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Intractable & Rare Diseases Research logoLink to Intractable & Rare Diseases Research
. 2019 May;8(2):150–153. doi: 10.5582/irdr.2019.01046

Splice receptor-site mutation c.697-2A>G of the COL1A1 gene in a Chinese family with osteogenesis imperfecta

Naixiang Zhai 1,2,§, Yanqin Lu 1,2,§, Yanzhou Wang 3, Shie Zhang 1,2, Chuanming Peng 1,2, Shanshan Zhang 1,2, Tianyou Li 3, Mei Chen 4, Junlong Liu 4, Fengling Fang 4, Xiuzhi Ren 4,*, Jinxiang Han 1,2,*
PMCID: PMC6557241  PMID: 31218168

Summary

Osteogenesis imperfecta (OI) is a genetic disorder characterized by bone fragility and blue sclerae, which are mainly caused by a mutation of the COL1A1 or COL1A2 genes that encode type I procollagen. Mutations in the splice site of type I collagen genes are one of the mutations that cause OI and usually lead to a mild or moderate OI phenotype. A heterozygous A to G point mutation in intron 9 at the -2 position of the splice receptor site of COL1A1 was identified in a family with type I or IV OI. Three affected individuals in four generations of one family all presented with several clinical symptoms. They all had pectus carinatum, flat feet, gray-blue sclerae, and normal stature, teeth, hearing, and vision. Forearm fractures, small joint dislocations, and muscle weakness were all present in the patient's father and grandmother, who presented with a moderate type IV phenotype. The 10-year-old proband with type I OI had suffered a fracture twice, but had no history of joint dislocation or skin hyperextensibility. Charting the family helped to identify clinical symptoms in patients with mutations at the N-terminal of type I collagen genes.

Keywords: Osteogenesis imperfecta, splice receptor-site mutation, COL1A1, N-terminal of type I collagen

1. Introduction

Osteogenesis imperfecta (OI), also called brittle bone disease, is a genetic connective tissue disorder with a broad phenotypic variation and genetic heterozygosity. Autosomal dominant mutations in COL1A1 and COL1A2 are the main cause of classic osteogenesis imperfecta, which is characterized by bone fragility,

blue sclerae, defects in the teeth, and deficits in hearing and vision (1-3). Epidemiological data on OI varies greatly, with an average prevalence of 1 in 15,000 to 20,000 births worldwide (4). The proportion of OI and its subtypes differs markedly among certain races or ethnicities, the ratio of OI type I to OI type III is seven to one in white Australians (5). In North America, the number of black patients with type III OI is six times that of black patients with type I OI (6). A total of 3,548 patients with OI have been registered (http://oi.gene.le.ac.uk). Epidemiological data on Chinese patients with OI have not been available until now.

A splice site mutation occurs in the processing of pre-mRNA into mature mRNA and can lead to a substitution, insertion, deletion, or frameshift. Mutations in either splice-donor or splice-acceptor sequences may lead to retention of intronic DNA or exon skipping, hence the production of abnormal proteins (7). Over 300 splice site mutations have been documented in the OI mutation database; most affect the COL1A1 gene and most are substitutions (8,9).

The type I collagen gene is also the gene responsible for other genetic bone diseases including Caffey disease (10), arthrochalasia Ehlers-Danlos syndrome (aEDS) (11-13), cardiac valvular EDS (cvEDS), and OI/EDS disease (14,15). Given the clinical and genetic heterozygosity of these diseases, their diagnosis and treatment are always challenging, and this is particularly true for rare diseases. Hence, detailed clinical characteristics of rare diseases are extremely important. A substitution of c.697-2A>G in the COL1A1 gene has been reported three times, though information on clinical phenotypes is limited. The current report describes a splice site mutation of c.697- 2A>G in COL1A1 that was identified for the first time in Chinese patients with OI.

2. Case Report

The proband was a 10-year-old girl of normal height and weight at birth. She was 50 cm tall and weighed 3.3 kg at delivery. She could not walk until she was 1 and half years old. Delayed closure of the fontanelle was noted, and pectus carinatum was mild. She suffered a forearm fracture when she was 11 months old and a lower leg fracture at the age of 4, as shown on X-rays (Figure 1). Teeth, hearing, and vision were all normal in the proband and her father and grandmother, both of whom had OI. Flat feet, gray-blue sclerae, and pes planus were present in all three family members. The proband's affected father and grandmother also had a relatively normal height and weight, dislocations of the ankle and elbow, limb muscle weakness, and upper limb fractures. Joint laxity was not evident in the proband. The proband had a low bone mass, with a Z score of -2 in the lumbar spine according to dual energy X-ray absorptiometry (DXA).

Figure 1.

Figure 1.

X-rays from the proband. (A) 11 months of age; (B) age 4.

A heterozygous mutation of c.697-2A>G in intron 9 was identified in the proband and her affected family members (Figure 2) according to molecular analysis (16).

Figure 2.

Figure 2.

Molecular analysis of a family with OI. (A) Pedigree of the proband's family; (B) Electropherograms showing the partial sequence of COL1A1 in the proband and her parents.

3. Discussion

This report is the first to describe an A to G point mutation in intron 9 at the -2 position of the splice receptor site of the COL1A1 gene in a Chinese patient with OI and her family. There are no Chinese patients with this mutation according to a literature and database search (http://oi.gene.le.ac.uk) (8,9). The current patient and her family members had fractures of the upper limb, frequent small joint dislocations, blue sclerae, flat feet, and normal teeth, sight, and hearing. Since an RNA analysis was not performed, so errors in COL1A1 transcription were not analyzed.

A total of 12 individuals with OI and four different mutations at position of 697 have been reported; these mutations include 11 splice site mutations and 1 missense mutation. A splice site mutation of c.697- 2A>G was reported 3 times in patients with OI type I or IV; one of the three patients with type I OI was 35 years old and presented with blue sclerae, normal hearing, and bone fractures (17). The mutations -1G>T and -1G>C at the same site have also been identified in patients with mild or moderate OI who lacked clinical symptoms (http://oi.gene.le.ac.uk) (8,9,17). A mutation of G > C lead to glycine to arginine substitution, which was identified in one 68-year-old female patient with type IV OI; the patient did not have blue sclerae or a history of childhood fractures and extravertebral fractures, but she had suffered a vertebral fracture once (18). The splice site of c.697-2delA has been identified in one 14-year-old Korean female patient with type I OI (19).

A study has reported that mutations in the 5' splice donor site and 3' splice acceptor site consensus sequences are related to diseases (7). RNA mis-splicing underlies one of the main types of mutations in patients with OI and type I collagen genes. Type I collagen consists of 2 type I collagen α1 chains and 1 α2 chain coil in a triple helix structure, with 3 repeating amino acids: Gly-X-Y. COL1A1 and COL1A2 contain approximately 52 intronic sequences that are particularly susceptible to RNA splicing mutations (20). A mutation of c.697-2A>G introduces a cryptic splice acceptor site in intron 9 of the COL1A1 gene and may lead to retention of the intron in the abnormally spliced mRNA.

Mutations near the N-telopeptide, which links the N-propeptide to the triple helical domain of collagen, are often associated with aEDS or OI/EDS. Cases of OI/EDS are rarely reported (15,21-27). The molecular mechanism for OI/EDS is closely related to defective procollagen and cross-linking due to interference with N-propeptide processing (26,28). Patients with OI/EDS have generalized joint hyperlaxity and skin hyperextensibility, early progressive scoliosis, and OI symptoms such as blue sclerae and fractures.

Clinical symptoms of OI and OI/EDS overlap. The relationship between clinical characteristics of those diseases and mutations in the N-terminal region of type I collagen will be more apparent once more data on their clinical phenotypes are available.

Acknowledgements

The study was supported by a grant from the Shandong Key Research and Development Plan and the Natural Science Foundation (2016ZDJS07A10, 2016GSF201222 and 2015ZRC03171). The authors wish to thank the patient and her family members who participated in this study.

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