Abstract
In this study, we characterized the function of WUSCHEL-RELATED HOMEOBOX 2 (WOX2) using overexpression, CRES-T, and VP16 fusion techniques. Although the function of WOX2 has been described mainly in embryogenesis, it was unclear whether it also plays a role in the post-embryogenic developmental stage. We found that WOX2 has transcriptional repression activity and that either overexpression of WOX2 or expression of its chimeric repressor causes severe growth defects and other morphological phenotypes by impairing plant organ formation and separation. By contrast, VP16-fused WOX2-expressing plants did not display such severe phenotypic defects. In addition, some of them displayed phenotypic defects such as fusion of organs and induction of undifferentiated cells in the boundary regions of organs where GUS staining was clearly observed in the proWOX2:GUS transgenic plants. We suggest that WOX2 is involved in regulation of lateral organ formation and separation during the post-embryogenic development processes.
Keywords: Arabidopsis thaliana, CRES-T, transcription factor, VP16, WOX2
Plant growth and development are regulated through balanced cooperation among diverse transcriptional activators and repressors. To date, a variety of transcription factors have been precisely characterized in diverse developmental aspects of Arabidopsis. However, many transcription factors with functional redundancy remain uncharacterized because of the lack of clear phenotypes of their single loss-of-function mutants.
The WOX (WUSCHEL-RELATED HOMEOBOX) protein is a part of the homeobox transcription factor family, which are mainly involved in development by regulation of cell division and differentiation. Among the WOX-family transcription factors, WUSCHEL (WUS), WOX5, and WOX4 are well studied and are involved in the maintenance of stem cells in shoot apical, root, and vascular meristems, respectively (Chu et al. 2013; Hirakawa et al. 2010; Laux et al. 1996; Mayer et al. 1998; Tian et al. 2014). In contrast, only a few reports have described the function of WOX2, and these have focused only on its function during embryogenesis. WOX2 is involved in the determination of apical cell fate after the asymmetric division of the zygote during early embryogenesis (Haecker et al. 2004). It is also involved in cotyledon development together with other redundant WOX genes including WOX8 (Breuninger et al. 2008; Lie et al. 2012; Wu et al. 2007). However, it was unknown whether WOX2 continued to play roles after embryogenic development. We suspected that the currently limited information on WOX2 function was a consequence of its gene redundancy, given that the function of WOX2 could be masked by those of other multiple factors with functional and genetic redundancy in its single loss-of-function mutant and even in the wox2 wox8 double loss-of-function mutant which don’t show defects in the post embryonic development (Wu et al. 2007).
Two simple and useful techniques have been proposed for functional analysis of transcription factors with gene redundancy. The first technique, the Chimeric Repressor Gene-Silencing Technology (CRES-T) system, in which a plant-specific repression domain named SRDX-fused transcriptional activator is expressed, is useful for studying the function of transcriptional activators, because the SRDX-fused transcriptional activators can dominantly repress the expression of target genes even in the presence of its redundant transcription factors (Hiratsu et al. 2003; Mitsuda et al. 2011). Thus, the CRES-T lines can exhibit similar phenotypes shown in the multiple knockout mutants of the redundant factors. The second technique, in which the transcriptional repressor fused to an activation domain called VP16 (which originated in the herpes simplex virus) is expressed (Triezenberg et al. 1988), is also considered to be useful, as several reports have shown that fusion with VP16 can convert transcriptional repressors into activators (Fujiwara et al. 2014a; b; Hanano and Goto 2011; Shih et al. 2014).
In the current study, we investigated the functions of WOX2 using overexpression, CRES-T, and VP16 fusion. Our results suggest that WOX2 is a transcriptional repressor and it also functions during post-embryogenic development processes. In addition, WOX2 function is involved in the regulation of lateral organ formation and separation.
Materials and methods
Plant materials and growth conditions
Arabidopsis Columbia-0 was used in all experiments. Wild-type and transgenic plants were grown at 22°C under a 16/8-h light/dark cycle. The seeds of transgenic plants were surface-sterilized and plated on Murashige and Skoog medium (Murashige and Skoog 1962) containing 0.8% agar, 30 mg l−1 hygromycin or 25 mg l−1 kanamycin with 250 µg l−1 vancomycin. After incubation in the dark at 4°C for at least 2 days, the plates were placed in a growth chamber. Transgenic seedlings on each antibiotic-medium plate were randomly selected and transplanted to the soil at 16 days post-germination (dpg) for further phenotypic observation.
GUS staining
GUS staining was performed as previously described (Chung et al. 2011). Samples were treated with 90% acetone on ice for 15 min and rinsed with water prior to staining with the following solution: 1.9 mM X-gluc, 5 mM potassium ferricyanide, 5 mM potassium ferrocyanide, and 0.3% Triton X-100 in 100 mM sodium phosphate buffer, pH 7.2. The samples were vacuum-filtered for 15 min at room temperature and then incubated overnight at 37°C. Stained seedlings were dehydrated in a graded ethanol series (30, 50, 70, 90, and 100%).
Plasmid construction
All primers used in this study are shown in Supplemental Table 1.
The coding region of the WOX2 (At5g59340) gene was amplified through PCR from an Arabidopsis thaliana cDNA using appropriate primers. The plasmids expressing WOX2, WOX2-SRDX, and WOX2-VP16 under a 35S promoter were constructed using pro35SG (Oshima et al. 2011), pro35SSRDXG (Mitsuda et al. 2006), and a modified pro35SVP16-1 vector, respectively. The modified pro35SVP16-1 vector was made by insertion of a KpnI recognition site before the VP16 region. After confirmation of the insert sequences, each transgene cassette region was transferred into the T-DNA destination vector pBCKH (Mitsuda et al. 2006), which contains a hygromycin resistance gene, by Gateway LR reaction (Thermo Fisher Scientific, MA, USA).
To prepare a plasmid expressing a WOX2 promoter driven GUS gene, 3076 bp of the region 5′ upstream from the start codon was amplified through PCR from Arabidopsis genomic DNA. The amplified PCR product was digested with HindIII and SmaI and inserted into the same enzyme sites of the pGUS_entry vector (Mitsuda et al. 2007). After confirmation of the insert sequences, the cassette region was transferred into the T-DNA destination vector, pBCKK (Mitsuda et al. 2006), containing a kanamycin resistance gene, by Gateway LR reaction (Thermo Fisher Scientific).
A plasmid expressing the GAL4 DNA binding domain (GAL4DB) driven by pro35S was prepared by insertion of the GAL4DB region into a p35SHSPG vector (Oshima et al. 2011). For effector plasmids, the amplified regions of WOX2, and WOX2-VP16 from the plasmids named pro35S:WOX2 and pro35S:WOX2-VP16, respectively, were transferred into the same enzyme sites of the pro35S:GAL4DB vector, generating pro35S:GAL4DB-WOX2 and pro35S:GAL4DB-WOX2-VP16 plasmids, respectively.
Plant transformation
The pro35S:WOX2, pro35S:WOX2-SRDX, pro35S:WOX2-VP16 in pBCKH and proWOX2:GUS in pBCKK were introduced into Agrobacterium tumefaciens GV3101 (Koncz and Schell 1986). The wild-type Arabidopsis thaliana was transformed by the floral dip method (Clough and Bent 1998).
Transient luciferase assay
Protoplasts were isolated from Arabidopsis rosette leaves grown for 3–4 weeks using the Tape-Arabidopsis Sandwich method (Wu et al. 2009) and prepared as previously described (Yoshida et al. 2013). Each effector plasmid was co-transfected with a reporter plasmid containing 5×GAL4-TATA-Luciferase (Hiratsu et al. 2004) and an internal control plasmid (phRLHSP) (Oshima et al. 2013) expressing modified Renilla luciferase. The reporter activity was normalized to the activity of Renilla luciferase and expressed as relative luciferase activity.
Results
Ectopic expression of WOX2 and its chimeric repressor WOX2-SRDX disturb normal organogenesis
To identify novel transcription factors that function mainly in growth and development of Arabidopsis, we randomly chose and observed lines from an Arabidopsis CRES-T library, which is a pool of transgenic plants expressing SRDX-fused transcription factors driven by the 35S promoter. Finally, we selected the WOX2 CRES-T lines (WOX2-SRDX), because they displayed extreme morphological phenotypes. We also produced WOX2-overexpressing plants (WOX2-ox) for further analysis. Most WOX2-SRDX T1 transgenic lines (26 of 37) showed abnormal morphological phenotypes having incompletely differentiated and fused multiple leafy organs and were unable to maintain growth (Figure 1B–D). The remaining 11 WOX-SRDX lines and all WOX2-ox plants (82 transformants) had similar phenotypes exhibiting hyperhydric symptoms, which are among the major problems causing the failure of plant regeneration (Fauguel et al. 2008; Yu et al. 2011). Moreover, although WOX2-ox plants could form a pair of cotyledons and leaves which most of WOX2-SRDX could not, they were still abnormal and displayed severe growth defects (Figure 1F–H). These results suggest that the ectopic expression of WOX2-SRDX or WOX2 exerts negative effects on normal organogenesis regardless of the transgene expression levels, probably by strongly impairing organ differentiation and separation.
Figure 1. Ectopic expression of WOX2 and its chimeric repressor WOX2-SRDX disturb normal organogenesis. (A) and (E) are the pictures of a wild-type plant which was grown with WOX2-SRDX and WOX2-ox plants, respectively, as each control. Representative phenotypes of (B–D) WOX2-SRDX and (F–H) WOX2-ox plants at 14 dpg. Bar=1 mm.
WOX2 has transcriptional repression activity that is partially attenuated by VP16 fusion
SRDX fusion can convert the transcriptional activator into a repressor, thus causing the CRES-T lines and overexpressing plants without SRDX fusion to display contrasting phenotypes (Hiratsu et al. 2003; Mitsuda et al. 2011). However, SRDX fusion does not affect or enhances the effects of a native repressor in transgenic plants, leading to phenotypes similar to or stronger than those of its overexpressing plants (Ikeda and Ohme-Takagi 2009; Matsui et al. 2008; Nakata et al. 2013). As described above, given that WOX2-SRDX lines and WOX2-ox plants commonly exhibited similar phenotypes and some WOX2-SRDX lines displayed more severe defects in organogenesis and growth than WOX2-ox plants (Figure 1), we hypothesized that WOX2 acts as a transcriptional repressor. To confirm this hypothesis, we tested the transcriptional activity of WOX2 by transient luciferase assays. As shown in Figure 2, the reporter gene activity in GAL4DB-WOX2 was significantly lower than that in GAL4DB as a control, suggesting that WOX2 is a transcriptional repressor.
Figure 2. WOX2 has transcriptional repression activity and fusion with VP16 domain partially attenuates the transcriptional repression activity. (A) Schematic representation of the constructs used for transient luciferase assay. The reporter constructs consist of Cauliflower mosaic virus 35S promoter (CaMV35S), fifth repeated GAL4 binding sequence (5×GAL4BS) and firefly luciferase (LUC) coding sequence. (B) Transient expression assays of GAL4 DNA Binding domain (GAL4DB)-fused VP16, WOX2 and WOX2-VP16. Constructs for the assays are shown in (A). The mean of values for the vector control GAL4DB was set to 1, and relative values were calculated. Error bars represent standard deviation of the results of five or six technical replicates. Different letters indicate significant differences with Welch’s t-test followed by Holm-Bonferroni correction for multiple comparisons.
Fusion of transcriptional repressors to VP16 activation domain is a useful technique for characterizing transcriptional repressors, as VP16 fusion can convert the repressors into activators (Fujiwara et al. 2014a, b; Hanano and Goto 2011; Shih et al. 2014). Moreover, transgenic plants expressing a VP16-fused transcriptional repressor can display the phenotypes resembling those of multiple knockout mutants of the factor and its redundant factors caused by the upregulation of their target gene transcriptions that are repressed by those transcriptional repressors in wild-type plants (Fujiwara et al. 2014b). However, there is also a report showing the case that VP16 fusion cannot convert the transcriptional repressor into the activator (Ohta et al. 2001). Having found that WOX2 has strong transcriptional repression activity and that the WOX2-SRDX and WOX2-ox transgenic plants exhibit severe growth retardation, we used the VP16 fusion technique for further analysis. First we tested the effect of VP16 fusion on the transcriptional repression activity of WOX2 using transient luciferase assays (Figure 2). Reporter gene expression by GAL4DB-WOX2-VP16 was stronger than that by GAL4DB-WOX2, but was still lower than the basal level shown for the GAL4DB vector control (Figure 2B). On the other hand, strong activation of reporter gene expression by GAL4DB-VP16 was detected. These results suggest that the fusion with VP16 partially attenuates the repression activity of WOX2 but is not strong enough to convert the strong repression activity of WOX2 into activation activity.
WOX2 promoter activity is high in cotyledons and boundary regions of organs in aerial parts during the post-embryogenic developmental stage
Previous reports on WOX2 have mainly focused on its function during early embryogenesis (Haecker et al. 2004; Lie et al. 2012; Ueda et al. 2011). However, it has been unclear whether WOX2 also plays a role in post-embryogenic developmental stages. To investigate this possibility, we generated transgenic plants harboring a 3-kb WOX2 promoter-β-glucuronidase (GUS) fusion construct (proWOX2:GUS). In the seedlings, the GUS staining was detected in the cotyledon and early developing leaves (Figure 3A). In mature plants, GUS staining was detected mainly in junction regions, particularly vascular regions connecting inflorescence stems and pedicels (Figure 3B, C), between the stem and axillary stems or cauline leaves (Figure 3D), and between the hypocotyl and each rosette leaf (Figure 3E, F, G). These results suggest that WOX2 is involved in developmental regulation not only in the early embryogenic stage but also during post-embryogenic processes. They also suggest that WOX2 functions in the boundary regions of organs in plants.
Figure 3. WOX2 promoter activity is high in the lateral organ boundary regions. GUS staining in proWOX2:GUS-expressing plants. (A) Cotyledons and 1st and 2nd leaves in seedlings at 14 dpg. Both black arrows and C indicate cotyledons. (B) Inflorescence apex. (C) Mature inflorescence with siliques. (D) Inflorescence stem inducing a cauline leaf and an axillary shoot. (E to G) The region at the crown of the rosette leaves. (F) Magnified view of the boxed region shown in (E). (G) Cross section of the boxed region shown in (E). Bar=1 mm.
Fusion with VP16 attenuates the negative effect of WOX2 overexpression on plant organogenesis
To assess the effect of VP16 fusion on WOX2 in plants, we produced transgenic plants expressing VP16-fused WOX2 (WOX2-VP16 plants) and analyzed a total of 70 independent T1 lines. The WOX2-VP16 plants did not exhibit the severe growth defects shown in WOX2-SRDX lines or WOX2-ox plants (Figure 4B). However, most plants showed slightly irregular phyllotaxis and 24 (30%) showed distinct phenotypic alteration. For example, parts within each single inflorescence stem were fused by rolling (Figure 4C, D), and basal regions, which are considered to induce lateral stems, induced undifferentiated cells instead (Figure 4E, F). Moreover, several organs such as inflorescence stems (Figure 4H, I, K), pedicels (Figure 4M) or carpels (Figure 4N, O) were fused each other. Interestingly, the regions showing the phenotypic alterations were almost identical to those displaying clear GUS staining in the proWOX2:GUS-expressing plants. Given that the results of transient luciferase assay suggested that VP16 fusion attenuated the repression activity of WOX2, it is likely that the negative effects of WOX2 overexpression on plant growth were mitigated by VP16 fusion and that then phenotypic alterations mainly occurred in the regions where endogenous WOX2 originally functioned. Taken together, we suggest that WOX2 negatively regulates lateral organ formation and separation.
Figure 4. VP16 fusion attenuates the negative effect of WOX2 overexpression on plant growth. The phenotypes of (A) wild-type and (B) WOX2-VP16 plants at 30 dpg. The phenotypes of WOX2-VP16 transgenic plants displaying phenotypic alteration (C, E, H) and wild-type (G) at 45 dpg. Bar=1 cm. (D) and (F) Magnified views of the regions in the boxes of panels (C) and (E), respectively. Bar=1 mm. (I) Magnified view of the region in the box of panel (H). Bar=1 cm. (J) and (K) Cross sections of the stems in the boxes of panels (G) and (H) under UV illumination. Bar=500 µm. Inflorescence apex of (L) wild-type and (M) WOX2-VP16 plants. Red arrow indicates the fused pedicels in (M). (N) and (O) Fused siliques in WOX2-VP16 plants. Bar=1 mm.
Discussion
In this study, we focused on the function of WOX2, because its CRES-T line expressing WOX2-SRDX displayed the most severe defects in both morphology and growth among the CRES-T lines which we observed. Previous reports have mainly focused on the function of WOX2 during the early embryogenic developmental stage, and it was unknown whether WOX2 remains functional after embryogenic development (Haecker et al. 2004; Lie et al. 2012; Ueda et al. 2011). Moreover, public databases including the Arabidopsis eFP Browser (Winter et al. 2007) also show that WOX2 is mainly expressed in the seeds and embryos. Here we showed that WOX2 plays a role during the post-embryogenic developmental stages. We found that the activity of WOX2 promoter is high not only in the cotyledon but also in developing leaves and the boundary regions connecting two independent organs including leaves, lateral stems, and petioles in inflorescence stems (Figure 3). As shown in Figure 1, WOX2-ox and WOX2-SRDX plants commonly displayed marked phenotypic alterations including severe defects in growth and organogenesis suggesting the involvement of WOX2 in regulation of those processes. Several transgenic plants overexpressing other WOX family genes have been already reported. For example, overexpression of WUS is known to induce severe growth defects including ectopic somatic embryo formation (Gallois et al. 2004; Ikeda et al. 2009; Zuo et al. 2002). Overexpression effects of WOX1 shown in its activation-tagging mutant is known to cause pleiotropic growth defects including low fertility and reduced organ growth although they keep growing (Zhang et al. 2011). Additionally, the transgenic plants ectopically expressing WOX4, which is involved in development of vascular stem cells, were reported to mainly display impaired root growth inducing abnormal cell proliferation (Hirakawa et al. 2010). Based on these reports, ectopically expressed WOX genes as well as WOX2 can affect the plant growth and development, suggesting the growth defects shown in WOX2-ox plants may not be caused only by WOX2-specific effects. However, since the phenotypes of transgenic plants overexpressing each WOX gene differ in their types, severity and positions, most phenotypes shown in WOX2-ox plants probably reflect the WOX2-specific effects by its overexpression.
The common phenotypes shown in WOX2-ox and WOX2-SRDX plants led us to the hypothesis that WOX2 has transcriptional repression activity. This hypothesis was confirmed by the result of the transient expression assay (Figure 2). Given that WOX2 is known to have the conserved WUS-box motif containing the TLPLFP, which contributes to the transcriptional repression activity in WUS and other WOX proteins (Ikeda et al. 2009; Lin et al. 2013), it is possible that the transcriptional repression activity of WOX2 depends on the motif. We also found that VP16 fusion can attenuate the transcriptional repression activity of WOX2, but not sufficiently convert repression into activation activity (Figure 2). Given that the WOX2-ox and WOX2-SRDX transgenic plants could not maintain growth, it was difficult to analyze WOX2-induced phenotypic changes in further stages of development. We found that WOX2-VP16 plants do not exhibit such severe growth defects as WOX2-ox and WOX2-SRDX plants, suggesting that VP16 fusion can mitigate the negative effect of WOX2 overexpression on plant growth, probably by attenuation of the transcriptional repression activity of WOX2 (Figures 1, 2, 4). These results also suggest that the VP16 fusion technique may be useful for studying strong transcriptional repressors that cause severe phenotypic defects or lethality.
The wox2 wox8 double loss-of-function mutant is reported not to show phenotype in the post embryonic development (Wu et al. 2007). This suggests that other factors including WOX family members have redundant functions with WOX2 in the post embryonic development. However, in the multiple mutants of WOX2 and other more than two WOX genes, the function of WOX2 and other WOX during later developmental stages was not shown because their loss-of-function-induced effects on early embryogenesis were too strong to persist their growing (Breuninger et al. 2008; Haecker et al. 2004). On the other hand, VP16-fused WOX2 has effects only on post-embryogenic developmental stages probably because it was expressed by 35S promoter whose activity is undetectable during early embryogenesis (Sunikumar et al. 2002). Therefore, combination of VP16 fusion and usage of the 35S promoter provided us new insights into the possible functions of WOX2 in the post-embryogenic developmental stage.
WOX2-VP16 plants exhibited morphological alteration such as induction of fused or undifferentiated lateral organs mainly in boundary regions (Figure 4). Some of these phenotypic alterations are also shown in the 35S:WUS-VP16 transgenic plants (Fujiwara et al. 2014a; Ikeda et al. 2009). It could be caused by the ectopic expression of genes with similar structures and fusion of VP16. It is also possible that WUS and WOX2 have redundant functions in these boundary regions. Further analyses would be required to see whether native WUS is also expressed in the same regions where WOX2 functions and whether WUS can redundantly function with WOX2 for the lateral organ formation and separation.
Although we confirmed that the total expression level of WOX2 region from the transgene and the endogenous gene was much higher in the WOX2-VP16 transgenic seedlings compared to that of WT (Supplementary Figure 1), these transgenic plants seemed not to always consistently induce strong and constant phenotypic defects. In addition, consistent correlation between the strength of phenotype and the expression of transgene was not observed (data not shown). Moreover, most of morphological alterations were mainly shown in the regions where WOX2 promoter activity was high (Figures 3, 4), although WOX2-VP16 was ectopically expressed by the 35S promoter. An explanation could be that some unknown specific working partners are required for the function of WOX2 and WOX2-VP16 which are located only in the regions where endogenous WOX2 is expressed in the post embryonic stages. WOX2 and such partners may function together to appropriately repress target gene expressions for proper lateral organ formation and separation in wild-type plants. In the case of WOX2-VP16 plants, WOX2-VP16 and the partners may also function together but have weakened repression activity to the target gene expressions which causes the defects in lateral organ formation and separation.
In conclusion, the present results suggest that WOX2 is a transcriptional repressor and plays a role in post-embryogenic as well as embryogenic development processes. Furthermore, WOX2 may be an important hidden factor in the regulation of lateral organ formation and separation. Several factors including LOF (LATERAL ORGAN FUSION) 1 and 2, LOB1 (LATERAL ORGAN BOUNDARIES 1), CUC (CUP-SHAPED COTYLEDON) 1, 2 and 3 are involved in boundary formation and act in junction regions during both embryogenic and post embryogenic developmental stages (Aida et al. 1997, 1999; Bell et al. 2012; Burian et al. 2015; Hibara et al. 2006; Lee et al. 2009; Shuai et al. 2002). All of these factors may play a redundant role with WOX2. It is also possible that other WOX family proteins also function in junction regions together with WOX2. Further analysis of WOX2 including identification of its downstream genes and its working partners will shed light on WOX2-mediated novel transcriptional networks in lateral organ formation and separation.
Acknowledgments
We thank Ms. Yoshimi Sugimoto, Ms. Miyoko Yamada, Ms. Yukie Kimura, Ms. Naomi Ujiie, and Ms. Sumiko Takahashi for their technical assistance. We are also grateful to our laboratory members for their help and encouragement. This study was partially supported by the Funding Program for Next Generation World-Leading Researchers Program (GS030) to S.F.
Abbreviations
- CRES-T
Chimeric Repressor Gene-Silencing Technology
- pro35S
Cauliflower mosaic virus 35S promoter
- GUS
β-glucuronidase
- WOX
WUSCHEL-related homeobox
- GAL4DB
GAL4 DNA Binding domain
- LOF
LATERAL ORGAN FUSION
- LOB1
LATERAL ORGAN BOUNDARIES 1
- CUC
CUP-SHAPED COTYLEDON
- dpg
day post germination
Supplementary Data
References
- Aida M, Ishida T, Fukaki H, Fujisawa H, Tasaka M (1997) Genes involved in organ separation in Arabidopsis: An analysis of the cup-shaped cotyledon mutant. Plant Cell 9: 841–857 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Aida M, Ishida T, Tasaka M (1999) Shoot apical meristem and cotyledon formation during Arabidopsis embryogenesis: Interaction among the CUP-SHAPED COTYLEDON and SHOOT MERISTEMLESS genes. Development 126: 1563–1570 [DOI] [PubMed] [Google Scholar]
- Bell EM, Lin WC, Husbands AY, Yu L, Jaganatha V, Jablonska B, Mangeon A, Neff MM, Girke T, Springer PS (2012) Arabidopsis lateral organ boundaries negatively regulates brassinosteroid accumulation to limit growth in organ boundaries. Proc Natl Acad Sci USA 109: 21146–21151 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Breuninger H, Rikirsch E, Hermann M, Ueda M, Laux T (2008) Differential expression of WOX genes mediates apical-basal axis formation in the Arabidopsis embryo. Dev Cell 14: 867–876 [DOI] [PubMed] [Google Scholar]
- Burian A, Raczyńska-Szajgin M, Borowska-Wykręt D, Piatek A, Aida M, Kwiatkowska D (2015) The CUP-SHAPED COTYLEDON2 and 3 genes have a post-meristematic effect on Arabidopsis thaliana phyllotaxis. Ann Bot (Lond) 115: 807–820 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Chu H, Liang W, Li J, Hong F, Wu Y, Wang L, Wang J, Wu P, Liu C, Zhang Q, et al. (2013) A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice. J Exp Bot 64: 5359–5369 [DOI] [PubMed] [Google Scholar]
- Chung KM, Tasaka M (2011) RPT2a, a 26S proteasome AAA-ATPase, is directly involved in Arabidopsis CC-NBS-LRR protein uni-1D-induced signaling pathways. Plant Cell Physiol 52: 1657–1664 [DOI] [PubMed] [Google Scholar]
- Clough S, Bent A (1998) Floral dip: A simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana. Plant J 16: 735–743 [DOI] [PubMed] [Google Scholar]
- Fauguel CM, Vega TA, Nestares G, Zorzoli R, Picardi LA (2008) Anatomy of normal and hyperhydric sunflower shoots regenerated in vitro. Hella 31: 17–26 [Google Scholar]
- Fujiwara S, Kigoshi K, Mitsuda N, Suzuki K, Ohme-Takagi M (2014a) VP16 fusion efficiently reveals the function of transcriptional repressors in Arabidopsis. Plant Biotechnol 31: 123–132 [Google Scholar]
- Fujiwara S, Sakamoto S, Kigoshi K, Suzuki K, Ohme-Takagi M (2014b) VP16 fusion induces the multiple-knockout phenotype of redundant transcriptional repressors partly by Med25-independent mechanisms in Arabidopsis. FEBS Lett 588: 3665–3672 [DOI] [PubMed] [Google Scholar]
- Gallois JL, Nora FR, Mizukami Y, Sablowski R (2004) WUSCHEL induces shoot stem cell activity and developmental plasticity in the root meristem. Genes Dev 18: 375–380 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Haecker A, Gross-Hardt R, Geiges B, Sarkar A, Breuninger H, Herrmann M, Laux T (2004) Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana. Development 131: 657–668 [DOI] [PubMed] [Google Scholar]
- Hanano S, Goto K (2011) Arabidopsis TERMINAL FLOWER1 is involved in the regulation of flowering time and inflorescence development through transcriptional repression. Plant Cell 23: 3172–3184 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hibara K, Karim MR, Takada S, Taoka K, Furutani M, Aida M, Tasaka M (2006) Arabidopsis CUP-SHAPED COTYLEDON3 regulates postembryonic shoot meristem and organ boundary formation. Plant Cell 18: 2946–2957 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hirakawa Y, Kondo Y, Fukuda H (2010) TDIF peptide signaling regulates vascular stem cell proliferation via the WOX4 homeobox gene in Arabidopsis. Plant Cell 22: 2618–2629 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Hiratsu K, Matsui K, Koyama T, Ohme-Takagi M (2003) Dominant repression of target genes by chimeric repressors that include the EAR motif, a repression domain, in Arabidopsis. Plant J 34: 733–739 [DOI] [PubMed] [Google Scholar]
- Hiratsu K, Mitsuda N, Matsui K, Ohme-Takagi M (2004) Identification of the minimal repression domain of SUPERMAN shows that the DLELRL hexapeptide is both necessary and sufficient for repression of transcription in Arabidopsis. Biochem Biophys Res Commun 321: 172–178 [DOI] [PubMed] [Google Scholar]
- Hiratsu K, Ohta M, Matsui K, Ohme-Takagi M (2002) The SUPERMAN protein is an active repressor whose carboxy-terminal repression domain is required for the development of normal flowers. FEBS Lett 514: 351–354 [DOI] [PubMed] [Google Scholar]
- Ikeda M, Ohme-Takagi M (2009) A novel group of transcriptional repressors in Arabidopsis. Plant Cell Physiol 40: 970–975 [DOI] [PubMed] [Google Scholar]
- Ikeda M, Mitsuda N, Ohme-Takagi M (2009) Arabidopsis WUSCHEL is a bifunctional transcription factor that acts as a repressor in stem cell regulation and as an activator in floral patterning. Plant Cell 21: 3493–3505 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Koncz C, Schell J (1986) The promoter of the T-DNA gene 5 controls the tissue-specific expression of chimeric genes carried by a novel type of a Agrobacterium binary vector. Mol Gen Genet 204: 383–396 [Google Scholar]
- Laux T, Mayer KF, Berger J, Jurgens G (1996) The WUSCHEL gene is required for shoot and floral meristem integrity in Arabidopsis. Development 122: 87–96 [DOI] [PubMed] [Google Scholar]
- Lee DK, Geisler M, Springer PS (2009) LATERAL ORGAN FUSION1 and LATERAL ORGAN FUSION2 function in lateral organ separation and axillary meristem formation in Arabidopsis. Development 136: 2423–2432 [DOI] [PubMed] [Google Scholar]
- Lie C, Kelsom C, Wu X (2012) WOX2 and STIMPY-LIKE/WOX8 promote cotyledon boundary formation in Arabidopsis. Plant J 72: 674–682 [DOI] [PubMed] [Google Scholar]
- Lin H, Niu L, McHale NA, Ohme-Takagi M, Mysore KS, Tadege M (2013) Evolutionarily conserved repressive activity of WOX2 proteins mediates leaf blade out growth and floral organ development in plants. Proc Natl Acad Sci USA 110: 366–371 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Matsui K, Umemura Y, Ohme-Takagi M (2008) AtMYBL2, a protein with a single MYB domain, acts as a negative regulator of anthocyanin bio synthesis in Arabidopsis. Plant J 55: 954–967 [DOI] [PubMed] [Google Scholar]
- Mayer KF, Schoof H, Haecker A, Lenhard M, Jurgens G, Laux T (1998) Role of WUSCHEL in regulating stem cell fate in the Arabidopsis shoot meristem. Cell 95: 805–815 [DOI] [PubMed] [Google Scholar]
- Mitsuda N, Hiratsu K, Todaka D, Nakashima K, Yamaguchi-Shinozaki K, Ohme-Takagi M (2006) Efficient production of male and female sterile plants by expression of a chimeric repressor in Arabidopsis and rice. Plant Biotechnol J 4: 325–332 [DOI] [PubMed] [Google Scholar]
- Mitsuda N, Iwase A, Yamamoto H, Yoshida M, Seki M, Shinozaki K, Ohme-Takagi M (2007) NAC transcription factors, NST1 and NST3, are key regulators of the formation of secondary walls in woody tissues of Arabidopsis. Plant Cell 19: 270–280 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Mitsuda N, Matsui K, Ikeda M, Nakata M, Oshima Y, Nagatoshi Y, Ohme-Takagi M (2011) CRES-T, an effective gene silencing system utilizing chimeric repressors. Methods Mol Biol 754: 87–105 [DOI] [PubMed] [Google Scholar]
- Murashige T, Skoog FK (1962) A revised medium for rapid growth and bio-assays with tobacco tissue cultures. Physiol Plant 15: 473–497 [Google Scholar]
- Nakata M, Mitsuda N, Herde M, Koo AJK, Moreno JE, Suzuki K, Howe GA, Ohme-Takagi M (2013) A bHLH-Type transcription Factor, ABA-inducible bHLH-type transcription factor/JA-associated MYC2-like, acts as a repressor to negatively regulate jasmonate signaling in Arabidopsis. Plant Cell 25: 1641–1656 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Ohta M, Matsui K, Hiratsu K, Shinshi H, Ohme-Takagi M (2001) Repression domains of class II ERF transcriptional repressors share an essential motif for active repression. Plant Cell 13: 1959–1969 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Oshima Y, Shikata M, Koyama T, Ohtsubo N, Mitsuda N, Ohme-Takagi M (2013) Mixta-like transcription factors and Wax inducer/SHINE coordinately regulates cuticle development in Arabidopsis and Torenia fournieri. Plant Cell 25: 1609–1624 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Oshima Y, Mitsuda N, Nakata M, Nakagawa T, Nagaya S, Kato K, Ohme-Takagi M (2011) Novel vector systems to accelerate functional analysis of transcription factors using chimeric repressor gene-silencing technology (CRES-T). Plant Biotechnol 28: 201–210 [Google Scholar]
- Shih CF, Hsu WF, Peng YJ, Yang CH (2014) The NAC-like gene ANTHER INDEHISCENCE FACTOR acts as a repressor that controls anther dehiscence by regulating genes in the jasmonate biosynthesis pathway in Arabidopsis. J Exp Bot 65: 621–639 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Shuai B, Reynaga-Peña CG, Springer PS (2002) The lateral organ boundaries gene defines a novel, plant-specific gene family. Plant Physiol 129: 747–761 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Sunikumar G, Mohr L, Lopata-Finch E, Emani C, Rathore KS (2002) Development and tissue-specific expression of CaMV 35S promoter in cotton as revealed by GFP. Plant Mol Biol 50: 463–474 [DOI] [PubMed] [Google Scholar]
- Tian H, Wabnik K, Niu T, Li H, Yu Q, Pollmann S, Vanneste S, Govaerts W, Rolcik J, Geisler M, et al. (2014) WOX5-IAA17 feedback circuit-mediated cellular auxin response is crucial for the patterning of root stem cell niches in Arabidopsis. Mol Plant 7: 277–289 [DOI] [PubMed] [Google Scholar]
- Triezenberg SJ, Kingsbury RC, McKnight SL (1988) Functional dissection of VP16, the trans-activator of herpes simplex virus immediate early gene expression. Genes Dev 2: 718–729 [DOI] [PubMed] [Google Scholar]
- Ueda M, Zhang Z, Laux T (2011) Transcriptional activation of Arabidopsis Axis Patterning Genes WOX8/9 links Zygote polarity to embryo development. Dev Cell 20: 264–270 [DOI] [PubMed] [Google Scholar]
- Winter D, Vinegar B, Nahal H, Ammar R, Wilson GV, Provart NJ (2007) An “Electronic Fluorescent Pictograph” browser for exploring and analyzing large-scale biological data sets. PLoS ONE 2: e718. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wu FH, Shen SC, Lee LY, Lee SH, Chan MT, Lin CS (2009) Tape-Arabidopsis Sandwich—A simpler Arabidopsis protoplast isolation method. Plant Methods 5: 16. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Wu X, Chory J, Weigel D (2007) Combinations of WOX activities regulate tissue proliferation during Arabidopsis embryonic development. Dev Biol 309: 306–316 [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yoshida K, Sakamoto S, Kawai T, Kobayashi Y, Sato K, Ichinose Y, Yaoi K, Akiyoshi-Endo M, Sato H, Takamizo T, et al. (2013) Engineering the Oryza sativa cell wall with rice NAC transcription factors regulating secondary wall formation. Front Plant Sci 4: 383. [DOI] [PMC free article] [PubMed] [Google Scholar]
- Yu Y, Zhao YQ, Zhao B, Ren S, Guo YD (2011) Influencing factors and structural characterization of hyperhydricity of in vitro regeneration in Brassica oleracea var. italic. Can J Plant Sci 91: 159–165 [Google Scholar]
- Zhang Y, Wu R, Qin G, Chen Z, Gu H, Qu LJ (2011) Over-expression of WOX1 leads to defects in meristem development and polyamine homeostasis in Arabidopsis. J Integr Plant Biol 53: 493–506 [DOI] [PubMed] [Google Scholar]
- Zuo J, Niu QW, Frugis G, Chua NH (2002) The WUSCHEL gene promotes vegetative-to-embryonic transition in Arabidopsis. Plant J 30: 349–359 [DOI] [PubMed] [Google Scholar]
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