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. 2019 Mar 7;11(3):233. doi: 10.3390/v11030233

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© 2019 by the authors.

Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).

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Maximum Nodaviridae likelihood phylogenetic tree based on part of the capsid protein, including 239 species and Tetranychus urticae-associated nodaviruses (in bold). The alignment of 229 amino acids in length was produced using MUSCLE 3.7 (16 iterations) and was ungapped by hand. The tree was mid-point rooted. Bootstrap values are indicated at each node. Scale bar corresponds to amino acid substitutions per site. Genomic organization of Tetranychus urticae-associated nodaviruses is also indicated. Grey arrows and rectangles: predicted open reading frames (ORF), Light grey: putative NS; dark grey: putative capsid protein (CP). Arrow: complete ORF; Rectangle: truncated ORF.

Maximum Nodaviridae likelihood phylogenetic tree based on part of the capsid protein, including 239 species and Tetranychus urticae-associated nodaviruses (in bold). The alignment of 229 amino acids in length was produced using MUSCLE 3.7 (16 iterations) and was ungapped by hand. The tree was mid-point rooted. Bootstrap values are indicated at each node. Scale bar corresponds to amino acid substitutions per site. Genomic organization of Tetranychus urticae-associated nodaviruses is also indicated. Grey arrows and rectangles: predicted open reading frames (ORF), Light grey: putative NS; dark grey: putative capsid protein (CP). Arrow: complete ORF; Rectangle: truncated ORF.