapk6 KD/+ (n ≥ 6) or Mapk6Δ/+ (n = 4) intercrosses. Results are expressed as means ± standard errors of the means (SEM). AU, arbitrary units. (E) Representative images of E18.5 embryos of the indicated wild-type or mutant Mapk6 genotype. Arrows point to the wrists and show carpoptosis, which is present exclusively in Mapk6lacZ/lacZ embryos.
Targeted insertion of the Mapk6lacZ construct influences neighboring gene expression.
Insertion of foreign DNA fragments into the genome may have unintended effects on the expression and function of neighboring genes. In a recent study, West et al. (15) used transcriptome sequencing to analyze in a systematic manner the transcriptional impact of targeted mouse mutations on local changes in gene expression. They measured the expression levels of genes within 500 kb upstream or downstream of the targeted gene in tissues from 44 homozygous mutants generated by the International Knockout Mouse Consortium (16) compared with C57BL/6N inbred control mice. The targeting strategies insert a bacterial beta-galactosidase reporter (lacZ gene) downstream of the target gene endogenous promoter and a neomycin resistance selection cassette, similar to the strategy used to produce Mapk6lacZ mutant mice. The authors found that one or more neighboring genes are downregulated or upregulated in up to 59% of the mouse mutants, depending on the targeting approach (15). Various mechanisms have been proposed to explain this local transcriptional dysregulation, including disruption of regulatory and insulating elements with cis-acting consequences and effects of the exogenous neor promoter on expression of 3′ genes.
The impact of local changes in gene expression on the phenotypic spectrum of targeted mouse mutants has not been thoroughly studied. However, an accumulating number of reports indicate that some phenotypes associated with a targeted gene mutation are causally related to off-target effects on neighboring genes (17–21). For example, mice with a homozygous disruption of the Ampd1 gene generated by a targeted trap mutation (knockout-first allele) die within 2 days postnatally and show reduced body weight, decreased lung saccular space, and lack of milk in their stomach (20). However, after removal of the knockout-first cassette containing the lacz and neor genes to generate a conditional allele and further deletion of exon 3 of the Ampd1 gene to produce a null allele, homozygous mutant mice survived to adulthood. RNA-seq analysis revealed that expression of the neighboring Man1a2 and Nras genes was downregulated in the knockout-first Ampd1 mice but not in the conditional Ampd1 mutant mice. Another recent study reported that replacement of the coding region of the steroid metabolizing enzyme gene Hsd17b1 with the lacZ gene inserted in the translation initiation site and a neor selection cassette (Hsd17b1-LacZ/Neo mice) results in reduced adipose mass, increased lean mass, and lipid accumulation in the liver of male mice (17). Further characterization revealed that the metabolic phenotype of Hsd17b1-LacZ/Neo mice is caused by the reduced expression of the immediate 5′ gene Naglu, which encodes the N-acetyl-α-glucosaminidase enzyme, and not by a deficiency in HSD17B1 activity. Local changes in gene expression due to vector insertion may also explain the differences in phenotypes observed for multiple null mutants of the same gene (19).
These considerations led us to evaluate the potential impact of the targeted Mapk6lacZ mutation on the transcription of neighboring genes. We first focused on genes within 1 Mb upstream or downstream of the Mapk6 locus on mouse chromosome 9 (Fig. 4A) and quantitatively measured their level of expression by quantitative reverse transcription-PCR (qRT-PCR) in littermate wild-type and Mapk6lacZ homozygous E12.5 embryos. Of the 18 genes found in this interval, 15 were found to be significantly expressed. We observed a global dysregulation of the expression of Mapk6 neighboring genes in Mapk6lacZ/lacZ mutant embryos, with 7 genes being statistically upregulated by more than 50% (Fig. 4B). In contrast, none of the genes was deregulated in Mapk6KD/KD (Fig. 4C) or Mapk6Δ/Δ (Fig. 4D) embryos compared to their respective wild-type littermate controls. We then selected 14 genes associated with embryonic development outside the 1-Mb interval around Mapk6 to determine whether the Mapk6lacZ mutation exerts longer-range transcriptional effects. Notably, we observed that the expression of 5 genes was significantly upregulated in Mapk6lacZ/lacZ embryos compared to that in littermate Mapk6+/+ embryos (Fig. 4E), whereas none of the genes were deregulated in Mapk6KD/KD (Fig. 4F) or Mapk6Δ/Δ (Fig. 4G) mutant embryos. These results indicate that targeted insertion of the Mapk6lacZ construct exerts unintended effects on the regulation of local gene expression.
FIG 4.
Targeted insertion of the Mapk6lacZ construct influences the transcription of neighboring genes. (A) Schematic representation of mouse chromosome 9 and neighboring genes of Mapk6 within a 1-Mb interval. (B to D) Relative mRNA expression of 15 genes within a 1-Mb interval around Mapk6 in E12.5 embryos of wild-type or homozygous Mapk6lacZ/lacZ (B), Mapk6 KD/KD (C), and Mapk6Δ/Δ (D) genotypes. Gene expression was measured by quantitative RT-PCR. Results are expressed as means ± standard deviations (SD). *, P < 0.05 (unpaired Student's t test). (E to G) Relative mRNA expression of 14 developmental genes on mouse chromosome 9 outside 1 Mb from the Mapk6 locus in E12.5 embryos of wild-type or homozygous Mapk6lacZ/lacZ (E), Mapk6 KD/KD (F), and Mapk6Δ/Δ (G) genotypes. Results are expressed as means ± SD. *, P < 0.05 (unpaired Student's t test). (H) Functional enrichment analysis of the 89 genes located within 5 Mb upstream or downstream of the Mapk6 locus on mouse chromosome 9 using Ingenuity Pathway Analysis software. Enrichment of biological functions is expressed as log10 P value.
We next analyzed the enrichment in biological functions for the 89 genes within plus or minus 5 Mb of the Mapk6 locus using Ingenuity Pathway Analysis software (Qiagen) (22). Interestingly, 14 out of 35 significantly enriched biological functions were associated with development or embryogenesis, thereby revealing an enrichment of genes involved in developmental processes in the 10-Mb chromosomal region surrounding the Mapk6 locus (Fig. 4H). We hypothesize that the off-target effects of the Mapk6lacZ construct are responsible for the perinatal lethality phenotype of Mapk6lacZ mutant mice rather than the loss of ERK3 function.
ERK3 activity is required for optimal postnatal growth in mice.
The availability of surviving Mapk6 mutant mice allows us to explore the function of ERK3 in postnatal development. Despite the fact that Mapk6KD/KD and Mapk6Δ/Δ mutant mice have a body weight comparable to that of wild-type mice at birth, we noticed that some mutant mice appear smaller at weaning. To investigate the possible role of ERK3 in postnatal growth, we measured the weight of mouse cohorts of different Mapk6 genotypes from birth through weaning at 3 weeks of age. The growth rate of Mapk6Δ/Δ homozygous mice was clearly reduced compared to that of control Mapk6flox/+ mice and heterozygous Mapk6Δ/flox or Mapk6Δ/+ mice (Fig. 5A). The difference in body weight already reached statistical significance at day 5 and was maintained up to the time of weaning (Fig. 5A and B). A similar phenotype was observed for Mapk6KD/KD mice (Fig. 5C and D). The growth retardation phenotype affected both female and male Mapk6 mutant mice (Fig. 5B and D). These results provide strong evidence that ERK3 kinase activity is necessary for optimal postnatal growth in mice. Future studies will be required to understand the cellular and molecular basis of this complex phenotype and to evaluate its long-term physiopathological impact.
FIG 5.
Impact of the loss of ERK3 activity or expression on postnatal growth in mice. (A) Growth curves of Mapk6flox/+, Mapk6Δ/flox, Mapk6Δ/+, and Mapk6Δ/Δ mice (pooled animals, ≥11) over 15 postnatal days. (B) Analysis of Mapk6+/+, Mapk6Δ/+, and Mapk6Δ/Δ mouse (males, n ≥ 8; females, n ≥ 18) body weight at weaning (day 21). (C) Growth curves of Mapk6+/+, Mapk6KD/+, and Mapk6KD/KD mice (pooled animals, n ≥ 12) over 15 postnatal days. (D) Analysis of Mapk6+/+, Mapk6KD/+, and Mapk6KD/KD mouse (males, n ≥ 8; females, n ≥ 9) body weight at weaning. Results are expressed as means ± SEM. *, P < 0.05; **, P < 0.01 (unpaired Student's t test).
Conclusions.
We have generated two novel genetically engineered models of Mapk6 mutant mice. We show that ERK3 activity and expression are dispensable for perinatal survival, contrary to previous findings obtained from the analysis of Mapk6lacZ mice. We also unveil a novel role of ERK3 kinase activity in regulating postnatal growth. These mouse models will provide valuable tools to study the poorly understood physiological functions of the atypical MAP kinase ERK3. The Mapk6KD mutant mouse will also be useful to genetically validate the selectivity of future small-molecule inhibitors of ERK3. Our findings also emphasize the importance of evaluating the impact of targeted mutant constructs on local gene regulation and, whenever possible, to analyze more than one mouse line harboring different mutant alleles for interpreting the phenotypes associated with mutations in a specific gene.
MATERIALS AND METHODS
Generation of mouse mutants.
To generate mice bearing a catalytically inactive allele of Mapk6, we introduced a mutation in the essential AXK motif of the kinase domain in exon 2 by homologous recombination. Part of exon 2 was amplified by PCR using primers containing a modified DNA sequence to change the sequence coding for lysines 49 and 50 (AAG AAA) to a sequence coding for two alanine residues (GCA GCA). An ScaI restriction site was also introduced to reassemble the mutated exon 2 in a pBluescript II cloning vector. Left and right arms of genomic DNA coding for intronic sequences were PCR amplified and cloned upstream and downstream of the mutated exon 2. A second right arm containing exon 3 was added downstream of the shorter right arm, allowing us to insert an XhoI restriction site in which the neor selection cassette, flanked by loxP sites, was introduced. The targeting vector was linearized and electroporated into G4 mouse ES cells. Recombinant clones were selected with G418 and screened by Southern blot analysis for homologous recombination. One correctly targeted ES cell clone was injected into C57BL/6 blastocyst-stage embryos to produce chimeric mice and was shown to transmit the mutant allele to the germ line.
We generated a conditional Mapk6 allele by flanking the essential exon 3, which encodes kinase subdomains VIII and IX, with loxP sites. Briefly, this was achieved by assembling left- and right-arm genomic fragments containing exon 2 and exons 4 and 5, respectively, with exon 3 by Gibson Assembly (New England Biolabs). An upstream loxP site was inserted in intron 2 upstream of exon 3, and an FLP recombination target (FRT)-flanked neor selection cassette followed by a second loxP site was inserted downstream of the exon. The targeting vector was linearized and electroporated into G4 mouse ES cells. Recombinant clones were screened as described above. A correctly targeted ES cell clone was injected into C57BL/6 blastocyst-stage embryos to produce chimeric mice, and germ line transmission was obtained.
Genotyping and DNA sequencing.
Genomic DNA was extracted using a phenol-chloroform protocol and was subjected to PCR. Mapk6KD/KD genotyping was performed with the following priming sequences: wild-type and kinase-dead allele CTG TTT CTG CCT CCC ATG TG, wild-type allele GAT AGA TTC ATC TAT CTC TCC C, and kinase-dead allele ATT CCA TCA GAA GCT ATA AAC TTC G. For sequencing of the kinase-dead allele, PCR amplifying exon 2 of Mapk6 (priming sequences GCT TTA AGT CTG AGG GGA AC and GCA GAA TGG ATA TAT TTG AG) was first perform, followed by Sanger sequencing using an ABI 3730 DNA analyzer.
Mapk6Δ/Δ genotyping was performed with the following priming sequences: Δ allele, CCT GCC TCC AAA CTG ATA CTG and GAC GTG ATC CAC CTA ATA ACT TCG; exon 3 (wild-type and flox), AAC ACT GAC CTG CAA AGA GG and TCT CTC CCT CAC CTT TCC C; flox allele, ACC ACC AAG CGA AAC ATC G and GAC GTG ATC CAC CTA ATA ACT TCG; wild-type allele, TGC AGG TCA GTG TTG TAT GG and AGT GCT TGA TTT GAA ACA CAG G.
Animal husbandry and experimentation.
Animals were housed under pathogen-free conditions and were handled according to procedures and protocols approved by the Université de Montréal Institutional Animal Care Committee. Male and female mice maintained on a mixed C57BL/6/129/Sv genetic background were used for these studies. For timed matings, pregnant females were sacrificed at gestation day 12.5 or 18.5 by CO2 euthanasia, and embryos were removed by caesarean section. Each embryo was weighed and processed for further analysis.
Histology.
Lungs were fixed in 10% formalin, embedded in paraffin, and sliced in 5-μm thin sections. Tissue sections were mounted on glass slides and stained with hematoxylin-eosin using a standard protocol. Morphometric analysis of lung saccular space was performed using Visiomorph software (Visiopharm). Saccular space was expressed as saccular area/total area.
Immunoblot analysis.
Cell lysis and immunoblotting analysis were performed as described previously (5), using commercial anti-ERK3 (dilution, 1:1,000; Abcam) and anti-HSC70 (dilution, 1:2,000; Santa Cruz Biotechnology) antibodies.
qRT-PCR.
Total RNA was isolated from E12.5 embryos, purified with the RNeasy kit (Qiagen), and reverse transcribed using the Maxima first-strand cDNA synthesis kit with dsDNase (ThermoFisher Scientific). Gene expression was determined using assays designed with the Universal Probe Library from Roche (www.universalprobelibrary.com). For each quantitative PCR (qPCR) assay, a standard curve was performed to ensure that the efficiency of the assay was between 90% and 110%. Target DNA amplification was measured on the Viia7 real-time PCR system (Life Technologies), programmed with an initial step of 20 s at 95°C followed by 40 cycles of 1 s at 95°C and 20 s at 60°C. Relative expression (RQ = 2−▵▵CT) was calculated using ExpressionSuite software (Life Technologies), and normalization was done using both glyceraldehyde-3-phosphate dehydrogenase and β-actin. All primers used for qPCR analysis are listed in Table S1 in the supplemental material.
Supplementary Material
ACKNOWLEDGMENTS
We thank Mélania Gombos for help with animal experimentation, Sébastien Harton for technical support in generating the Mapk6flox mouse line, and Raphaelle Lambert for qPCR analysis.
This work was supported in part by grants from the Canadian Institutes for Health Research to S.M. S.M. held the Canada Research Chair in Cellular Signaling.
Footnotes
Supplemental material for this article may be found at https://doi.org/10.1128/MCB.00527-18.
For a companion article on this topic, see https://doi.org/10.1128/MCB.00516-18.
REFERENCES
- 1.Mathien S, Soulez M, Klinger S, Meloche S. 2018. Erk3 and Erk4, p 1632–1638. In Choi S. (ed), Encyclopedia of signaling molecules, 2nd ed Springer International Publishing, Cham, Switzerland. [Google Scholar]
- 2.Boulton TG, Nye SH, Robbins DJ, Ip NY, Radziejewska E, Morgenbesser SD, DePinho RA, Panayotatos N, Cobb MH, Yancopoulos GD. 1991. ERKs: a family of protein-serine/threonine kinases that are activated and tyrosine phosphorylated in response to insulin and NGF. Cell 65:663–675. [DOI] [PubMed] [Google Scholar]
- 3.Turgeon B, Saba-El-Leil MK, Meloche S. 2000. Cloning and characterization of mouse extracellular-signal-regulated protein kinase 3 as a unique gene product of 100 kDa. Biochem J 346:169–175. doi: 10.1042/bj3460169. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 4.Rousseau J, Klinger S, Rachalski A, Turgeon B, Deleris P, Vigneault E, Poirier-Heon JF, Davoli MA, Mechawar N, El Mestikawy S, Cermakian N, Meloche S. 2010. Targeted inactivation of Mapk4 in mice reveals specific nonredundant functions of Erk3/Erk4 subfamily mitogen-activated protein kinases. Mol Cell Biol 30:5752–5763. doi: 10.1128/MCB.01147-10. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 5.Coulombe P, Rodier G, Pelletier S, Pellerin J, Meloche S. 2003. Rapid turnover of extracellular signal-regulated kinase 3 by the ubiquitin-proteasome pathway defines a novel paradigm of mitogen-activated protein kinase regulation during cellular differentiation. Mol Cell Biol 23:4542–4558. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6.Deleris P, Rousseau J, Coulombe P, Rodier G, Tanguay PL, Meloche S. 2008. Activation loop phosphorylation of the atypical MAP kinases ERK3 and ERK4 is required for binding, activation and cytoplasmic relocalization of MK5. J Cell Physiol 217:778–788. doi: 10.1002/jcp.21560. [DOI] [PubMed] [Google Scholar]
- 7.De la Mota-Peynado A, Chernoff J, Beeser A. 2011. Identification of the atypical MAPK Erk3 as a novel substrate for p21-activated kinase (Pak) activity. J Biol Chem 286:13603–13611. doi: 10.1074/jbc.M110.181743. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 8.Deleris P, Trost M, Topisirovic I, Tanguay PL, Borden KL, Thibault P, Meloche S. 2011. Activation loop phosphorylation of ERK3/ERK4 by group I p21-activated kinases (PAKs) defines a novel PAK-ERK3/4-MAPK-activated protein kinase 5 signaling pathway. J Biol Chem 286:6470–6478. doi: 10.1074/jbc.M110.181529. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 9.Perander M, Al-Mahdi R, Jensen TC, Nunn JA, Kildalsen H, Johansen B, Gabrielsen M, Keyse SM, Seternes OM. 2017. Regulation of atypical MAP kinases ERK3 and ERK4 by the phosphatase DUSP2. Sci Rep 7:43471. doi: 10.1038/srep43471. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 10.Schumacher S, Laass K, Kant S, Shi Y, Visel A, Gruber AD, Kotlyarov A, Gaestel M. 2004. Scaffolding by ERK3 regulates MK5 in development. EMBO J 23:4770–4779. doi: 10.1038/sj.emboj.7600467. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 11.Seternes OM, Mikalsen T, Johansen B, Michaelsen E, Armstrong CG, Morrice NA, Turgeon B, Meloche S, Moens U, Keyse SM. 2004. Activation of MK5/PRAK by the atypical MAP kinase ERK3 defines a novel signal transduction pathway. EMBO J 23:4780–4791. doi: 10.1038/sj.emboj.7600489. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 12.Al-Mahdi R, Babteen N, Thillai K, Holt M, Johansen B, Wetting HL, Seternes OM, Wells CM. 2015. A novel role for atypical MAPK kinase ERK3 in regulating breast cancer cell morphology and migration. Cell Adh Migr 9:483–494. doi: 10.1080/19336918.2015.1112485. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 13.Klinger S, Turgeon B, Levesque K, Wood GA, Aagaard-Tillery KM, Meloche S. 2009. Loss of Erk3 function in mice leads to intrauterine growth restriction, pulmonary immaturity, and neonatal lethality. Proc Natl Acad Sci U S A 106:16710–16715. doi: 10.1073/pnas.0900919106. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14.Kornev AP, Taylor SS. 2010. Defining the conserved internal architecture of a protein kinase. Biochim Biophys Acta 1804:440–444. doi: 10.1016/j.bbapap.2009.10.017. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 15.West DB, Engelhard EK, Adkisson M, Nava AJ, Kirov JV, Cipollone A, Willis B, Rapp J, de Jong PJ, Lloyd KC. 2016. Transcriptome analysis of targeted mouse mutations reveals the topography of local changes in gene expression. PLoS Genet 12:e1005691. doi: 10.1371/journal.pgen.1005691. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 16.Bradley A, Anastassiadis K, Ayadi A, Battey JF, Bell C, Birling M-C, Bottomley J, Brown SD, Bürger A, Bult CJ, Bushell W, Collins FS, Desaintes C, Doe B, Economides A, Eppig JT, Finnell RH, Fletcher C, Fray M, Frendewey D, Friedel RH, Grosveld FG, Hansen J, Hérault Y, Hicks G, Hörlein A, Houghton R, Hrabé de Angelis M, Huylebroeck D, Iyer V, de Jong PJ, Kadin JA, Kaloff C, Kennedy K, Koutsourakis M, Lloyd KCK, Marschall S, Mason J, McKerlie C, McLeod MP, von Melchner H, Moore M, Mujica AO, Nagy A, Nefedov M, Nutter LM, Pavlovic G, Peterson JL, Pollock J, Ramirez-Solis R, Rancourt DE, Raspa M, Remacle JE, Ringwald M, Rosen B, Rosenthal N, Rossant J, Ruiz Noppinger P, Ryder E, Schick JZ, Schnütgen F, Schofield P, Seisenberger C, Selloum M, Simpson EM, Skarnes WC, Smedley D, Stanford WL, Stewart AF, Stone K, Swan K, Tadepally H, Teboul L, Tocchini-Valentini GP, Valenzuela D, West AP, Yamamura K-I, Yoshinaga Y, Wurst W. 2012. The mammalian gene function resource: the International Knockout Mouse Consortium. Mamm Genome 23:580–586. doi: 10.1007/s00335-012-9422-2. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 17.Jokela H, Hakkarainen J, Katkanaho L, Pakarinen P, Ruohonen ST, Tena-Sempere M, Zhang FP, Poutanen M. 2017. Deleting the mouse Hsd17b1 gene results in a hypomorphic Naglu allele and a phenotype mimicking a lysosomal storage disease. Sci Rep 7:16406. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 18.Maguire S, Estabel J, Ingham N, Pearson S, Ryder E, Carragher DM, Walker N, Sanger MGP Slc25a21 Project Team, Bussell J, Chan WI, Keane TM, Adams DJ, Scudamore CL, Lelliott CJ, Ramirez-Solis R, Karp NA, Steel KP, White JK, Gerdin AK. 2014. Targeting of Slc25a21 is associated with orofacial defects and otitis media due to disrupted expression of a neighbouring gene. PLoS One 9:e91807. doi: 10.1371/journal.pone.0091807. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 19.Olson EN, Arnold HH, Rigby PW, Wold BJ. 1996. Know your neighbors: three phenotypes in null mutants of the myogenic bHLH gene MRF4. Cell 85:1–4. [DOI] [PubMed] [Google Scholar]
- 20.Pan Y, Zhang L, Liu Q, Li Y, Guo H, Peng Y, Peng H, Tang B, Hu Z, Zhao J, Xia K, Li JD. 2016. Insertion of a knockout-first cassette in Ampd1 gene leads to neonatal death by disruption of neighboring genes expression. Sci Rep 6:35970. doi: 10.1038/srep35970. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 21.Scacheri PC, Crabtree JS, Novotny EA, Garrett-Beal L, Chen A, Edgemon KA, Marx SJ, Spiegel AM, Chandrasekharappa SC, Collins FS. 2001. Bidirectional transcriptional activity of PGK-neomycin and unexpected embryonic lethality in heterozygote chimeric knockout mice. Genesis 30:259–263. [DOI] [PubMed] [Google Scholar]
- 22.Kramer A, Green J, Pollard J Jr, Tugendreich S. 2014. Causal analysis approaches in Ingenuity Pathway Analysis. Bioinformatics 30:523–530. doi: 10.1093/bioinformatics/btt703. [DOI] [PMC free article] [PubMed] [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.





