Table 1.
Wildcard symbol table for ambiguous genotypes
| Ambiguous GN symbol | Possible genotypes | Hete- or Homo-zygous | Sure to be SNV if reference is |
|---|---|---|---|
| Y | TT/TC/CC | Not sure | A, G |
| R | AA/AG/GG | Not sure | T, C |
| A, Y | AT/AC | Heterozygous | A, T, C, G |
| C, Y | CT/CC | Not sure | A, T, G |
| G, Y | GT/GC | Heterozygous | A, T, C, G |
| T, Y | TT/TC | Not sure | A, C, G |
| A, R | AA/AG | Not sure | T, C, G |
| C, R | CA/CG | Heterozygous | A, T, C, G |
| G, R | GA/GG | Not sure | A, T, C |
| T, R | TA/TG | Heterozygous | A, T, C, G |
Note: The wildcard characters are defined as: Y = T/C and R = A/G.