Abstract
Background
Acinetobacter baumannii is a common cause of healthcare-associated infections. Carbapenem-resistant (CR) A baumannii is a significant threat globally. We used a large reference laboratory database to study the epidemiology of A baumannii in children in the United States.
Methods
Antimicrobial susceptibility data from The Surveillance Network were used to phenotypically identify antibiotic resistance in A baumannii isolates in children 1–17 years of age between January 1999 and July 2012. Logistic regression analysis was used to calculate trends in the prevalence of antibiotic resistance in A baumannii. Isolates from infants (<1 year old) were excluded.
Results
The crude proportion of cephalosporin-resistant (CephR) A baumannii increased from 13.2% in 1999 to 23.4% in 2012 with a peak of 32.5% in 2008, and the proportion of CR A baumannii increased from 0.6% in 1999 to 6.1% in 2012 with a peak of 12.7% in 2008. From 1999 to 2012, the proportion of CephR and CR A baumannii increased each year by 3% and 8%, respectively (CephR odds ratio [OR] = 1.03, 95% confidence interval [CI], 1.01–1.04; CR OR = 1.08, 95% CI, 1.05–1.12); however, after 2008, a significant decrease in trend was observed (CephR OR = 0.78, 95% CI, 0.71–0.87; CR OR = 0.73, 95% CI, 0.62–0.86), but resistance remained higher than baseline (1999).
Conclusions
Overall, between 1999 and 2012, CephR and CR A baumannii isolates increased in children; however, a decreasing trend was observed after 2008.There is a need for ongoing surveillance of A baumannii infections and continued assessment of effective prevention strategies in vulnerable populations.
Keywords: Acinetobacter baumannii, carbapenems, child, drug resistance, epidemiology
Acinetobacter is a complex genus of Gram-negative bacteria that cause infections associated with significant morbidity and mortality. Acinetobacter baumannii is the most common human pathogen of the genus, and it is well known for its ability to resist desiccation and persist in the environment, which facilitates transmission in healthcare settings [1]. The National Healthcare Safety Network reported in 2009–2010 that A baumannii was responsible for 1.8% of all healthcare-associated infections (HAIs), and it is estimated that there are 45000 cases of Acinetobacter infections per year in the United States and 1 million annual cases globally [1–3]. The Centers for Disease Control and Prevention (CDC) noted in a 2013 Antibiotic Resistance Threat report that infection with multidrug resistant (MDR) Acinetobacter is a serious and significant antibiotic resistant threat, and that there are 7300 MDR Acinetobacter infections in the United States each year, resulting in 500 deaths [4]. The most common clinical manifestations of A baumannii infection are healthcare-associated pneumonia and bacteremia; however, other well described infection types in adults and children include urinary tract infections, wound infections, meningitis, endocarditis, osteomyelitis, and endophthalmitis [2, 5, 6].
The virulence properties of Acinetobacter spp are numerous and include capsular polysaccharide enabling immune evasion, allowing for a high density of bacteria that enact lipopolysaccharide Toll-like receptor 4-mediated sepsis. However, the major driver of poor outcomes due to Acinetobacter infection is antibiotic resistance, which complicates the selection of effective empiric therapy because genus identification often precedes susceptibility results [1, 6]. Acinetobacter has intrinsic low permeability to antibiotics due to reduced outer membrane porins, and it contains a major resistance genomic island comprising 45 resistance genes, enabling resistance to multiple antibiotic classes [1]. β-lactam antibiotics are common empiric therapy options for A baumannii, and β-lactam resistance (including penicillins, cephalosporins and carbapenems) is due to multiple mechanisms such as chromosomal, plasmid- or transposon-encoded β-lactamases including class B metallo-β-lactamases, class C AmpC cephalosporinases, and class D OXA carbapenemases. Broad-spectrum β-lactamases in combination with active efflux systems, low outer membrane permeability, the absence of PBP-2, and transposon-mediated aminoglycoside, sulfonamide, tetracycline resistance mechanisms have resulted in a perfect storm of highly resistant bacterial populations increasingly being reported worldwide [1, 7–10].
Despite rising rates of antibiotic resistance and concerning numbers of drug-resistant A baumannii infections, the current pediatric literature is limited to single-center experiences, and there have been no pediatric studies assessing national or regional trends in antibiotic resistance in A baumannii in children. In this study, we investigated the epidemiology of A baumannii isolates from children, excluding those under 1 year of age, and explored trends in antibiotic resistance over a time period of 13.5 years.
METHODS
Antibiotic susceptibility data were obtained from The Surveillance Network Database-USA ([TSN] Eurofin-Medinet, Herndon, VA). The database has been used previously to characterize national antibiotic susceptibility trends [11–13]. In brief, the network consisted of clinical microbiology laboratories that served approximately 300 hospitals. These hospitals were selected to be geographically representative of the 9 US Census Bureau regional divisions, hospital size, and patient population. Laboratories that were included in TSN submitted results from all routine antimicrobial susceptibility testing performed. Clinical Laboratory Standards Institute (CLSI) guidelines were adopted by the reporting facilities at the time of testing and reflect the susceptibilities that were reported to clinicians [14]. Individual laboratory data were validated electronically and merged into a central database.
The database included records with the following information: the organism identified, tested drug and susceptibility result (susceptible, intermediate-resistant, or resistant), the specimen source of the isolate (blood, urine, wound, respiratory, skin), patient characteristics (age, sex), the patient location setting in which the patient sample was collected outpatient (ambulatory), inpatient intensive care unit (ICU), inpatient (non-ICU) and long-term care settings, the geographical location of the facility where the specimen was collected (state, region), and the date of the drug susceptibility test.
Our analysis considered A baumannii isolates obtained from all pediatric patients (ages 1 to 17) who were in ambulatory, ICU, non-ICU, and long-term care settings between January 1, 1999 and June 30, 2012. We excluded isolates obtained from patients <1 year old in this study because the epidemiology of A baumannii in neonates, cared for in the neonatal ICU, likely differs from older children. Resistance rates of A baumannii to the following 6 classes of antibiotics were examined: cephalosporins (cefepime, ceftazidime), β-lactam/β-lactamase inhibitor combination (piperacillin, piperacillin/tazobactam), carbapenems (imipenem, meropenem, and doripenem), fluoroquinolones (ciprofloxacin or levofloxacin), aminoglycosides (gentamicin, tobramycin, or amikacin), or sulbactam (ampicillin-sulbactam). Individual class resistance rates of A baumannii were defined as nonsusceptible to at least 1 of the antibiotic agents in the respective class. For example, cephalosporin-resistant (CephR) A baumannii was defined as isolates that were nonsusceptible to at least 1 of the 2 agents (ceftazidime, cefepime) in the cephalosporin class, and carbapenem-resistant (CR) A baumannii was defined as isolates that were nonsusceptible to at least 1 of the 3 agents (imipenem, meropenem, doripenem) in the carbapenem class. In addition, MDR A baumannii was defined using CDC criteria, which includes nonsusceptibility to agent(s) in at least 3 of the following 6 antimicrobial classes: cephalosporins (cefepime, ceftazidime), β-lactam/β-lactamase inhibitor combination (piperacillin, piperacillin/tazobactam), carbapenems (imipenem, meropenem, and doripenem), fluoroquinolones (ciprofloxacin or levofloxacin), aminoglycosides (gentamicin, tobramycin, or amikacin) or sulbactams (ampicillin-sulbactam) [15].
Only the first isolate from a patient was included in the analysis. The frequency of individual class resistance (for example, resistance to cephalosporin class means nonsusceptibility to at least 1 of the 2 antibiotics ceftazidime or cefepime) and MDR A baumannii are reported as the proportion of resistant isolates out of total tested isolates in respective classes. In addition, we examined the susceptibility of A baumannii isolates to all individual antibiotics in each of the 6 classes. During the study period, CLSI breakpoints were changed for amikacin, gentamicin, and tobramycin in 2008. An intermediate category was introduced in 2008 for these drugs, and the previous resistant minimum inhibitory concentration (MIC) values were categorized to intermediate. However, although we considered intermediate isolates as resistant, the break point changes would not affect the resistance trends.
Unadjusted trends in the prevalence of individual class-resistant and MDR A baumannii were examined using logistic regression. For those classes with a significant increase in unadjusted analysis, multivariable logistic regression analysis was used to estimate the prevalence adjusting for time (year), patient characteristics (including age group [1–5, 6–12, and 13–17 years old]), sex, isolate specimen source (blood, urine, wound, respiratory, and skin), patient location (ICU, inpatient non-ICU, outpatient and long-term care facilities), and geographic region of the healthcare facilities (East North Central, East South Central, Mid-Atlantic, Mountain, New England, Pacific, South Atlantic, West North Central, and West South Central). A P value of <.05 was considered to be statistically significant. Confidence intervals (CIs) were generated using Wilson score CI method. Data were analyzed using Stata 14.1 (StataCorp, College Station, TX) programming language.
RESULTS
Overall, 6246 pediatric A baumannii isolates were identified in the database between 1999 and 2012. The isolates were more often from outpatients (2779 isolates, 44.48%), respiratory source (2761 isolates, 44.18%), 1- to 5-year-old patients (2374 isolates, 37.99%), or males (3337 isolates, 53.39%) (Table 1). Of the 9 regions in the dataset, the largest number of isolates came from the South Atlantic region (1238 isolates, 19.83%).
Table 1.
Distribution of Carbapenem- and Cephalosporin-Resistant Acinetobacter baumannii Isolates in Children 1–17 Years of Age, 1999–2012a
Characteristic | Total Isolates | No. of Isolates Tested Against Carbapenems | No. of CRb Isolates (% of Isolates Tested Against Carbapenems) | No. of Isolates Tested Against Cephalosporins | No. of CephRc Isolates (% of Total Tested Against Cephalosporins) |
---|---|---|---|---|---|
N = 6246 | N = 5605 | N = 343 | N = 5876 | N = 1339 | |
Patient Setting | |||||
Inpatient | 2269 | 2042 | 179 (8.8%) | 2170 | 592 (27.3%) |
Inpatient - ICU | 1105 | 1043 | 88 (8.4%) | 1045 | 325 (31.1%) |
Outpatient | 2779 | 2429 | 62 (2.6%) | 2572 | 393 (15.3%) |
Unknown | 46 | 44 | 6 (13.6%) | 42 | 10 (23.8%) |
Long-term care | 47 | 47 | 8 (17%) | 47 | 19 (40.4%) |
Patient Sex | |||||
Male | 3337 | 3014 | 230 (7.6%) | 3138 | 783 (25%) |
Females | 2824 | 2512 | 109 (4.3%) | 2658 | 541 (20.4%) |
Unknown | 85 | 79 | 4 (5.1%) | 80 | 15 (18.8%) |
Specimen Source | |||||
Respiratory | 2761 | 2557 | 203 (7.9%) | 2620 | 738 (28.2%) |
Wound | 1567 | 1435 | 82 (5.7%) | 1506 | 300 (19.9%) |
Urine | 901 | 694 | 33 (4.8%) | 769 | 137 (17.8%) |
Blood | 873 | 795 | 23 (2.9%) | 846 | 147 (17.4%) |
Skin | 144 | 124 | 2 (1.6%) | 136 | 18 (13.2%) |
Age Group | |||||
1–5 | 2374 | 2132 | 95 (5.5%) | 2266 | 456 (20.1%) |
6–12 | 1659 | 1475 | 52 (3.5%) | 1544 | 300 (19.4%) |
13–17 | 2213 | 1998 | 196 (9.8%) | 2066 | 583 (28.2%) |
Regiond | |||||
South Atlantic | 1238 | 1100 | 56 (5.1%) | 1195 | 253 (21.1%) |
Mid-Atlantic | 1071 | 983 | 90 (9.2%) | 1026 | 273 (26.6%) |
East North Central | 955 | 869 | 27 (3.1%) | 817 | 163 (20%) |
West South Central | 932 | 860 | 50 (5.8%) | 854 | 177 (20.7%) |
Pacific | 803 | 722 | 54 (7.5%) | 774 | 200 (25.8%) |
West North Central | 612 | 489 | 45 (9.2%) | 604 | 156 (25.8%) |
East South Central | 270 | 247 | 7 (2.8%) | 247 | 43 (17.4%) |
Mountain | 206 | 181 | 11 (6.1%) | 201 | 54 (26.9%) |
New England | 159 | 154 | 3 (1.9%) | 158 | 20 (12.7%) |
Abbreviations: CephR, cephalosporin resistant; CR, carbapenem resistant; ICU, intensive care unit.
aSource: The Surveillance Network-USA Database.
bCR means nonsusceptible to at least 1 of the 3 agents (imipenem, meropenem, doripenem).
cCephR means nonsusceptible to at least 1 of the 2 agents (cefepime, ceftazidime).
dEast North Central region includes the following states: Illinois, Indiana, Michigan, Ohio, and Wisconsin. East South Central region includes the following states: Alabama, Kentucky, Mississippi, and Tennessee. Mid-Atlantic region includes the following states: New Jersey, New York, and Pennsylvania. Mountain region includes the following states: Arizona, Colorado, Idaho, Montana, New Mexico, Utah, and Wyoming. New England region includes the following states: Connecticut, Maine, Massachusetts, New Hampshire, Rhode Island, and Vermont. Pacific region includes the following states: Alaska, California, Hawaii, Islands, Oregon, and Washington. South Atlantic includes the following states: Delaware, Florida, Georgia, Maryland, North Carolina, South Carolina, Virginia, and West Virginia. West North Central region includes the following states: Iowa, Kansas, Minnesota, Missouri, North Dakota, Nebraska, and South Dakota. West South Central region includes the following states: Arkansas, Louisiana, Oklahoma, and Texas.
When we compared A baumannii resistance proportions in 1999 and 2012 for various classes, we noted that resistance to carbapenems (0.6% in 1999 vs 6.1% in 2012) and cephalosporins (13.2% vs 23.4%) increased with a peak percentage of resistance in 2008 (CR, 12.7%; CephR, 32.5%) (Figure 1), whereas the resistance proportion decreased for β-lactam/β-lactamase inhibitor combination (23.4% vs 18.9%), fluoroquinolones (14.5% vs 9.5%), sulbactams (14.3% vs 8.8%), and MDR isolates (16.1% vs 14.3%) (Supplementary Table 1). Acinetobacter baumannii resistance proportions for aminoglycosides were identical in 1999 (17.6%) and 2012 (17.6%).
Figure 1.
Carbapenem- and cephalosporin-resistant Acinetobacter baumannii in the United States: 1999–2012.
Analysis of trends using logistic regression showed a significant increase in the proportion of both CR (0.6%–6.1%; P = .001) and CephR (13.2%–23.4%; P = .036) A baumannii isolates between 1999 and 2012. With every year, the proportion of CR A baumannii isolates increased by 8% (odds ratio [OR] = 1.08 [95% CI, 1.05–1.12]), whereas the proportion of CephR A baumannii isolates increased by 3% (OR = 1.03 [95% CI, 1.01–1.04]). However, there was a significant decrease in the proportion of CR (12.7%–6.1%; OR = 0.73 [95% CI, 0.62–0.86]) and CephR (32.5%–23.4%; OR = 0.78 [95% CI, 0.71–0.87]) A baumannii isolates between 2008 and 2012. Acinetobacter baumannii resistance rates to 3 other classes (β-lactam/β-lactamase inhibitor combination, aminoglycosides, and sulbactams) and MDR A baumannii rates showed no significant change (increase or decrease) over the study period, except for fluoroquinolones, which showed significant decrease. With every year, the proportion of fluoroquinolone-resistant A baumannii isolates decreased by 2% (OR = 0.98 [95% CI, 0.96–0.99]; P = .04). However, the odds of resistance significantly decreased between 2008 and 2012 for all 4 classes of antibiotics.
Of the total isolates tested for CR and CephR isolates, the highest percentage of CR and CephR isolates were from respiratory sources (203, 7.9% CR; 738, 28.2% CephR), from age category 13–17 (196, 9.8% CR; 583, 28.2% CephR), from males (230, 7.6% CR; 783, 25% CephR), from the long-term care setting (8, 17% CR; 19, 40.4% CephR), and from the Mid-Atlantic region (90, 9.2% CR; 273; 26.6% CephR) (Table 1).
After the data were adjusted for year (including years after 2008), patient, and isolate characteristics, patients in the age group 13–17 years had greater odds of the CR and CephR phenotype among A baumannii isolates (OR = 2.32 [95% CI, 1.77–3.04]; OR= 1.54 [95% CI, 1.32–1.78]), compared with 1- to 5-year-old children (Table 2). Among patient locations, patients from long-term care facilities had the greater odds of the CR and CephR phenotype (OR = 5.82 [95% CI, 2.49–14.60]; OR = 3.33 [95% CI, 1.80–6.13]), compared with outpatients. Among specimen sources, respiratory specimens had the greater odds of CR and CephR phenotype (OR = 1.33 [95% CI, 0.89–2.00]; OR = 1.56 [95% CI, 1.26–1.94]), compared with specimens obtained from urine. Among the geographic regions, the Mid-Atlantic Region had greater odds of CR phenotype (OR = 2.80 [95% CI, 1.75–4.46]), whereas the Mountain region had greater odds of CephR phenotype (OR = 1.47 [95% CI, 0.96–2.03]), compared with the East North Central region of United States. Acinetobacter baumannii resistance to amikacin showed the highest absolute increase in resistance rates (9.6% in 1999–2003 to 16.6% in 2008–2012), whereas imipenem had the lowest resistance rates among all antibiotics tested (Supplementary Table 2).
Table 2.
Logistic Model of Carbapenem-Resistant and Cephalosporin-Resistant Acinetobacter baumannii Adjusted for Patient and Isolate Characteristics in Children 1–17 Years of Age, 1999–2012
Isolate Characteristic | Carbapenem-Resistant A baumannii (n = 5605) | Cephalosporin-Resistant A baumannii (n = 5876) | ||
---|---|---|---|---|
aOR (95% CI) | P Value | aOR (95% CI) | P Value | |
Time (all 13 years) | 1.12 (1.15–1.29) | <.001 | 1.104 (1.072–1.136) | <.001 |
Time (2008–2012) | 0.75 (0.65–0.86) | <.001 | 0.79 (0.73–0.86) | <.001 |
Patient Gender (reference, female) | ||||
Male | 1.78 (1.39–2.26) | <.001 | 1.28 (1.13–1.46) | <.001 |
Unknown | 3.16 (1.03–9.68) | .044 | 1.42 (0.78–2.58) | .250 |
Age, Years (reference, 1–5) | ||||
6–12 | 0.85 (0.60–1.21) | .371 | 1.05 (0.89–1.24) | .587 |
13–17 | 2.32 (1.77–3.04) | <.001 | 1.54 (1.32–1.78) | <.001 |
Patient Location (reference, outpatient) | ||||
Inpatient | 3.60 (2.64–5.92) | <.001 | 2.05 (1.77–2.39) | <.001 |
Inpatient-ICU | 3.17 (2.19–4.59) | <.001 | 2.13 (1.77–2.57) | <.001 |
Long-term care | 5.82 (2.49–14.60) | <.001 | 3.33 (1.80–6.13) | <.001 |
Unknown | 8.79 (3.35–22.33) | <.001 | 1.92 (0.92–3.99) | .077 |
Specimen Source (reference, urine) | ||||
Blood | 0.47 (0.27–0.83) | .009 | 0.85 (0.65–1.11) | .223 |
Respiratory | 1.33 (0.89–2.00) | .168 | 1.56 (1.26–1.94) | <.001 |
Skin | 0.41 (0.09–1.77) | .231 | 0.79 (0.4–1.36) | .389 |
Wound | 1.14 (0.74–1.75) | .550 | 1.10 (0.88–1.38) | .434 |
Region (reference, East North Central) | ||||
East South Central | 0.73 (0.31–1.73) | .472 | 0.70 (0.48–1.03) | .067 |
Mid-Atlantic | 2.80 (1.75–4.46) | <.001 | 1.30 (1.03–1.65) | .026 |
Mountain | 1.94 (0.91–4.13) | .087 | 1.47 (0.96–2.03) | .077 |
New England | 0.35 (0.10–1.19) | .094 | 0.47 (0.24–0.67) | .004 |
Pacific | 1.71 (1.04–2.82) | .034 | 1.19 (0.92–1.51) | .176 |
South Atlantic | 1.32 (0.81–2.15) | .272 | 1.01 (0.75–1.20) | .938 |
West North Central | 2.23 (1.33–3.75) | .003 | 1.21 (0.87–1.49) | .170 |
West South Central | 1.37 (0.82–2.27) | .228 | 0.84 (0.63–1.05) | .167 |
Abbreviations: aOR, adjusted odds ratio; CI, confidence interval; ICU, intensive care unit.
DISCUSSION
Overall, we observed significant increases in the prevalence of CR and CephR phenotypes among A baumannii isolates from US children between 1999 and 2012, which was similar to increasing trends we found in other notoriously drug-resistant Gram-negative bacilli isolates in children during the same time period [11, 13, 16]. However, there was a biphasic trend. The prevalence of CR A baumannii and CephR A baumannii isolates increased until 2008, and then a decreasing trend was observed, but resistance remained proportionally higher than the early study period. Children admitted to inpatient settings (both wards and ICU) and long-term care settings, between the ages of 13 and 17 years, and respiratory tract isolates had greater odds of CR and CephR A baumannii. Resistance varied by region. The Mid-Atlantic region of the United States had greater odds of CR A baumannii, whereas the Mountain region had greater odds of CephR A baumannii. Although fluoroquinolone resistance in A baumannii isolates decreased during the time period, the only relevant current indication for quinolone use in the pediatric population is for complex urinary tract infections, which did not represent the majority of the increasing drug-resistant infections, which were respiratory in nature. Of additional concern was the absolute increase in drug resistance in other traditionally reserved second-line antibiotics such as amikacin.
The decreasing trend in the prevalence of CR A baumannii and CephR A baumannii isolates after 2008 may be attributable (1) to calls for improvements in infection control practices to combat MDR A baumannii during this time period and (2) the Infectious Diseases Society of America and the Society for Healthcare Epidemiology expert guidance released in 2007 advising implementation of antimicrobial stewardship programs in acute care settings [17, 18]. Improvements in infection control practices and implementation of antimicrobial stewardship programs in acute care settings would also explain the decrease in the proportion of inpatient isolates (both wards and ICU), which are associated with higher odds of resistance compared with outpatient isolates after the year 2008.
Disruption of anatomic barriers due to catheterization, endotracheal intubation, surgery, or trauma is the major driving force for A baumannii infection, and the most common infections are healthcare-associated pneumonia and bacteremia [1]. In our study, we did not find an increase in resistant A baumannii in blood isolates; however, the findings in this analysis of increasing CR and CephR A baumannii in respiratory isolates are consistent with US CDC data describing high HAI rates due to pneumonia [19].
Because ICUs and long-term care facilities harbor critically and chronically ill children and involve high antibiotic and device usage rates, it is not surprising that we found greater odds of CR and CephR A baumannii isolates in these settings. The higher odds of CR and CephR A baumannii in inpatient non-ICU settings is not as easily explained, because patient populations traditionally hospitalized for prolonged periods such as those with suppression or depletion of leukocytes are not thought to represent a significant proportion of those with A baumannii infections.
Acinetobacter can possess an XDR phenotype, which is defined as “resistant to all FDA-approved, systemically active antibacterial agents except for those known to be substantially more toxic than or inferior in efficacy to alternative agents when used to treat susceptible organisms” [20]. In adults, the CR A baumannii phenotype is typically XDR, and it has been associated with plasmid- and transposon-based carbapenemases such as the Class D carbapenemases and the Class B metallo-β-lactamases, which typically co-occur with additional resistance genes. We did not find an increase in MDR or XDR A baumannii in our study. It is possible that the CR phenotype in our isolates is due to a combination of intrinsic resistance mechanisms and selection pressure for the CR phenotype due to broad antibiotic exposure; it is also possible that the A baumannii was misidentified and represents another species of less virulent Acinetobacter, because, until the recent availability of newer diagnostic platforms, it was difficult for some microbiology laboratories to differentiate A baumannii from Acinetobacter calcoaceticus [1, 21, 22].
Acinetobacter baumannii often has a polyclonal endemicity in healthcare settings. Therefore, antimicrobial stewardship programs and comprehensive infection control measures (including ventilator associated complication bundles) may be equally necessary to control spread and reduce length of stay and lower mortality due to antibiotic-resistant A baumannii in both endemic and outbreak settings [18, 23–26]. Revolutionary advances in rapid molecular diagnostics may assist in the differentiation of patients who might more definitively benefit from antibiotic therapy and yield the correct identification of A baumannii from other less pathogenic species [27–31].
Our study has several limitations. First, as with any laboratory-based surveillance, we could not differentiate between true infection and colonization. Second, we did not have MIC values. Although CLSI methods were applied by participating laboratories, some margin of uncertainty could be introduced due to local discrepancies. Third, we excluded isolates from Nevada for the entire study period due to an unusually high number of CR isolates in 2006 (51%) and 2007 (49%) from participating laboratories. We could not find any published reports of CR A baumannii outbreak for these 2 years in Nevada. From 2009, the participating laboratories in Nevada did not report data into TSN. Because we could not establish a reason for this unusually high resistance rate, we were concerned about the reliability of those data and excluded the isolates. Fourth, the number of laboratories reporting data in the final years of study was reduced. The decrease in the prevalence of CR A baumannii and CephR A baumannii after 2008 could be attributed to decrease in the laboratories reporting data. However, we would expect a uniform reduction in all isolates; instead, we observed a selective reduction in inpatient isolates. This reduction in inpatient isolates could be attributed to improved infection control practices and/or antimicrobial stewardship programs, or it could be that hospitals contributing higher number isolates from settings were not represented after 2008. Finally, we do not have more recent data (beyond 2012) because TSN stopped collecting data after 2012; however, these represent the only national level data available.
CONCLUSIONS
Carbapenem-resistant and CephR A baumannii infections are a significant threat to all patients, including children. Although there was decreasing prevalence of CR and CephR A baumannii isolates between 2008 and 2012, they remain higher than baseline. Our study highlights the need for continued surveillance of A baumannii infections in children and continued assessment of effective prevention strategies in vulnerable populations.
Supplementary Material
Note
Acknowledgments. We thank Dr. Robert A. Bonomo for guidance and Mr. Nicholas Moore for assistance.
Financial support. This study was funded by the National Institutes of Health (Grant K08AI112506), the Global Antibiotic Resistance Partnership (funded by the Bill & Melinda Gates Foundation), and the Health Grand Challenges Program at Princeton University.
Disclaimer. This content is solely the responsibility of the authors and does not necessarily represent the official views of the National Institutes of Health.
Potential conflicts of interest. All authors: No reported conflicts of interest. All authors have submitted the ICMJE Form for Disclosure of Potential Conflicts of Interest.
References
- 1. Wong D, Nielsen TB, Bonomo RA, et al. Clinical and pathophysiological overview of acinetobacter infections: a century of challenges. Clin Microbiol Rev 2017; 30:409–47. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 2. Sievert DM, Ricks P, Edwards JR, et al. Antimicrobial-resistant pathogens associated with healthcare-associated infections: summary of data reported to the National Healthcare Safety Network at the Centers for Disease Control and Prevention, 2009–2010. Infect Control Hosp Epidemiol 2013; 34:1–14. [DOI] [PubMed] [Google Scholar]
- 3. Spellberg B, Rex JH. The value of single-pathogen antibacterial agents. Nat Rev Drug Discov 2013; 12:963. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 4. Center for Disease Control and Prevention. Antibiotic Resistance Threats in the United States, 2013. Available at: https://www.cdc.gov/drugresistance/pdf/ar-threats-2013-508.pdf. Accessed November 9, 2017. [Google Scholar]
- 5. Hu J, Robinson JL. Systematic review of invasive Acinetobacter infections in children. Can J Infect Dis Med Microbiol 2010; 21:83–8. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6. Munoz-Price LS, Weinstein RA. Acinetobacter infection. N Engl J Med 2008; 358:1271–81. [DOI] [PubMed] [Google Scholar]
- 7. Vila J, Martí S, Sánchez-Céspedes J. Porins, efflux pumps and multidrug resistance in Acinetobacter baumannii.J Antimicrob Chemother 2007; 59:1210–5. [DOI] [PubMed] [Google Scholar]
- 8. Sato K, Nakae T. Outer membrane permeability of Acinetobacter calcoaceticus and its implication in antibiotic resistance. J Antimicrob Chemother 1991; 28:35–45. [DOI] [PubMed] [Google Scholar]
- 9. Adams MD, Goglin K, Molyneaux N, et al. Comparative genome sequence analysis of multidrug-resistant Acinetobacter baumannii. J Bacteriol 2008; 190:8053–64. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 10. Blackwell GA, Hamidian M, Hall RM. IncM plasmid R1215 is the source of chromosomally located regions containing multiple antibiotic resistance genes in the globally disseminated Acinetobacter baumannii GC1 and GC2 clones. mSphere 2016; 1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 11. Logan LK, Braykov NP, Weinstein RA, Laxminarayan R. Extended-spectrum β-lactamase–producing and third-generation cephalosporin-resistant Enterobacteriaceae in children: trends in the United States, 1999–2011. J Pediatric Infect Dis Soc 2014; 3:320–8. [DOI] [PubMed] [Google Scholar]
- 12. Braykov NP, Eber MR, Klein EY, et al. Trends in resistance to carbapenems and third-generation cephalosporins among clinical isolates of Klebsiella pneumoniae in the United States, 1999–2010. Infect Control Hosp Epidemiol 2013; 34:259–68. [DOI] [PubMed] [Google Scholar]
- 13. Logan LK, Renschler JP, Gandra S, et al. Carbapenem-resistant Enterobacteriaceae in children, United States, 1999–2012. Emerg Infect Dis 2015; 21:2014–21. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 14. Clinical and Laboratory Standards Institute. Performance Standards for Antimicrobial Susceptibility Testing. CLSI M100-S20U. Wayne, PA: Clinical and Laboratory Standards Institute, 2010. [Google Scholar]
- 15. Center for Disease Control and Prevention. Multidrug-Resistant Organism & Clostridium difficile Infection (MDRO/CDI) Module Available at: https://www.cdc.gov/nhsn/PDFs/pscManual/12pscMDRO_CDADcurrent.pdf. Accessed 23 January 2017.
- 16. Logan LK, Gandra S, Mandal S, et al. Multidrug- and carbapenem-resistant Pseudomonas aeruginosa in children, United States, 1999–2012. J Pediatric Infect Dis Soc 2017; 6:352–9. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 17. Eliopoulos GM, Maragakis LL, Perl TM. Acinetobacter baumannii: epidemiology, antimicrobial resistance, and treatment options. Clin Infect Dis 2008; 46:1254–63. [DOI] [PubMed] [Google Scholar]
- 18. Dellit TH, Owens RC, McGowan JE Jr, et al. Infectious Diseases Society of America and the Society for Healthcare Epidemiology of America guidelines for developing an institutional program to enhance antimicrobial stewardship. Clin Infect Dis 2007; 44:159–77. [DOI] [PubMed] [Google Scholar]
- 19. Magill SS, Edwards JR, Bamberg W, et al. Multistate point-prevalence survey of health care-associated infections. N Engl J Med 2014; 370:1198–208. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 20. Infectious Diseases Society of America. White paper: recommendations on the conduct of superiority and organism-specific clinical trials of antibacterial agents for the treatment of infections caused by drug-resistant bacterial pathogens. Clin Infect Dis 2012; 55:1031–46. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 21. Jeong S, Hong JS, Kim JO, et al. Identification of acinetobacter species using matrix-assisted laser desorption ionization-time of flight mass spectrometry. Ann Lab Med 2016; 36:325–34. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 22. Toh BE, Paterson DL, Kamolvit W, et al. Species identification within Acinetobacter calcoaceticus-baumannii complex using MALDI-TOF MS. J Microbiol Methods 2015; 118:128–32. [DOI] [PubMed] [Google Scholar]
- 23. Sunenshine RH, Wright MO, Maragakis LL, et al. Multidrug-resistant Acinetobacter infection mortality rate and length of hospitalization. Emerg Infect Dis 2007; 13:97–103. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 24. Cheon S, Kim MJ, Yun SJ, et al. Controlling endemic multidrug-resistant Acinetobacter baumannii in intensive care units using antimicrobial stewardship and infection control. Korean J Intern Med 2016; 31:367–74. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 25. Manchanda V, Sanchaita S, Singh N. Multidrug resistant Acinetobacter. J Glob Infect Dis 2010; 2:291–304. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 26. DeTorres O, DeWindt S. Antimicrobial stewardship can lower the mortality from Acinetobacter infections. Int J Infect Dis 2014; 21:211. [Google Scholar]
- 27. Klompas M, Branson R, Eichenwald EC, et al. Strategies to prevent ventilator-associated pneumonia in acute care hospitals: 2014 update. Infect Control Hosp Epidemiol 2014; 35(Suppl 2):S133–54. [DOI] [PubMed] [Google Scholar]
- 28. Cocoros NM, Priebe GP, Logan LK, et al. A pediatric approach to ventilator-associated events surveillance. Infect Control Hosp Epidemiol 2017; 38:327–33. [DOI] [PubMed] [Google Scholar]
- 29. Dong T, Zhao X. Rapid identification and susceptibility testing of uropathogenic microbes via immunosorbent ATP-bioluminescence assay on a microfluidic simulator for antibiotic therapy. Anal Chem 2015; 87:2410–8. [DOI] [PubMed] [Google Scholar]
- 30. Bauer KA, Perez KK, Forrest GN, Goff DA. Review of rapid diagnostic tests used by antimicrobial stewardship programs. Clin Infect Dis 2014; 59(Suppl 3):S134–45. [DOI] [PubMed] [Google Scholar]
- 31. Nolte FS. Molecular diagnostics for detection of bacterial and viral pathogens in community-acquired pneumonia. Clin Infect Dis 2008; 47(Suppl 3):S123–6. [DOI] [PMC free article] [PubMed] [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.