Summary
Spatial neglect is a common clinical syndrome involving disruption of the brain’s attention-related circuitry, including the dorsocaudal temporal cortex. In macaques, the attention deficits associated with neglect can be readily modeled, but the absence of evidence for temporal cortex involvement has suggested a fundamental difference from humans. To map the neurological expression of neglect-like attention deficits in macaques, we measured attention-related fMRI activity across the cerebral cortex during experimental induction of neglect through reversible inactivation of the superior colliculus and frontal eye fields. During inactivation, monkeys exhibited hallmark attentional deficits of neglect in tasks using either motion or non-motion stimuli. The behavioral deficits were accompanied by marked reductions in fMRI attentional modulation that were strongest in a small region on the floor of the superior temporal sulcus; smaller reductions were also found in frontal eye fields and dorsal parietal cortex. Notably, direct inactivation of the mid-STS cortical region identified by fMRI caused similar neglect-like spatial attention deficits. These results identify a putative macaque homolog to temporal cortex structures known to play a central role in human neglect.
Keywords: spatial neglect, selective attention, superior colliculus, temporal cortex, fMRI, reversible inactivation, macaque
eTOC Blurb
Using fMRI in macaques performing attention tasks combined with reversible inactivations, Bogadhi et al. provide causal evidence that a region on the floor of the superior temporal sulcus is a crucial node in the cortical control of covert selective attention and a putative homolog to temporal cortex regions in humans implicated in spatial neglect.
Introduction
In humans, spatial neglect is a common consequence of stroke damage, and is characterized by failures to orient, detect or respond to stimuli in the visual field opposite to the brain lesion in the absence of sensory processing or motor deficits [1–8]. The failure to detect stimuli is often observed even when individuals have unlimited time to explore, although less severe chronic deficits can be identified using more sensitive tests such as Posner-style cueing paradigms [9,10].
The anatomy of spatial neglect is complex and includes multiple brain systems related to selective attention. Spatial neglect is often associated with damage to the inferior parietal and frontal cortices [11–15], although damage to subcortical structures in the telencephalon (e.g. striatum), thalamus (e.g. pulvinar) and midbrain (e.g. superior colliculus, SC) can lead to similar symptoms [16–18].
Recent work in humans has placed emphasis on the temporal cortex, with meta-analysis suggesting that its contribution to spatial neglect has been previously underappreciated [19]. In particular, the dorsocaudal temporal cortex regions of the superior temporal gyrus (STG) and temporo-parietal junction (TPJ) have been hypothesized to play a particularly important role in spatial neglect [20–26]. These temporal cortical regions are also part of the functional network with frontal and parietal areas implicated in spatial attention in humans [27].
Understanding the brain mechanisms underlying spatial neglect requires systematic testing of hypotheses in animal models such as the macaque, whose perceptual specializations are similar to those in humans [28,29]. Attention-related deficits associated with visual neglect in humans have been demonstrated in the macaque following reversible inactivation of several homologous brain structures, such as the superior colliculus, pulvinar, parietal cortex (lateral intraparietal area, LIP) and prefrontal cortex (frontal eye fields, FEF) [30–34]. Attention-related areas have also been identified in the superior temporal sulcus of monkeys using fMRI [35–37], and earlier studies showed that large-scale lesions of the temporal cortex result in orienting deficits like those occurring in unilateral neglect [38,39]. However, direct comparison of fMRI results between humans and macaques suggests that monkeys might simply lack a homologue of the temporo-parietal junction [40], raising the possibility that the temporal cortical contribution to spatial neglect might be a specialization of the human cerebral cortex, and cannot be studied in macaques.
To determine brain regions associated with these processes in monkeys, we performed fMRI before and during the expression of neglect-like attention deficits in two monkeys performing visual selective attention tasks. We used reversible inactivation of midbrain SC to manipulate behavioral performance, as inactivation of this structure leads to robust attention-related deficits, which are a hallmark of neglect [10,31,41]. The broad coverage of fMRI provides a means to compare attention-related modulation throughout the brain under normal behavior (“control”) and following SC inactivation (“impaired”) to identify brain regions functionally affected during the neglect-like attention deficits.
We demonstrate that, across the monkey brain, the strongest unilateral suppression of attention-related modulation during reversible inactivation was found in a circumscribed region of the mid-STS cortex. The reduction of attention-related modulation in this region did not depend on the stimulus feature used in the attention tasks, and the same temporal region was also affected by inactivation of prefrontal cortex. Moreover, in a direct causal test, we show that focal reversible inactivation of neuronal activity in this region of temporal cortex itself produced neglect-like attention deficits. These findings identify for the first time a region in the mid-STS cortex of macaque that is causally linked to neglect-like attention deficits and is functionally connected with both midbrain and prefrontal circuits for selective attention.
Results
Two adult macaque monkeys were scanned using BOLD fMRI across repeated sessions while they performed a set of attention tasks previously demonstrated to identify attention-related modulation in humans and monkeys [37,42]. In each task, the color of the central cue indicated which stimulus should be attended covertly – the monkeys maintained strict central fixation and reported the relevant changes detected by releasing a joystick (Figure 1A-D). In the Baseline task, monkeys monitored the fixation stimulus to detect a possible luminance change. The Ignore task was similar but included peripheral visual stimuli that could change motion direction but were entirely task irrelevant. In the Attend task, monkeys monitored the same peripheral visual stimuli to detect possible changes in motion direction (see Video S1). All three tasks were matched in terms of overall difficulty; the hit rates for detecting relevant changes were comparable between Attend (Monkey #1: 69.4%; Monkey #2: 72.9%) and Ignore tasks (Monkey #1: 74.3%; Monkey #2: 65.1%). Importantly, previous fMRI studies in monkeys have shown that this central-vs-peripheral task design [37] activates peripheral visual field voxels in the same set of attention-related cortical areas as found with other task designs, such as left-vs-right cueing and visual search [35,36,43], indicating that identification of attention-related voxels in monkeys is highly reproducible across different labs and paradigms.
Attention deficits induced by inactivation of superior colliculus
Neglect-like spatial attention deficits were induced by inactivation of the midbrain SC using microinjection of muscimol (0.3 – 0.5 μl into intermediate layers, left SC in monkey #1 and right SC in monkey #2, 18/42 fMRI sessions); in other fMRI sessions there was either no injection (16/42) or injection of saline (8/42) as a control. Overall, we obtained 4648 blocks of trials for each of the attention tasks (1792 with muscimol, 1928 with no injection, 928 with saline).
Consistent with previous findings, SC inactivation caused spatial attention deficits in the Attend task for contralateral stimulus changes [31,41]. During SC inactivation (Figure 1F), all but one session showed a significant reduction in hit rate for motion-direction changes in the affected contralateral visual field compared to the unaffected ipsilateral visual field (Chi-square proportion test; p<0.05). There was no difference in hit rates between the contralateral and ipsilateral visual fields (Chi-square proportion test; p>0.05) for the no-injection and saline sessions. The deficits caused by SC inactivation mimic the failures to detect contralateral targets observed in human neglect patients during cued attention tasks [10,27].
In addition to causing spatial attention deficits, SC inactivation also affected the metrics of saccadic eye movements made to peripheral targets in a visually guided saccade task, and these changes in saccades provided a useful and independent measure to gauge the efficacy of the SC inactivation at multiple time points in each experiment. First, prior to each fMRI session, we mapped the spatial extent of the saccade deficits and confirmed that the portion of the visual field affected by SC inactivation fully overlapped the peripheral stimulus in the attention tasks but did not include the central visual field (Figure 1E). Second, we checked the effectiveness of muscimol at the peripheral stimulus location at the end of each imaging run (every 8 minutes) by having the monkeys perform a pair of visually guided saccade into and out of the affected visual field location (Figure 1E, bottom); for all data reported here, the latencies of saccades to targets into the affected field were significantly longer than the latencies of saccades to targets in the unaffected visual field (Wilcoxon rank sum test; p<0.05). In addition, during the fMRI sessions, we measured eye movements during the attention tasks to exclude the possibility that changes in the stability of fixation contributed to our imaging results.
Mid-STS cortex showed largest reduction of attention-related modulation during SC inactivation
We first performed a voxel-wise analysis contrasting the BOLD measurements between the Attend and Ignore tasks and projected the t-scores (Bonferroni corrected; p<0.05) onto partially inflated cortical surfaces for the hemisphere ipsilateral to the pending SC inactivation. During control sessions, there was significant modulation in areas previously implicated in visual attention [35–37], including visual areas, parts of the superior temporal sulcus (STS), and areas in parietal and frontal cortex (Figure 2A,C). During SC inactivation, several of these same areas showed reduced attention-related modulation, but the largest reductions were in portions of the mid-STS (Figure 2B,D). These effects were specific to the hemisphere associated with impaired performance; there was no evidence of suppressed attention-related modulation in the hemisphere opposite to the SC inactivation (Figure S1).
To directly visualize the changes in attention-related modulation caused by SC inactivation, we performed a voxel-wise ANOVA with two factors and two levels each (attend versus ignore, control versus impaired), similar to the analysis used in a previous human fMRI study of spatial attention deficits in neglect [27]. We then overlaid the interaction term F-statistic from the voxel-wise ANOVA onto partially inflated cortical surfaces of the ipsilateral hemispheres in both monkeys (Figure 3A,B), with negative values (blue) indicating decreases in modulation during SC inactivation. Control analyses confirm that the thresholded maps in Figure 3 do not omit any regions whose modulation was reduced during the attention deficits (Figure S2).
In the resulting F-statistic maps, a contiguous region in the mid-STS cortex stands out as showing the largest loss of attention-related modulation during SC inactivation (Figure 3A,B). As clarified by a magnified view of the inflated mid-STS cortex, the affected voxels in this region spanned two anatomical areas situated in the depths of the superior temporal sulcus [44,45]: anterior FST and posterior IPa in both monkeys (Figure 3C,D); hence, we refer to this region as aFST/IPa. Coronal slices show that the effects were localized to the lower part of the floor of the STS in both monkeys (Figure 3E,F). The reductions were specific to the hemisphere on the same side as the SC inactivation (Monkey #1: F (1,24971) = −165.58; Monkey #2: F (1, 26645) = −111.59); in the other hemisphere, there were significant increases in both monkeys (Monkey #1: F (1,24971) = 29.83; Monkey #2: F (1, 26645) = 44.15).
To corroborate these results, we performed another, independent analysis by identifying regions of interest (ROIs), defined as 2mm-radius spheres centered on the local maxima of the attention-related modulation from the control sessions. Keeping these ROI definitions fixed, we then assessed how the modulation in these pre-defined ROIs changed during SC inactivation. This analysis identified 9 ROIs, illustrated by the coronal slices and time-courses in Figure 4. We also computed d-prime values (which capture effects on both the mean and variance of the BOLD signal) to summarize the attention-related modulation during control and impaired performance (bar plots in Figure 4). We then compared the modulation (d’) during control and impaired conditions to identify ROIs with significant changes during the impaired conditions (bootstrap test; p<0.05; Bonferroni corrected), and the rows in Figure 4 are rank-ordered by the size of the decrease in attention-related modulation. Consistent with the voxel-wise ANOVA results (Figure 3), the largest reductions in attention-related modulation were in the ROI located in the mid-STS cortex and the effect was specific to the hemisphere ipsilateral to SC inactivation (Figure 4A,B). Smaller reductions were found in other cortical areas well-known to be involved in selective attention: there were significant reductions ipsilateral to SC inactivation in parts of prefrontal cortex (FEF) and parietal cortex (LIPd but not LIPv). There were also some changes in visual areas but the effects were not unilateral and were mixed across both monkeys.
Direct comparison of these ROIs during impaired and control conditions illustrates the distinctive changes in attention-related BOLD modulation we found most prominently in the aFST/IPa region (Figure S3). The ROIs ipsilateral to SC inactivation generally all had lower d’ values during impaired compared to control conditions (Figure S3A,C), with somewhat larger reductions in attention-related regions for monkey #1 than for monkey #2. However, the largest reductions in both monkeys were found in aFST/IPa – the aFST/IPa is furthest from the line of unity slope (red arrows in Figure S3A,C). These reductions in attention-related BOLD modulation were spatially specific in aFST/IPa and some, but not all, of the other ROIs contralateral to SC inactivation (Figure S3B,D), as shown by the data points lying along or above the line of unity slope.
We performed several controls to validate these findings. Analysis of sessions with injections of saline versus muscimol into the SC confirm the findings that the mid-STS cortex, along with FEF, showed a unilateral reduction in modulation during SC inactivation (Figure S4). We verified that these findings did not depend on our choice of attention-related metric: we obtained the same result when we used the β coefficient of the term contrasting Attend and Ignore conditions – namely, the difference between mean BOLD in Attend and mean BOLD in Ignore (μA−μI). Taken together, these results demonstrate that an attention-related area in the mid-STS cortex (aFST/IPa) is causally implicated in the neglect-like spatial attention deficits caused by SC inactivation.
Mid-STS cortex selectively affected with non-motion as well as motion stimuli
We next tested whether the loss of attention-related modulation in mid-STS cortex was specific to the use of visual motion stimuli in our attention tasks. We acquired additional fMRI sessions using the same task design, except that the random dot motion stimulus was replaced with a second-order orientation stimulus (Video S2) that could not be detected based on changes in motion energy (Figure 5A,B, Figure S5). We collected 7 no-injection (824 blocks each for both the Ignore and Attend tasks) and 9 SC inactivation sessions (848 blocks each for both the Ignore and Attend tasks), and confirmed that SC inactivation significantly affected performance for the contralateral second-order orientation changes compared to the ipsilateral second-order orientation changes in the Attend task during every session (Figure 5C; Chi-square proportion test; p<0.05).
We first performed a voxel-wise analysis contrasting the BOLD measurements between the Attend and Ignore tasks, as before, and found significant attention-related modulation (t-scores, Bonferroni corrected; p<0.05) in the mid-STS cortex (black arrow in Figure 5D), as well as areas of posterior STS, IPS and the frontal cortex. As expected, the attention-related modulation in the second-order orientation task was sparser, because the orientation stimulus lacked the modulation of motion energy provided by the moving random dot stimulus. These results show that the aFST/IPa region in mid-STS cortex was modulated during covert visual attention even in the absence of visual motion.
We then determined if the attention-related modulation during the second-order orientation task was also changed during SC inactivation (Figure 5E), using the same voxel-wise ANOVA analysis described in the earlier section. The voxels most affected during SC inactivation were once again identified in the mid-STS region at the border between anterior FST and posterior IPa on the side associated with impaired performance (F (1, 23083) = −63.64; white arrow in Figure 5F). Comparison of coronal slices confirmed that the largest decreases occurred in the same voxels in the mid-STS region during both the motion task and second-order orientation task, even though the peak stimulus activations occurred elsewhere (Figure S6). There was no effect in the other hemisphere (F (1, 23083) = 0.000419), and region-of-interest analysis confirmed the largest reduction in aFST/IPa (Figure S7A). The affected voxels in the mid-STS (blue region in Figure 5F) completely overlapped with the aFST/IPa region that was affected in the motion task (white contour in Figure 5F), in the same lower part of the fundus in the STS at the identical anterior-posterior location (compare Figure 5G and Figure 3E). These results demonstrate that the same region of mid-STS cortex is causally linked to neglect-like spatial attention deficits even when the task requires attention to second-order orientation rather than motion. Additional testing with a much larger set of stimuli, including stimuli that contain no motion energy at all, would be needed to test if these effects truly generalize across stimulus features.
Mid-STS cortex selectively affected during attention deficits caused by FEF inactivation
Because neglect is associated with both cortical and subcortical attention-related circuits, we next tested whether the same mid-STS region was affected by inactivation of frontal eye fields (FEF) in prefrontal cortex. We identified FEF in the anterior bank of the arcuate sulcus using microstimulation with currents of 40 μA to evoke saccades (Figure 6A). For reversible inactivation, we injected 1–2 μl of muscimol and mapped the affected visual field using a visually guided saccade task (Figure 6B), confirming that the affected portion of the visual field overlapped the contralateral stimulus in the attention task. During the attention task, we found a significant effect on the median response times for contralateral motion-changes compared to ipsilateral motion-changes (median RTcontra = 545 ms; RTipsi = 521 ms; Wilcoxon rank sum test; p<0.001), although hit rates were not significantly changed (Chi-square proportion test; p>0.05). Overall, we collected 7 no-injection (768 blocks each for both the Ignore and Attend tasks) and 7 inactivation sessions (736 blocks each for both the Ignore and Attend tasks).
As expected, during control sessions there was significant attention-related modulation in several cortical areas including the mid-STS region (Figure 6C). During FEF inactivation, the most strongly affected voxels were again found in the ipsilateral mid-STS region at the border between anterior FST and IPa (F (1, 21322) = −93; white arrow in Figure 6E, see also Figure S7B), with no significant effect in the contralateral mid-STS region (F (1, 21322) = 2.684). Once again, the region identified during FEF inactivation (blue region) fully overlapped with the region identified during SC inactivation (white contour). Region-of-interest analysis showed that the affected region was localized to the fundus of the STS at nearly the same anterior-posterior location as that identified during SC inactivation (Figure 6F). Although the size of the changes during FEF inactivation were smaller than those during SC inactivation, consistent with the weaker effects of inactivation on attention task performance [46], these results demonstrate that the same mid-STS region identified by manipulating activity in the SC is also causally linked to prefrontal attention areas.
Reversible inactivation of the mid-STS region itself caused spatial attention deficits
Finally, given the conspicuous drop in attention-related modulation in the mid-STS region during inactivation of either the midbrain SC or prefrontal FEF, we tested the behavioral consequence of directly inactivating the mid-STS region itself. Following procedures similar to those used during inactivation of the SC and FEF, we injected 4–6 μl of muscimol into the center of the aFST/IPa region identified in monkey #1, guided by the structural MRI localization of the ROI.
Unlike SC or FEF, reversible inactivation of this mid-STS region had no detectable effects on the metrics of saccadic eye movements (Figure 7A) demonstrating that the unilateral effects in this region during SC and FEF inactivation were not related to suppression or facilitation of eye movements. However, inactivation dramatically impaired detection performance in the Attend task for contralateral stimulus changes (Figure 7B), causing spatial attention deficits at least as large as those observed during inactivation of the SC (Figure 1F). During all 6 inactivation sessions, there was a significant reduction in hit rate for motion-direction changes for the stimulus in the contralateral visual field compared to the stimulus in the ipsilateral visual field (Chi-square proportion test; p<0.05); there was no significant difference in hit rates for the no-injection and saline-injection control sessions (orange and black symbols).
Moreover, the disruption in detection performance was markedly reduced when only a single motion patch was presented on each trial (Figure 7C), demonstrating that the deficits had extinction-like properties [47] consistent with spatial neglect. These results directly demonstrate that this circumscribed region of mid-STS cortex plays a causal role in the covert orienting of attention – the central functions that are disrupted during spatial neglect – without affecting overt aspects of orienting such as the generation or suppression of saccadic eye movements.
Discussion
Using fMRI and reversible inactivation in monkeys performing attention tasks, we identified a localized region in the floor of the mid-STS cortex (aFST/IPa) as the most strongly affected patch of cortex during neglect-like spatial attention deficits. Several aspects of our results point to the uniqueness of this patch of cortex. The loss of attention-related modulation was observed in the same voxels for both motion and non-motion tasks, consistent with a general role in visual selection rather than processing of particular stimulus features. The same region was affected during impairments induced by inactivation of the SC in the midbrain and the FEF in prefrontal cortex, showing that it is a shared node in both cortical and subcortical attention circuits. Moreover, focal inactivation of this region itself caused neglect-like deficits in covert attention, but without affecting saccadic eye movements, unlike other brain regions in monkey implicated in control of attention (e.g., SC, FEF). These findings go beyond earlier reports in monkeys that large scale lesions of temporal cortex result in deficits in orienting movements [38,39] by precisely identifying a circumscribed region of the temporal cortex that is functionally linked to covert orienting behavior. Together, our results demonstrate for the first time a causal link between neglect-like deficits and an attention-related region in the mid-STS cortex of monkeys.
It may seem surprising that our results single out a region in mid-STS cortex, because most studies of attentional control in nonhuman primates have focused on the roles of frontal and parietal cortex [48,49]. However, the STS cortex is connected with both frontal and parietal cortical areas involved with attention, as well as with several other visual and non-visual sensory areas [50], and recent fMRI studies in monkeys have identified attention-related regions in the superior temporal sulcus, as well as in frontal and parietal areas [35–37,43]. A similar mid-STS region, albeit in the upper bank of STS, was also identified in monkeys performing memory-guided saccades, before and during reversible inactivation of area LIP, suggesting this region was involved in compensating for the orienting deficits caused by parietal inactivation [51]. More specifically, a region in the posterior inferotemporal cortex (referred to as PITd) is strongly modulated during attention to motion stimuli, at similar anterior-posterior locations in the STS as the region we identified as aFST/IPa; the attention-related activation in this mid-STS region is not explained by eye movements, because it occurs during covertly performed tasks, and does not depend on the specific visual feature attended [36,37]. By showing that this mid-STS region is causally linked to other major attention-related structures – and is itself necessary for the normal control of covert attention – our results provide direct evidence that the cortical circuits for attention in monkeys include a crucial node in the mid-STS cortex, as part of an extended network that also includes prefrontal and parietal cortex.
The localization of this region in the mid-STS cortex in monkeys is broadly consistent with results from human studies. The anatomy of hemi-spatial neglect includes regions of the superior temporal cortex, especially the temporoparietal junction, that lies at the posterior end of the superior temporal sulcus in humans [6,27]. Functional imaging shows that this region of superior temporal cortex in humans is activated during an attention paradigm comparable to the one we used – subjects attended to spatial locations guided by cues presented at fixation [52]. This temporal cortical region is also a key node in the ventral attention network, which is implicated in interrupting the current focus of attention in favor of a novel object of interest [53]. The mid-STS region in monkeys provides a new experimental avenue for investigating how the neuronal processing in this node contributes to the control of attention, and specifically, how disruption of these processing steps causes the symptoms of spatial neglect. It is probably not a coincidence that this mid-STS region is also a major site of convergence between the dorsal “where” and ventral “what” streams of visual processing in macaques [54,55].
However, homology is notoriously difficult to establish, and there are major differences in cortical organization and function between humans and monkeys. The mid-STS region in monkeys has a similar functional connectivity to the temporoparietal junction area in humans [56], but the mid-STS region is notably not activated during the same rapid serial visual presentation task that reliably identifies the TPJ area in humans [40]. More fundamentally, spatial neglect in humans is predominantly associated with right hemisphere lesions [3,6], whereas the neglect-like spatial attention deficits generated in monkeys, here and previously, are equally well achieved with inactivation on either side of the brain [30–34]. It is unclear whether this difference in lateralization between monkeys and humans denotes a fundamental difference in the function of attention-related circuits or simply a difference in how comparable circuit elements are organized.
Further scrutiny of the behavioral deficits themselves would also be informative. Precisely timed tests of attention are routine in behavioral studies with monkeys but less common with neglect patients [9,10], and conversely, the typical clinical presentation of neglect – the loss of awareness of stimuli even with unlimited time to explore – has yet to be convincingly demonstrated in monkeys. By identifying a cortical region in monkeys with at least some of the distinctive functional and anatomical characteristics of the temporoparietal junction in humans, we are a step closer to understanding the higher-order visual and perceptual functions that are shared across primate species.
STAR Methods
CONTACT FOR REAGENT AND RESOURCE SHARING
Further information and requests for resources should be directed to and will be fulfilled by the Lead Contact: Richard J. Krauzlis (richard.krauzlis@nih.gov)
EXPERIMENTAL MODEL AND SUBJECT DETAILS
Animals
Two adult male rhesus monkeys (Macaca mulatta) weighing 7–9 kg participated in this study. All experimental protocols were approved by the National Eye Institute Animal Care and Use Committee and all procedures were performed in accordance with the United States Public Health Service policy on the humane care and use of laboratory animals. Under isoflurane and aseptic conditions, we surgically implanted plastic head-posts and electrophysiology chambers to access the SC and FEF. The SC chamber was angled 38o to the posterior of vertical and directed at the midline, 15 mm above and 1 mm posterior to the interaural line. The FEF chamber was angled 30o lateral of vertical and aimed at a point 18 mm lateral from the midline, 25 mm anterior to the interaural line.
METHOD DETAILS
Experimental apparatus
Monkeys were seated and head-fixed in a custom-built MR-safe chair with a joystick attached inside the chair. Before each imaging session, monkeys performed a visual guided saccade task inside a darkened booth. The saccade task was controlled using a modified version of PLDAPS [57]. Animals viewed visual stimuli from a distance of 48 cm that were displayed at 1920 × 1200 resolution (~ 60° x 38°) and 100Hz framerate on a VIEWPixx display (VPixx Technologies, Saint-Bruno, QC Canada), controlled by a mid-2010 Mac Pro (Apple Inc., Cupertino, CA) running MATLAB (The Mathworks, Natick, MA) with the Psychophysics Toolbox extensions [58–60]. Eye position was recorded using an EyeLink 1000 infrared eye-tracking system (SR Research Ltd., Ottowa, Ontario, Canada).
During each imaging session, monkeys performed attention tasks and visual guided saccade task inside the vertical scanner. Stimuli were back projected on to a screen placed inside the bore of the vertical scanner using an Epson projector controlled by a Windows 2007 machine running MATLAB R2012b (The Mathworks) with the psychophysics toolbox extensions [58]. The timing of the stimuli and events were controlled by a QNX system running QPCS. Monkey viewed the screen through a mirror placed in front at a 45° angle. The total viewing distance of the screen was 53 cm. Eye movements were acquired and monitored in the scanner using an iView system (Version 2.4, SensoMotoric Instruments). Eye signal was calibrated at the beginning of each session. Joystick presses and releases were detected by disruption of an optic-fiber transmission using a custom-built device. Joystick was calibrated once at the beginning of the experiments.
fMRI data collection
Anatomical and functional images were collected in a vertical magnet (4.7T, 60 cm vertical bore; Bruker Biospec) equipped with a Bruker S380 gradient coil. EPI volumes were acquired using a custom built transmit and 4-channel receive RF coil system (Rapid MR International). In each run, we collected 192 whole-brain EPI volumes at an isotropic voxel resolution of 1.5 mm and at a TR of 2.5 s.
Attention tasks: Motion-change detection
In the scanner, both monkeys performed three behavioral tasks: Baseline, Ignore and Attend. In all tasks, monkeys initiated the trial by holding the joystick down and fixating the central fixation spot with a colored central cue on a grey background. Monkeys fixated for the entire duration of the trial with in a 2° fixation window. The color of the central cue indicated the trial condition. In Baseline and Ignore trials, the color of the central cue was black (Figure 1A, 1B) and the relevant stimulus was the fixation stimulus. In Attend trials, the color of the central cue was red (Figure 1C) and the relevant stimulus was the peripheral motion stimulus. The sequence of events in three different trial conditions are as follows.
In Baseline trials, following 0.5 s of fixation, the luminance of the fixation spot decreased during a variable delay of 1 – 3 s on the 65% of the trials. Monkeys reported the luminance change by releasing the joystick within 0.3 – 0.8 s to get a juice reward (Figure 1A). A total of 8401 trials (4433 in Monkey #1 and 3968 in Monkey #2) were collected during control and 7484 trials (3667 in Monkey #1 and 3817 in Monkey #2) were collected during SC inactivation in both monkeys. We also collected 4446 trials during saline injection in monkey #1.
In Ignore trials, following 0.5 s of fixation, two random dot motion stimuli were presented on either side of fixation at 8° eccentricity (radius) and 10° above horizontal meridian (azimuth). During the variable delay of 1 – 3 s, the luminance of the fixation spot decreased on 65% of the trials. Independent of the fixation luminance change, one of the peripheral motion stimuli changed direction during the variable delay of 1 – 3 s on the 65% of the trials. Monkeys ignored the motion direction change and reported the luminance change by releasing the joystick within 0.3 – 0.8 s to get a juice reward (Figure 1C). If the monkeys released the joystick for a motion direction change, the trial was aborted. A total of 9139 trials (4912 in Monkey #1 and 4227 in Monkey #2) were collected during control and 8240 trials (4083 in Monkey #1 and 4157 in Monkey #2) were collected during SC inactivation in both monkeys. We also collected 4913 trials during saline injection in monkey #1.
In Attend trials, following 0.5 s of fixation, two random dot motion stimuli were presented at the same stimulus location as in Ignore trials. One of the peripheral motion stimuli changed direction during the variable delay of 1 – 3 s on the 65% of the trials. Monkeys reported the motion-direction change by releasing the joystick within 0.3 – 0.8 s to get a juice reward (Figure 1E). There was no fixation luminance change in Attend trials. A total of 8672 trials (4765 in Monkey #1 and 3907 in Monkey #2) were collected during control and 7742 trials (4026 in Monkey #1 and 3716 in Monkey #2) were collected during SC inactivation in both monkeys. We also collected 4794 trials during saline injection in monkey #1.
In all tasks, 35% of the trials were catch trials and monkeys hold the joystick down to get a juice reward.
Random dot motion stimuli
The random dot motion stimuli were circular patches of moving dots, with the direction of motion of each dot drawn from a normal distribution with a mean value (defined as the patch motion direction) at 30° above horizontal and a 16° standard deviation. The lifetime (10 frames, 100 ms), density (25 dots/°2/s), and speed of the dots (15 °/s) were held constant. The radius of the aperture was set to 3°. Luminance of each moving dot in the motion patches was 50 cd/m2. The change in direction of motion (Δ) was 1 ± 0.25 standard deviations for both monkeys across sessions.
Fixation spot stimulus
The size of the fixation spot was 0.23° and the size of the central cue was 0.35°. The background luminance of the screen was 14 cd/m2 and the luminance of the fixation spot was 50 cd/m2. The luminance change in fixation spot during Baseline and Ignore trials was 1–2 cd/m2 across sessions for both monkeys.
Attention tasks: Orientation-pulse detection
In addition to the motion-change detection task, monkey # 1 also performed a version of the attention tasks with orientation pulse stimuli instead of the random dot motion stimuli. The sequence of events in all three conditions (Baseline, Ignore, Attend) was kept the same as the motion-change detection version of the task. The onset of the motion stimuli was replaced with the onset of dynamic white noise stimuli updated every frame, and the motion-direction change was replaced with a 0.5 s second-order orientation pulse that was also updated every frame (Figure 5A, 5B). In the Attend condition, the monkey reported the orientation pulse by releasing the joystick within 0.3 – 0.8 s to get a juice reward (Figure 5A), whereas in the Ignore condition, monkey ignored the orientation pulse and reported the luminance change in the fixation spot by releasing the joystick within 0.3 – 0.8 s to get a juice reward (Figure 5B). In the Attend condition, a total of 3700 trials were collected during control and 2680 trials were collected during SC inactivation. In the Ignore condition, a total of 3752 trials were collected during control and 2698 trials were collected during SC inactivation.
The second-order orientation stimulus was generated by briefly (0.5 s) modulating the contrast of a white noise stimulus with a 2-dimensional sinusoid (Video S2). The noise stimulus was 6° in diameter and consisted of checks each the size of a pixel with luminance values ranging from 8 – 84 cd/m2, and the 2-dimensional sinusoid had a spatial frequency of 0.7 cycles/deg, and its orientation was 90°. We refer to this as a second-order orientation stimulus, because the oriented grating briefly visible in the stimulus was due to the local differences in contrast, not luminance differences. The mean luminance (38 cd/m2) of the stimulus was constant throughout its presentation and was the same across every band in the oriented grating.
Block Design
Baseline, Ignore and Attend tasks were presented in a block design as shown in Figure 1D. Each run started with a Baseline block which lasted for 10 s and was presented in every alternate block thereafter. Ignore and Attend blocks lasted for 20 s and were presented randomly between Baseline blocks. The number of Ignore and Attend blocks were balanced in a given run. Each run lasted 480s.
Electrophysiology
Locations for muscimol injections in the SC and FEF were identified by single-unit recording and electrical microstimulation. Single-unit activity was recorded using tungsten in glass-coated electrodes with impedances of 1–2 MOhm (Alpha Omega Co., Inc., Alpharetta, GA). Electrode position was controlled with a Narishige microdrive. The electrical signal was amplified and recorded online using the OmniPlex system (Plexon Inc., Dallas, Texas). Response fields and saccade-related movement fields were mapped by having the monkey perform the visually guided saccade task; we confirmed saccade-related activity consistent with the known activity patterns in the FEF or SC. Electrical microstimulation was also applied (70 ms train duration, 350 Hz, biphasic pulses with duration of 0.25 ms) to evoke saccades with currents (40 μA in FEF; 20 μA in SC) confirming that we were in the FEF or intermediate layers in SC [61,62]. All candidate sites were first identified by neuronal recordings and electrical stimulation prior to the muscimol inactivation experiment; in some cases, the FEF or SC site was verified immediately prior to muscimol injection using the electrode placed within the injection cannula [31].
Muscimol injections
Reversible inactivation of the intermediate layers of the SC (n = 27; monkey #1(LH): 19, monkey #2 (RH): 8), area FEF (n = 7; monkey #2 (RH)), and the aFST/IPa region (n = 6; monkey #1 (LH)) were done by injecting muscimol (5 mg/ml) in either the left (LH) or right (RH) hemisphere of each monkey. The amount of muscimol injected ranged from 0.3–0.5 μl in SC, 1–2 μl in FEF, and 4–6 μl in aFST/IPa. Injections were done using a custom-made apparatus modified from [63], with an injection pump at a rate of 0.5 μl in 10 mins. For saline controls, the same volumes of saline were injected at the same locations in the intermediate layers of the SC or in the aFST/IPa region.
Visually guided saccade task and mapping of affected visual field
In the saccade task, each trial started with the monkeys fixating a small square stimulus (0.23° wide, 50 cd/m2) placed at the center of the visual display. After 500 ms of fixation, a second target (0.23° wide, 50 cd/m2) was presented at some other location in the visual display. Monkeys were required to maintain fixation until the central fixation stimulus was turned off, 1–2 seconds after the onset of the peripheral target. At that point, the monkeys should make a saccade to the second, peripheral target and fixate it for at least 500 ms in order to receive a reward. The eye position data were used to detect saccades and quantify saccade metrics offline using methods described previously [64].
Before imaging, monkeys performed the saccade task outside the scanner and the location of the second target was systematically varied every trial in order to quantify the metrics of saccades to targets across the visual field. We quantified the impairments in saccade metrics during SC or FEF inactivation by measuring the difference in the peak velocity for saccades made to targets at different locations in the visual field before and during inactivation. The target locations where the peak velocities of the saccades were impaired identified the affected visual field (Figure 1E, 6B). Data were collected beginning 30 minutes after the end of the muscimol infusion.
Inside the scanner, monkeys performed the saccade task every 8 minutes and the location of the second target was alternated each trial between contralateral and ipsilateral stimulus locations (radius: 8°; azimuth: 10°). The time course of muscimol effect was measured as a difference in the saccade latency to targets in the contralateral affected visual field compared to targets in the ipsilateral unaffected visual field (Figure 1E). We measured the impairment on the saccade latency instead of peak velocity in the scanner because, the low sampling frequency of the eye tracker in the scanner limited the accurate measurement of peak velocities.
Stimulus mapping experiment
To identify voxels responding to foveal and peripheral stimuli locations, a flickering checker board stimulus (4 Hz) that had concentric rings of 2° width spanning up to 12° eccentricity was used. In foveal visual stimulation blocks, the checker board stimulus was masked everywhere except for the central 2° radius. In peripheral visual stimulation blocks, the checker board stimulus was masked everywhere except for the two eccentric stimulus locations used in the attention tasks. The foveal and peripheral stimulation blocks (20 s duration) were interleaved with fixation blocks (10 s duration). A total of 258 runs (150 in Monkey #1; 108 in Monkey # 2) were collected in both monkeys across 13 sessions. Functional maps showing peripheral and foveal voxels were created using the same methods as described for creating functional maps for the attention tasks.
QUANTIFICATION AND STATISTICAL ANALYSIS
fMRI Analysis
Preprocessing of the fMRI data was done using AFNI/SUMA software package [65]. Raw images were converted to AFNI data format. EPI volumes in each run were slice-time corrected using 3dTshift, followed by correction for static magnetic field inhomogeneities using the PLACE algorithm [66]. All EPI volumes were motion-corrected using 3dvolreg and were registered to the session anatomical using 3dAllineate. To combine EPI data across multiple sessions for a given animal, all sessions for a given animal were registered to a template session. A high resolution anatomical of each monkey was registered to the corresponding template session anatomical to overlay functional results in monkey’s native space. To overlay D99 atlas boundaries on the functional results, D99 anatomical in AFNI was registered to each monkey’s native space [67]. Surface maps were generated for D99 anatomical in each monkey’s native space using CARET from a white matter segmentation mask [68]. Surface maps of D99 in each monkey’s native space were viewed in SUMA overlaid with anatomical boundaries and functional results.
Functional maps of attention-related modulation
To identify voxels that were modulated by attention we performed a GLM analysis using 3dDeconvolve in AFNI. Attend and Ignore conditions were included as regressors of interest and Baseline condition, motion correction parameters were included as regressors of no interest (baseline model). To control for the effects caused by any differences during Attend and Ignore blocks in blinks (Wilcoxon rank sum test, p = 0.007 (Monkey # 1), p = 0.99 (Monkey # 2)), saccadic eye movements within the fixation window (Wilcoxon rank sum test, p < 0.0001 (Monkey # 1), p < 0.0001 (Monkey # 2)), rewards (Wilcoxon rank sum test, p < 0.0001 (Monkey # 1), p < 0.0001 (Monkey # 2)) and joystick movements (Wilcoxon rank sum test, p = 0.79 (Monkey # 1), p = 0.53 (Monkey # 2)), we included these factors as part of the regression model. Reward times, joystick event times (press and release), blink times and saccade times (left and right) were convolved with the hemodynamic impulse response function and were included as part of the baseline model. In the blocks of all three conditions for both monkeys, the median duration of fixation was above 85% of the block duration. Saccades within the fixation window (magnitude less than 1°) were detected using previously described methods [64].
T-scores contrasting Attend and Ignore conditions were projected on to the inflated maps to show voxels modulated by attention. All functional maps were thresholded (t-score > 5.02) to correct for multiple comparisons (p<0.05, Bonferroni correction). Voxels that mapped onto foveal locations, based on a separate retinotopic mapping experiment (described below), were excluded from the inflated maps in order to focus on BOLD changes related to whether or not the peripheral motion stimuli were attended, rather than the very small stimulus differences at the fovea in the two conditions (black versus red cue; Figure 1B,C).
Functional regions of interest and attention-related modulation
Functional regions of interest (ROIs) were identified based on the local maxima of the attention-related modulation map from the control sessions for each hemisphere using 3dExtrema in AFNI. The BOLD time-course for each Attend or Ignore block was computed as a % change in BOLD relative to the BOLD in Baseline block preceding it. For each ROI, an average time-course was constructed by pooling time-courses of all voxels within a 2mm radius around the local maxima across all blocks from all sessions. D-prime was computed for each ROI as a measure of attention-related modulation from the Attend and Ignore distributions of BOLD values taken from the TRs 2 – 8 of each block. Attend and Ignore distributions were constructed by pooling BOLD values across voxels in a given ROI and across blocks from different sessions. The mean and variance of the Attend and Ignore distributions were used to compute dprime (d′) following equation 1. The source of the variance in the Attend and Ignore distributions came from pooling BOLD values across blocks, sessions and voxels in a given ROI.
Equation 1 |
Voxel-wise ANOVA
For each voxel, we performed ANOVA with two factors and two levels each – covert attention (Attend and Ignore conditions) and neglect (control and inactivation). The 2×2 factorial design for each voxel was based on the BOLD values taken from the TRs 2 – 8 of Attend and Ignore time courses extracted from the control and neglect sessions. F-statistic of the interaction term was projected onto the inflated maps to show the effect of inactivation on attention-related modulation. For every voxel, the sign of the difference in attention-related modulation between neglect and control (d′Neglect - d′Control) was added to the F-statistic of the interaction term to differentiate the decrease in modulation from increase in modulation.
DATA AVAILABILITY
The data that support the findings of this study will be made available from the corresponding author upon request.
Supplementary Material
Highlights.
Midbrain inactivation causes reduced attention modulation in the cerebral cortex
A region in the mid-STS cortex was more affected than any other cortical region
Reduced attention modulation observed for both non-motion and motion stimuli
Direct inactivation of same mid-STS region disrupts attentional performance
Acknowledgments
We thank Tom Ruffner and Nick Nichols for technical support and Fabrice Arcizet, James Herman, Leor Katz and Lupeng Wang for helpful input. We thank Brian Russ for helpful suggestions in setting up fMRI preprocessing pipeline and constructing inflated maps. We also thank John Perrone for providing code for measuring motion energy. This work was supported by the National Eye Institute Intramural Research Program at the National Institutes of Health. Functional and anatomical MRI scanning was carried out in the Neurophysiology Imaging Facility Core (NIMH, NINDS, NEI) supported under IRP grant ZIC MH002899. This work utilized the computational resources of the NIH HPC Biowulf cluster.
Footnotes
Declaration of interests:
The authors declare no competing interests.
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Supplementary Materials
Data Availability Statement
The data that support the findings of this study will be made available from the corresponding author upon request.