Table 1.
Assembly statistics of four viral-metagenomic samples. SRA and sample IDs, RNA selection methods, number of reads in million, and the number of assembled contigs and predicted proteins are reported. The number of viral RNA-dependent-RNA-polymerase (vRdRp) domains, the ratio of viral protein to total proteins, as well as the number of complete viral genomes, are also indicated.
| SRA ID | Sample ID | RNA Selection Method | No. of Reads (M) | No. Of Assembled Contig | No. of Predicted Protein | No. of vRdRp | Ratio of Viral Proteins | No. of Complete Genomes * |
|---|---|---|---|---|---|---|---|---|
| SRR3401648 | SAMN04625952 | Ribo-depletion | 99.7 | 96,102 | 45,343 | 30 | 0.00007 | 2 |
| SRR3401653 | polyA-selection | 58.3 | 120,399 | 38,498 | 129 | 0.00034 | 9 | |
| SRR3401753 | SAMN04625958 | Ribo-depletion | 47.9 | 180,272 | 48,687 | 43 | 0.00009 | 6 |
| SRR3401755 | polyA-selection | 60.3 | 105,611 | 14,661 | 54 | 0.00037 | 4 | |
| SRR7637587 | SAMN09760011 | Ribo-depletion | 54.1 | 156,166 | 41,785 | 46 | 0.00011 | 5 |
| SRR8237210 | polyA-selection | 52.0 | 93,172 | 40,301 | 10 | 0.00002 | 0 |
* additional details on the complete viral genomes are reported in Table 2.