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. Author manuscript; available in PMC: 2020 Jan 29.
Published in final edited form as: Biochemistry. 2018 Dec 18;58(4):199–213. doi: 10.1021/acs.biochem.8b01090

Figure 2.

Figure 2

Overview of SHAPE reactivity. 2′-Hydroxyl acylation reactivity is dependent on the local environment, where constrained base pair nucleotides are unreactive compared to flexible nucleotides within secondary structure motifs. SHAPE reactivity based on nucleotide position provides additional constraints for structure prediction models. Adapted with permission from ref 70.