Abstract
Chlamydia is an obligate intracellular bacterium that relies on host cells for essential nutrients and adenosine triphosphate (ATP) for a productive infection. Although the unfolded protein response (UPR) plays a major role in certain microbial infectivity, its role in chlamydial pathogenesis is unknown. We hypothesized that Chlamydia induces UPR and exploits it to upregulate host cell uptake and metabolism of glucose, production of ATP, phospholipids, and other molecules required for its replicative development and host survival. Using a combination of biochemical and pathway inhibition assays, we showed that the 3 UPR pathway transducers—protein kinase RNA-activated (PKR)-like ER kinase (PERK), inositol-requiring enzyme-1α (IRE1α), and activating transcription factor-6α (ATF6α)—were activated during Chlamydia infection. The kinase activity of PERK and ribonuclease (RNase) of IRE1α mediated the upregulation of hexokinase II and production of ATP via substrate-level phosphorylation. In addition, the activation of PERK and IRE1α promoted autophagy formation and apoptosis resistance for host survival. Moreover, the activation of IRE1α resulted in the generation of spliced X-box binding protein 1 (sXBP1) and upregulation of lipid production. The vital role of UPR pathways in Chlamydia development and pathogenesis could lead to the identification of potential molecular targets for therapeutics against Chlamydia.
Keywords: Chlamydia, pathogenesis, unfolded protein response
Genital infection of women by the obligate intracellular bacteria of the genus Chlamydia causes complications such as pelvic inflammatory disease, ectopic pregnancy, and tubal-factor infertility [1]. The 1.4 million reported cases in the United States in 2014 was a 2.8% increase over 2013, despite awareness programs. The rising infections with attendant cost constitute a major public health concern, requiring a better understanding of Chlamydia pathogenesis, and the design of an efficacious, safe human vaccine. Chlamydial pathogenesis requires the productive infection of the host cells and host’s pathologic inflammatory responses. As an energy and nutrient parasite, lacking key enzymes of glucose metabolic pathways, including hexokinase, and essential phospholipids and envelope lipid components (ie, phosphatidylcholine [2], cholesterol, and sphingomyelin [2–5]), Chlamydia relies on the host cell for a productive infection. Chlamydial inclusion membrane proteins include transporters of ATP, lipids, and nucleotides that mediate a unidirectional nutrient flow into the inclusion. Interestingly, chlamydial-infected cells upregulate expression of glucose transporters, ATP production via substrate-level phosphorylation with higher pyruvate and its derivatives [6], and phospholipids synthesis [7]. Thus, Chlamydia has evolved to alter the host’s metabolic pathways to favor its energy and nutrient needs, although the biochemical processes and mechanisms were unknown.
Unfolded protein response (UPR) is a cellular response to pathological and physiological perturbation of the protein folding machinery of the endoplasmic reticulum (ER) resulting in a condition called ER stress [8]. The hallmark of UPR is the activation of 3 major signaling pathways enzymes—protein kinase RNA-activated (PKR)-like ER kinase (PERK), inositol-requiring enzyme-1α (IRE1α), and activating transcription factor-6α (ATF6α)—aimed at restoration of cellular homeostasis or activation of apoptosis if homeostasis cannot be restored [9]. Under normal physiological conditions, the 3 transducers of UPR (PERK, IRE1α, and ATF6α) are kept inactive by binding to glucose-regulated protein (GRP78), also called immunoglobulin heavy-chain binding protein (BiP), on their luminal domains [10]. However, during ER stress, the excess unfolded/misfolded proteins in the ER lumen are bound to BiP, thus dissociating and titrating it away from PERK, IRE1α, and ATF6α, hence their activation [11]. Activated PERK phosphorylates and inactivates the eukaryotic initiation factor 2-α (eIF2α) [12], causing a general cellular translation shutdown that lowers the amount of nascent peptides and proteins accumulating in the ER [13]. However, select open-reading frames that are preferentially translated under this condition include activating transcription factor 4 (ATF4) [13] and C/EBP homologous protein (CHOP) [14], transcription factors that activate genes involved in restoration of homeostasis or apoptosis [15]. PERK is activated in some neurodegenerative diseases, diabetes, tumors, and during interferon-γ (IFN-γ)–induced persistent chlamydial infection [16], and plays a role in energy and antioxidant production [6, 17]. Activation of IRE1α results in its acquisition of kinase and endonuclease activities [18]. The endonuclease activity specifically splices the messenger RNA (mRNA) of XBP1, excising a 26-base pair (bp) fragment to generate a potent transcription factor sXBP1 [19] that downregulates secretory proteins [20] but upregulates enzymes in the lipid biosynthesis pathway [21]. Also, the IRE1α/TRAF2 complex formed between activated IRE1α and tumor necrosis factor (TNF)–α receptor-associated factor 2 (TRAF2) [22] activates c-Jun to promote cell survival through upregulation of the microtubule-associated protein 1 light chain 3 (MAP-LC3) [23] and downregulation of tumor suppressors such as the phosphatase and tensin homolog (PTEN) [24]. Activation of ATF6α, a 90-kDa transmembrane basic leucine-zipper (bZIP) transcription factor, unmasks its Golgi localization signal [25, 26] and its translocation to the Golgi apparatus where it is cleaved by proteases to the active form [26] that upregulates chaperone proteins, such as BiP and 58-kDa inhibitor protein kinase (p58IPK), which increase the ER folding capacity to restore homeostasis [27]. Activated ATF6α also inhibits the PERK through its upregulation of p58IPK that reduces the phosphorylation of eIF2α and the expression of CHOP [28, 29]. The blocking of CHOP, a proapoptotic molecule, ensures the survival of ER-stressed cells [30]. Mutation in the ATF6 gene, causing a loss of the inhibitory function on the PERK, is associated with photoreceptor degeneration disease [31] and achromatopsia [32].
In addition to chemicals and nutrient-deprivation conditions, certain microbial agents, including viruses and bacteria, induce UPR [33], and it may be required for Brucella replication [34]. A potential role for UPR in chlamydial pathogenesis is suggested by its ability to enhance ATP via substrate-level phosphorylation and provide other metabolites in rapidly dividing cancer cells [17]. Also, UPR may provide the conditions for resistance of the host cell to apoptosis [35]. We tested the hypothesis that Chlamydia activates the major UPR signaling pathways the sources of the extra host energy, metabolites, and essential lipids parasitized for its development and initiation of disease [2]. Our results show that the 3 transducers of UPR (PERK, IRE1α, and ATF6α) are activated during Chlamydia infection, and they are required for replication and complications. Thus, targeting host UPR machinery could be an effective means of treating/preventing Chlamydia infection and its complications.
MATERIAL AND METHODS
Chlamydia Stocks, Mammalian Cells, and Mice
Chlamydia muridarum (the agent of mouse pneumonitis, MoPn) used in this study was propagated in McCoy cells and purified elementary bodies (EBs) were tittered as infectious-forming units per millimeter (IFU/mL) using standard procedures described previously [36]. Mammalian cells were mouse oviduct epithelial cells (C57epi.1) kindly provided by Dr Raymond Johnson (Indiana Univ., Indianapolis, IN). For in vitro studies, cells were maintained in epithelial cell medium (1:1 Dulbecco’s modified Eagle medium-F12K; Sigma, St. Louis, MO), supplemented with 10% heat-inactivated fetal bovine serum (HyClone, Logan, UT) and 2 mM L-glutamine (Glutamax I; Gibco/Invitrogen), and infection was in sucrose phosphate glutamate medium as previously described [37]. Female wild-type C57BL/6Ntac mice 5–8 weeks old were obtained from Taconic Farms, Inc. (Hudson, NY). Mice were housed at the Centers for Disease Control and Prevention (CDC) animal facility and fed with food and water ad libitum. A 12-hour light and a 12-hour dark cycle was maintained throughout the duration of the experiment. Five days prior to infection with Chlamydia, mice received subcutaneous injection of 2.5 μg/mouse Depo Provera (medroxy-progesterone acetate; Pfizer Inc, New York, NY). Mice were infected with 20 μl Chlamydia intravaginally at 105 IFU/mouse in phosphate-buffered saline while under the long-acting anesthetic sodium pentobarbital (30 μg/body weight) (Sigma-Aldrich, St Louis, MO). Productive infection was monitored by isolating and counting Chlamydia (IFU/mL) from genital swabs obtained from infected mice. Cell culture experiments were repeated at least 3 times, while animal experiments were repeated twice. All animal protocols were approved by the CDC Institutional Animal Care and Use Committee (IACUC).
UPR Pathways Inhibition Assays
In vitro studies to analyze the effect of UPR pathways inhibition on Chlamydia replication was performed by incorporating 20 μM PERK inhibitor (GSK2606414, Tocris Bioscience, Bristol, United Kingdom), or 120 μM IRE1α inhibitor (4 μ8C, Axon Medchem LLC, Reston, VA), or equal amount of dimethylsulphoxide (DMSO) solution (0.08% v/v) that was used in preparing each inhibitor in the infection medium. Briefly, 1.0 × 106 or 1.4 × 105 cells/well were seeded into 6- or 24-well plates, respectively, and infected with MoPn at a multiplicity of infection (MOI) of 1 or 5 for 24, 48, and 72 hours. Inhibitors for PERK kinase and IRE1α-RNase activities were simultaneously added during infection.
To determine the effect of UPR pathways inhibition on Chlamydia replication in vivo, 24 hours after infection with Chlamydia, the UPR inhibition experimental group was treated intravaginally with 20 μM PERK kinase inhibitor or 120 μM IRE1α RNase inhibitor, or an equal amount of DMSO solution that was used in preparing each inhibitor.
Western Blot Analysis
Total protein was prepared from cells by lysing in situ with M-PER Mammalian Protein Extraction Reagent (Thermo Scientific, Rockford, IL) supplemented with ethylenediaminetetraacetic acid-free protease inhibitor cocktail according to manufacturer’s instruction. Briefly, 1 mL of protein extraction reagent supplemented with 1× protease inhibitor was added to 107 cells and mixed gently for 5 minutes. Lysed cells were aspirated into a 15 mL tube and vortexed for 30 seconds. Protein concentration was determined using the Bradford method. Equal amounts of protein were loaded onto 4–20% PROTEAN TGX protein gel (Bio-Rad, Hercules, CA) and electrophoresed for 1 hour, and the separated bands were transferred onto nitrocellulose membrane (Bio-Rad). Membranes were washed, blocked with 5% casein or 5% nonfat milk or 5% bovine serum albumin for 1 hour, and incubated with primary antibody overnight at 4°C. The primary antibodies used recognized epitopes in the following proteins: phosphorylated-IRE1α and ATF6α (Novus-Bio, Littleton, CO), phosphorylated-PERK, phosphorylated-eIF2α, sXBP1, phosphorylated-c-Jun, ATF4, hexokinase II and glucose transporter 1 (Cell Signaling Technology, Beverly, MA); MAP-LC3β, and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (Santa Cruz Biotechnology, Inc, Dallas, TX). Washed membranes were incubated with horseradish peroxidase-conjugated goat antimouse or antirabbit immunoglobulin G secondary antibody for 1 hour, then analyzed using a ChemiDoc XRS+ system (Bio-Rad). Band intensity analysis was performed using Image Lab software.
Reverse Transcription–Polymerase Chain Reaction and Normal Polymerase Chain Reaction Analysis
Total RNA was isolated from cell cultures using RNeasy Plus Mini Kit (Qiagen, Germantown, MD) according to manufacturer’s instruction. All isolated RNAs were stored at −80°C until used. According to manufacturer’s instructions, reverse transcription–polymerase chain reaction (RT-PCR) was performed using RT2 First Strand Kit to reverse transcribe the isolated RNA into complementary DNA (cDNA). Primers for the detection of spliced and unspliced XBP1 and GAPDH mRNA were designed using National Center for Biotechnology Information Primer-Blast software. The primer pair selected for spliced and unspliced XBP1 mRNA were the same but their PCR product were 179-bp and 205-bp, respectively. The PCR product for GAPDH primer pair was 450-bp. The XBP1 primer pair used was as follows: Forward (TM 56.58°C; % GC 47.62): 5’- GAACCAGGAGTTAAGAACACG -3’; Reverse (59.61; % GC 55.00): 5’ – AGGCAACAGTGTCAGAGTCC -3’. For synthesis of cDNA, the concentration of RNA used was 1 μg per reaction mix of 50 μl while a 50 μl reaction mix for PCR contained 0.5 μg of cDNA. Genomic DNA was eliminated from RNA preparations using the genomic DNA elimination reagent of the RNeasy Plus Mini Kit. The analysis included the identification of a spliced RNA that is the conversion of a 205-bp to 179-bp band.
ATP and Lipid Assays
The ATP content of noninfected and Chlamydia-infected cells were determined using the ATP Colorimetric/Fluorometric Assay Kit (Bio Vision, Milpitas, CA) according manufacturer’s instruction. Briefly, cells were lysed in appropriate buffer and deproteinized. Lysed cells were centrifuged at 12 × g for 20 min and the supernatant was mixed with glycerol containing reagents to generate a product that was quantified using SPECTRAmax PLUS384 (Sunnyvale, CA).
The lipid content of cell cultures were measured using Phospholipid Assay Kit (Sigma-Aldrich Co. LLC, St. Louis, MO) according to manufacturer’s instructions.
Statistical Analysis
Statistical analyses were performed with SigmaPlot software. The data derived from different experiments were analyzed and compared by performing a 1- or 2-tailed t test, and the relationship between different experimental groupings was assessed by analysis of variance. Statistical significance was judged at P < .05.
RESULTS
Induction of the Three Major Signaling Pathways of UPR During Chlamydial Infection
In our initial investigation of the possibility that Chlamydia may exploit UPR for its energy and nutrient requirements, we undertook rigorous experimental validations to establish that Chlamydia induces UPR. First, we measured the levels of activated IRE1α, PERK, and ATF6α representing the 3 major pathways of UPR following infection of the murine oviduct epithelial cells (C57epi) with C. muridarum (MoPn). Monolayers of the C57epi cells were infected with MoPn at different MOIs, and cultures were harvested at 24, 48, and 72 hours. Results presented in Figure 1A–C show the activation of PERK, IRE1α, and ATF6α at different times postinfection. The activation of UPR in infected cells occurred within 24 and 48 hours, the period of active replication and inclusion development.
A key confirmation of UPR is the acquisition of the endonuclease activity by IRE1α, resulting in the splicing of XBP1 mRNA and upregulation of spliced XBP1 protein. The splicing of XBP1 mRNA was investigated using a combination of reverse transcription and conventional PCR approaches. The PCR primers used in the amplification of XBP1 gene was adopted from [38]. The primers were designed such that the unspliced mRNA of XBP1 will give a PCR product of 205-bp, while the spliced mRNA will give a PCR product of 179-bp. As shown in Figure 2A, the infection of C57epi cells with MoPn resulted in the splicing of XBP1 mRNA, and the inhibition of the RNase activity of activated IRE1α abrogated the splicing of XBP1. Also, at the protein level, Figure 2B shows that MoPn-infected C57epi cells showed the upregulation of XBP1 protein, and the inhibition of IRE1α RNase activity resulted in downregulation of XBP1. In addition, a confirmatory enzymatic activity that is the hallmark of UPR is the phosphorylation of eIF2α by PERK along a second signaling pathway of UPR [13]. Figure 2C shows that chlamydial infection resulted in the upregulation of phosphorylated eIF2α. We conclude that Chlamydia induces UPR, which may be exploited for energy and nutrients requirements during a productive infection.
UPR Signaling Pathways as a Source of Extracellular Host Energy During Chlamydia Infection
Chlamydial infection is characterized by a burst of supplementary host cell ATP production that is fostered by an upregulation of glucose transporters [7]. We tested the hypothesis that the substrate-level phosphorylation ATP generation step of the PERK pathway of UPR is exploited by chlamydia to promote its energy and nutrient parasitism, which supports the intracellular inclusion development. Because hexokinase II is upregulated as a crucial enzyme in the glycolytic pathway for rapid ATP production during substrate-level phosphorylation [39], we measured its expression as a marker of host cell energy boost during chlamydial infection. As shown in Figure 3A, there was an upregulation of hexokinase II during chlamydial infection. The upregulation of hexokinase II depended on the activation of PERK and IRE1α arms of the UPR because the inhibition of PERK kinase or IRE1α RNase activity resulted in the downregulation of hexokinase II (Figure 3A and 3B). Also, cellular glucose transporter-1 (Glut1) was upregulated during chlamydial infection, and the inhibition of the IRE1α RNase pathway resulted in its downregulation (Figure 3B). The results suggested that UPR increases host cell glucose utilization and ATP synthesis by substrate-level phosphorylation during chlamydial infection.
UPR Signaling Pathways as a Source of Extra Host Nutrients Parasitized by Chlamydia
The endonuclease activity of activated IRE1α generates a potent transcription factor sXBP1 [19] that upregulates enzymes in the lipid biosynthesis pathway [21, 40]. Chlamydia acquire certain essential phospholipids such as phosphatidylcholine [2], cholesterol, and sphingomyelin [3] from host cells because it cannot make them [41]. We hypothesized that activation of the IRE1α pathway of UPR will benefit chlamydia as a source of essential lipids. To verify this hypothesis, the upregulation of phospholipids in C57epi cell cultures infected with chlamydia was analyzed. As shown in Figure 4A, the infection of C57epi cells significantly upregulated phospholipids production at 48 hours (P > .005). In addition, we analyzed the expression levels of ATF4, a transcription factor that activates genes involved in amino acid import, glutathione biosynthesis, and resistance to oxidative stress [15].The results showed transcription factor ATF4 was upregulated during infection (Figure 4B). The activation of ATF4 peaked at 48 hours, which corresponds to the time Chlamydia is completing its developmental cycle [42]. The results indicated that UPR is a major source of essential lipids and nutrients for chlamydia development.
UPR Signaling Pathways Produce Molecules That Prevent Apoptosis and Enhance Host Cell Survival
The mechanism by which chlamydial infection causes host cell resistance to apoptosis [35] (which allows for the initial host survival to ensure inclusion development) is unknown. We investigated the hypothesis that UPR produces key cell survival molecules during chlamydial infection by activation of the c-Jun N-terminal kinase pathway during chlamydial infection. As shown in Figure 5A, c-Jun, a component of the activating protein 1 (AP1) family of transcription factors that are antiapoptotic [24], and MAP-LC3, which promotes autophagy [23] to eliminate cell wastes as a cell survival strategy, were highly upregulated during chlamydial infection. The c-Jun and MAP-LC3 were produced in the IRE1α arm of UPR, as shown by the ability of IRE1α inhibitor to block their upregulation during chlamydial infection (Figure 5A and 5B). Thus, UPR induced during chlamydial infection contributes to the antiapoptotic phenotype of infected cells.
The Role of UPR in Chlamydia Replication and Disease
To directly investigate the role of UPR activation in Chlamydia pathogenesis, we tested the hypothesis that the blockade of the key signaling pathways of UPR will affect Chlamydia replication in vitro and in vivo. As shown in Figure 6, the inhibition of IRE1α RNase activity or PERK kinase activity significantly inhibits the formation Chlamydia inclusions in cultures of C57epi cells (P > .03 and .04, respectively). In vivo, the inhibition of IRE1α RNase activity or PERK kinase activity by intravaginal application of inhibitors to chlamydial-infected mice showed that the inhibition of IRE1α RNase activity resulted in a significant decrease in chlamydial shedding (P > .045). The inhibition of PERK kinase activity also showed a reduction trend in Chlamydia shedding, although statistically insignificant (P > .2) (Figure 7A and 7B). Furthermore, mice treated with the inhibitor of IRE1α RNase activity showed a 30% increase in fertility compared to 0% fertility in infected, nontreated mice (data not shown). The results indicated that UPR activation is essential for chlamydial replication and pathogenesis.
DISCUSSION
The detailed host–pathogen interactions and biochemical pathways that drive the successful intracellular parasitism and inclusion development by Chlamydia are incompletely defined. UPR is a cellular response to ER stress [8, 43], whose major signaling pathways may be exploited by energy and metabolically deficient pathogens to increase ATP and metabolites required for development, similar to rapidly dividing cancer cells [17]. Previous attempts to investigate chlamydial-induced UPR were inconclusive. Thus, the short-lived UPR induced by Simkania negevensis (a Chlamydia-related species), was considered unremarkable [44, 45]. Also, the UPR observed in Chlamydophila pneumoniae–infected, IFN-γ–treated cells was attributed to the cytokine [16, 45]. Thus, the ability of human or animal Chlamydia species to directly induce UPR was uncertain. Besides, the mechanisms by which the host cell augments ATP production, maintains the unidirectional flow of nutrients into the inclusion, and establishes an initial antiapoptotic state that allows for chlamydial development, had remained unclear. Our results indicate conclusively that Chlamydia induces the 3 arms UPR. We confirmed the endonuclease activity of activated IRE1α and the phosphorylation and upregulation of phosphorylated eIF2α on the PERK signaling pathway of UPR [13]. Also, the activation of IRE1α generates a potent transcription factor sXBP1 [19] that upregulates lipid biosyntheses [21, 40]. Chlamydial infection significantly upregulated phospholipid production and ATF4 (a transcription factor that activates genes involved in amino acid import), glutathione biosynthesis, and resistance to oxidative stress [15]. Thus, the activation of the IRE1α pathway benefits chlamydia as a source of essential lipids and metabolites. We demonstrated that the PERK pathway upregulated hexokinase II, a crucial enzyme in the glycolytic pathway for rapid ATP production during substrate-level phosphorylation [39], indicating that UPR increases host cell glucose utilization and ATP synthesis during chlamydial infection.
The host survival is essential for Chlamydia replication, and premature apoptosis prevents inclusion formation [46]. The IRE1α/TRAF2 complex formed through the activation of IRE1α [22] activates c-Jun (a component of the AP1 family of transcription factors that are antiapoptotic), which promotes cell survival through upregulation of the microtubule-associated protein 1 light chain 3 (MAP-LC3) (an inducer of autophagy to eliminate cell wastes as a cell survival strategy) [23] and downregulation of tumor suppressors [24]. We showed that the activation of IRE1α upregulated c-Jun and MAP-LC3, which benefits chlamydia because their antiapoptotic activities support host cell survival. In addition, activated ATF6α inhibits the PERK pathway through its upregulation of p58IPK, which reduces the phosphorylation of eIF2α and the expression of CHOP [28, 29]. The blocking of CHOP, a proapoptotic molecule, ensures the survival of ER-stressed cells [30]. Therefore, ATF6α is a necessary feedback molecule in ER homeostasis and cell survival during UPR. Our findings provide a compelling molecular and biochemical mechanism by which chlamydial infection causes host cell resistance to apoptosis [35]. Last, we directly demonstrated the role of UPR activation in Chlamydia pathogenesis by showing that the inhibition of IRE1α or PERK significantly inhibited the formation of Chlamydia inclusions in vitro, decreased chlamydial shedding in vivo, and partially restored fertility in infected mice.
In conclusion, we verified that UPR is a key mechanism by which Chlamydia derives it supplementary ATP and nutrients, as well as maintain host cell survival that ensure its productive development, leading to the various diseases. The induction of UPR during chlamydial infection may include the extra protein expression (eg, Chlamydia early genes [47]) or the unidirectional flow of ATP and nutrients into the inclusion that cause ER stress, triggering UPR. Alternatively, Chlamydia cytotoxin [48] may induce UPR through binding to BiP [49], like other bacterial inducers [33]. Chlamydia produces a cytotoxin thought to play a role in pathogenesis [48]. Our findings have important implications in therapeutic targeting of chlamydial activators of UPR signaling pathways and pathologic expression of the host’s UPR-related molecules in order to prevent chlamydial diseases.
Notes
Disclaimer. The conclusions in this report are those of the author(s) and do not necessarily represent the official position of the Centers for Disease Control and Prevention(CDC)/the Agency for Toxic Substances and Disease Registry.
All animal protocols were approved by the CDC Institutional Animal Care and Use Committee (IACUC) under Protocol # 2605IGIMOUC-A1. The CDC IACUC is guided by Title 9, Chapter I, Subchapter A—Animal Welfare (USDA Regulations).
Financial support. This work was supported by the Centers for Disease Control and Prevention and Public Health Service grants (AI41231, GM 08248, RR03034, and 1SC1GM098197) from the National Institutes of Health.
Potential conflicts of interest. All authors: No reported conflicts.
All authors have submitted the ICMJE Form for Potential Conflicts of Interest. Conflicts that the editors consider relevant to the content of the manuscript have been disclosed.
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