| 2-OG | 2-Oxoglutarate |
| AACT | Acetoacetyl-CoA thiolase |
| ACCT | Acetyl-CoA acetyltransferase |
| ACL | ATP-citrate lyase |
| AMT | Ammonium transporter |
| AOX | Alternative oxidase |
| ATP | Adenosine triphosphate |
| BR | Brassinosteroid |
| CHS | Chalcone synthase |
| CoA | Coenzyme A |
| CS | Citrate synthase |
| DMAP | Dimethylallyl phosphate |
| DMAPP | Dimethylallyl diphosphate |
| FDR | False discovery rate |
| FPP | Farnesyl diphosphate |
| FW | Fresh weight |
| GAD | Glutamate decarboxylase |
| GABA | Gamma-aminobutyric acid |
| GDH | Glutamate dehydrogenase |
| GLS | Glucosinolate(s) |
| GO | Gene ontology |
| GOGAT | Glutamate synthase |
| GS | Glutamine synthetase |
| ICDH | Isocitrate dehydrogenase |
| IP | Isopentenyl phosphate |
| IPP | Isopentenyl diphosphate |
| iTRAQ | Isobaric tags for relative and absolute quantitation |
| MDH | Malate dehydrogenase |
| ME | Malic enzyme |
| MVA | Mevalonate |
| MVAP | Phosphomevalonate |
| NAD(H) | Nicotinamide adenine dinucleotide (reduced) |
| NADP(H) | Nicotinamide adenine dinucleotide phosphate (reduced) |
| NUDIX 3 | Nudix hydrolase and a dipeptidyl peptidase III |
| OAA | Oxaloacetate |
| PEP | Phosphoenolpyruvate |
| PEPCK | Phosphoenolpyruvate carboxykinase |
| PEPC | Phosphoenolpyruvate carboxylase |
| PK | Pyruvate kinase |
| TCA | Tricarboxylic acid |