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. 2019 Jun 20;7:e7031. doi: 10.7717/peerj.7031

Table 3. Base composition and related statistics (skewness evaluation) for protein-coding genes and ribosomal regions of the mtDNA ofParagonimus ohiraiand otherParagonimusspecies, and means and standard deviations of base composition of all species included in the study.

Sequence Length(nt)* A T G C A+T AT-skew G+C GC-skew
Protein-coding Pohi-Kinosaki-JP 10,104 17.00 46.00 26.17 10.83 63.00 −0.46 37.00 0.41
Pwes(2n)-Haenam-KR 10,101 13.40 38.21 30.61 17.77 51.61 −0.48 48.39 0.26
Pwes(3n)-Bogil-KR 10,101 13.33 38.25 30.61 17.81 51.58 −0.48 48.42 0.26
Pwes-TypeI-IN 10,104 14.89 40.50 29.36 15.25 55.39 −0.46 44.61 0.32
Pwes-AP-IN 10,140 14.72 40.40 29.58 15.30 55.12 −0.46 44.88 0.32
Phet_China 10,101 14.93 43.91 28.18 12.98 58.84 −0.49 41.16 0.37
Pkell 10,098 15.19 44.78 27.73 12.30 59.97 −0.49 40.30 0.38
Mean, all included species 17.58 46.04 25.91 10.41 63.64 −0.45 36.38 0.43
S.D. all included species 3.5 2.86 2.85 2.49 4.93 0.07 4.91 0.07
Ribosomal RNA coding Pohi-Kinosaki-JP 1,710 22.92 37.19 26.90 12.98 60.01 −0.23 39.99 0.35
Pwes(2n)-Haenam-KR 1,732 19.11 32.62 31.12 17.15 51.73 −0.26 48.27 0.29
Pwes(3n)-Bogil-KR 1,732 18.94 32.79 31.29 16.97 51.73 −0.27 48.27 0.30
Pwes-TypeI-IN 1,729 20.24 35.11 29.84 14.81 55.35 −0.27 44.65 0.34
Pwes-AP-IN 1,721 20.22 34.63 30.16 14.99 54.85 −0.26 45.15 0.34
Phet China 1,711 20.81 37.05 28.23 13.91 57.86 −0.28 42.14 0.34
Pkell 1,711 21.33 37.52 27.47 13.68 58.85 −0.28 41.15 0.33

Notes.

Pohi
Paragonimus ohirai
Pwes
P. westermani
Phet
P. heterotremus
Pkell
P. kellicotti.
JP
Japan
KR
South Korea
IN
India.
Kinosaki
Kinosaki locality, Japan
AP
Arunachal Pradesh locality, India (see Table S1)

High A and T nucleotide use (17.00% and 46.00%) in P. ohirai is bolded. S.D. standard deviation nt nucleotide.

a

The overlap between nad4L and nad4 is counted twice in this calculation.