Table 1.
Minor allele frequencies of the FKBP5 SNPs for SHIP-2 and SHIP-TREND-OMICS
| Minor allele frequency (%) | Imputation quality | ||||||
|---|---|---|---|---|---|---|---|
| Common allele | Minor allele | Combined sample | SHIP-2 | SHIP-TREND-OMICS | SHIP-2 | SHIP-TREND-OMICS | |
| rs1360780a | C | T | 30.45 | 30.04 | 31.37 | 1.00 | 1.00 |
| rs4713904a | T | C | 31.32 | 31.91 | 30.19 | 0.99 | 1.00 |
| rs2817035a | G | A | 30.27 | 30.77 | 29.30 | 0.95 | 0.99 |
| rs2817032a | T | C | 30.21 | 30.74 | 29.20 | 1.00 | 1.00 |
| rs9368882a | G | A | 26.80 | 27.49 | 25.50 | 0.98 | 0.99 |
| rs6910300a | G | A | 23.37 | 23.83 | 22.68 | 0.93 | 0.97 |
| rs3798346a | A | G | 23.25 | 23.66 | 22.47 | 0.97 | 0.99 |
| rs55987213a | C | T | 20.64 | 20.42 | 21.06 | 0.99 | 0.99 |
| rs12197246 | G | A | 19.43 | 19.55 | 16.71 | 0.98 | 0.99 |
| rs55694295 | C | T | 18.93 | 18.82 | 19.13 | 0.99 | 0.99 |
| rs12200498 | G | A | 18.57 | 18.69 | 18.35 | 1.00 | 1.00 |
| rs10947565 | G | A | 18.48 | 18.58 | 18.30 | 0.99 | 0.99 |
| rs6926133 | C | A | 17.38 | 17.16 | 17.78 | 1.00 | 1.00 |
| rs13215797 | C | T | 16.81 | 16.25 | 17.88 | 0.77 | 0.92 |
| rs9470079 | G | A | 16.71 | 17.00 | 16.16 | 0.86 | 0.99 |
| rs7740395 | T | C | 16.59 | 16.08 | 17.57 | 0.96 | 0.99 |
| rs4713899 | G | A | 15.70 | 15.51 | 16.06 | 1.00 | 1.00 |
| rs7771727 | G | A | 13.75 | 13.66 | 13.92 | 0.99 | 1.00 |
| rs72921231 | T | C | 10.30 | 10.67 | 9.59 | 1.00 | 1.00 |
| rs72913423 | A | G | 10.09 | 10.35 | 9.59 | 0.99 | 1.00 |
| rs72913412 | G | A | 10.09 | 10.35 | 9.59 | 0.99 | 0.99 |
| rs2294807 | C | T | 10.05 | 10.32 | 9.54 | 1.00 | 1.00 |
| rs74709645 | C | T | 5.79 | 5.95 | 5.47 | 0.79 | 0.97 |
aSNPs used in the interaction effect analyses