Table 2:

Detailed classification of repeat sequences of Oplegnathus fasciatus

	Repbase TEs		TE proteins		De novo		Combined TEs
Type	Length (bp)	% in genome	Length (bp)	% in genome	Length (bp)	% in genome	Length (bp)	% in genome
DNA	39,147,527	5.03	5,390,266	0.69	93,089,344	11.95	124,417,402	15.98
Long interspersed nuclear element	23,983,322	3.08	16,460,762	2.11	57,167,551	7.34	85,761,250	11.01
Short interspersed nuclear element	875,585	0.11	0	0.00	914,559	0.12	1,747,250	0.22
Long terminal repeat	10,163,601	1.31	5,770,483	0.74	31,126,639	4.00	42,465,968	5.45
Satellite	2,028,992	0.26	0	0.00	2,613,480	0.34	4,361,048	0.56
Simple_repeat	1,556,026	0.20	0	0.00	5,179,965	0.67	6,386,303	0.82
Other	6,545	0.00	0	0.00	0	0.00	6,545	0.00
Unknown	331,430	0.04	0	0.00	20,636,768	2.65	20,967,052	2.69
Total	73,544,786	9.44	27,613,880	3.55	183,954,095	23.62	250,611,845	32.18