Abstract
Objective:
Small ubiquitin-related modifiers (SUMOs) are a group of post-translational modification proteins extensively expressed in eukaryotes. Abnormal SUMOylation can lead to the development of various diseases. This article summarizes the progress on research of the role of SUMOs in various types of kidney diseases to further increase the understanding of the regulatory functions of SUMOylation in the pathogenesis of kidney diseases.
Data sources:
This review was based on articles published in the PubMed databases up to January 2018, using the keywords including “SUMOs,” “SUMOylation,” and “kidney diseases.”
Study selection:
Original articles and critical reviews about SUMOs and kidney disease were selected for this review. A total of 50 studies were in English.
Results:
SUMO participates in the activation of NF-κB inflammatory signaling pathway, playing a central regulatory role in the inflammation and progression of DN, and the secretion of various chemokines in AKI. SUMO involves in the regulation of TG2 and Nrf2 antioxidant stress, affecting renal tubular injury in AKI. SUMO affects the MAPK/ERK pathway, regulating intracellular signal transduction, modulating the transcription and expression of effector molecules in DN. SUMO contributes to the TGF-β/Smad pathway, leading to fibrosis of the kidney. The conjugate combination of SUMO and p53 regulates cell proliferation and apoptosis, and participates in the regulation of tumorigenesis. In addition, SUMOylation of MITF modulates renal tumors secondary to melanoma, Similarly, SUMOylation of tumor suppressor gene VHL regulates the occurrence of renal cell carcinoma in VHL syndrome.
Conclusions:
Tissue injury, inflammatory responses, fibrosis, apoptosis, and tumor proliferation in kidney diseases all involve SUMOs. Further research of the substrate SUMOylation and regulatory mechanisms of SUMO in kidney diseases will improve and develop new treatment measures and strategies targeting kidney diseases.
Keywords: Small ubiquitin-related modifiers, SUMOylation, Kidney diseases
Introduction
Proteins are important substances that constitute biological structures and maintain activities necessary to sustain life. Among continuous in-depth studies of proteins, post-translational protein modifications (PTMs) have received extensive attention. PTMs include phosphorylation, acetylation, methylation, glycosylation, ubiquitination, and ubiquitin-like modifications,[1] among which ubiquitin-like modifications have become a focus of protein research in recent years.
Ubiquitin-like modifications are present extensively in eukaryotes. They are PTMs similar to protein ubiquitination that involve ubiquitin-like proteins (UBLs).[2] Small ubiquitin-related modifiers (SUMOs) are a group of molecules that modify UBLs. Although they exhibit a modification regulation process similar to ubiquitination, they have completely opposite functions. They increase the stability of substrate proteins through binding to corresponding substrates to further participate in transcriptional regulation, DNA repair, protein stability regulation, cell proliferation, and apoptosis.[3] SUMO molecules play important roles in the maintenance of protein functions. Lack of translational modification by SUMOs or abnormal regulation can also cause various diseases including cardiovascular diseases, neurodegenerative diseases, kidney diseases, and cancers. This article summarizes the relevant research on the role of SUMOs in kidney diseases.
SUMOs
SUMO family members
The SUMO family members are highly conserved PTM proteins in eukaryotes. Among the first group of SUMO members, SMT3 was first discovered in brewer's yeast, and PMT3 was discovered in budding yeast. They are mainly involved in the processes of mitosis and meiosis in cells. At least 8 types of paralogous genes are present in plants, and they play important roles in the maintenance of gene transcription, protein synthesis, and cell division.[4] SUMOs include 4 types of protein molecules in mammalian cells, SUMO-1, SUMO-2, SUMO-3, and SUMO-4.[5] SUMO-1 has a molecular weight of 11,600 and is composed of 101 amino acids. The amino acid sequences of SUMO-2 and SUMO-3 share 95% homology. These 2 proteins are only distinguished by 3 N-terminal amino acid residues with different functions. They share approximately 45% homology with SUMO-1.[6] Although SUMO-2 and SUMO-3 share relatively fewer homologous sequences with SUMO-1, their 3-dimensional structures have very high similarity. Under normal physiological conditions, SUMO-1 mainly binds to substrate proteins in cells. It is mainly expressed in the cell nucleus and perinuclear organelles and participates in many processes, such as nuclear transport, nuclear composition, signal transduction, transcriptional regulation, chromatin remodeling, DNA repair, and ribosomal composition.[3,7] SUMO-2 and SUMO-3 are mainly present in the nucleoplasm in a free state and only bind to substrates to exert corresponding functions after cells are stimulated.[8–10] SUMO-1, SUMO-2, and SUMO-3 all exhibit high expression levels in various types of tissues and organs. However, SUMO-4 exhibits a low level of expression in tissues, such as the kidney, spleen, and lymph nodes.[10] SUMO-4 was first discovered in an analysis of single nucleotide polymorphisms associated with type 1 diabetes mellitus.[10] It exhibits low expression levels under physiological conditions and rarely binds to substrate proteins, while its expression significantly increases when cells are subjected to oxidative stress and hypoxic injury. In addition, compared to SUMO-1, SUMO-2, and SUMO-3 exhibit faster reactions to various external stimuli.[11] Using HeLa cells as an example, SUMO-1 is resistant to physiological stress, and its reaction time during the conversion between substrate binding and dissociation is longer those that of SUMO-2 and SUMO-3.[12] In summary, structurally, SUMO-1, SUMO-2, and SUMO-3 all share certain homologous amino acid sequences, and SUMO-2 and SUMO-3 have high sequence similarity. Functionally, SUMO-1 is the major molecule that binds to various target proteins under physiological conditions to participate in various cellular processes, SUMO-2 and SUMO-3 bind to various substrate proteins to exert corresponding regulatory functions under physiological stress, and SUMO-4 may be a regulatory molecule that participates in cellular responses under pathological conditions.
The reaction process of SUMOylation
As the name suggests, the ubiquitin-like reaction exhibits a reaction process similar to that of ubiquitination. Although SUMOs only have 18% amino acid sequence identity with the ubiquitin molecule, they have an almost identical 3-dimensional structure, including a globular σ helix inside a β sheet.[13] In addition, they can expose the C-terminal diglycine residues after hydrolyzation by corresponding enzymes and bind to lysine residues of substrates to form isopeptide bonds,[14] thus exerting biological effects on the corresponding structural domains of the binding substrates.[15] Additionally, ubiquitin does not have a similar N-terminal residue structure to that of SUMO; therefore, ubiquitination and SUMOylation have completely opposite biological effects.[14]
The SUMOylation reaction consists of 3 continuous enzymatic reactions: the E1 enzyme activates SUMO, the activated SUMO binds to the E2 enzyme, and the E3 enzyme promotes the conjugation of SUMO to the substrate [Table 1]. First, several C-terminal amino acids of SUMOs are degraded by SUMO-specific proteases (SENPs) to expose the diglycine residues and become mature SUMOs.[16] Next, the diglycine residues of SUMOs bind to the cysteine residue of E1 activating enzymes (E1s) to form activated SUMOs that are modulated by ATP. E1s are ATP-dependent heterodimers constituted by the SUMO-activating enzyme subunit 1 (SAE1) and SAE2 subunits in human cells.[17] They can specifically recognize the only currently known substrate of E2 conjugating enzymes (E2s), ubiquitin conjugating enzyme 9 (Ubc9). Through a transesterification reaction, SUMOs are transferred to the cysteine residue of E2s to form a high-energy thioester bond.[17] Finally, under the catalytic function of E3 ligases (E3s), Ubc9 directly recognizes the conserved sequence Ψ-K-x-D/E (Ψ is a hydrophobic group, K is the lysine conjugated to SUMO, x is any amino acid, and D/E is an acidic amino acid consisting of aspartic acid or glutamic acid) of the substrate to conjugate SUMOs to lysine residues of substrates to form isopeptide bonds,[6] thus finally completing the specific binding between SUMOs and substrate proteins. Currently, Three types of E3 ligases have been discovered, Ran-binding protein 2 (RanBP2), the protein inhibitor of activated STAT (PIAS), and the polycomb protein 2 (Pc2). These ligases all have the ability to increase recognition between Ubc9 and substrates.[15] Furthermore, bound SUMOs can be dissociated from lysine residues of substrates by SENP to participate in SUMOylation [Figure 1]. This process is called de-SUMOylation.[18] Six types of reported SENPs, including SENP-1∼3 and SENP-5∼7, have been described. SENP-1/2 mainly dissociates SUMO-1∼3, SENP-3/5 mainly recognizes SUMO-2/3 and removes it from the substrate, and SENP-6/7 mainly edits poly-SUMO chains produced by SUMOylation.[3] In summary, SUMOylation and de-SUMOylation together constitute a complete reversible enzymatic reaction to further regulate various cellular biological processes through binding and dissociation of SUMOs and substrates.
Table 1.
The enzymes of SUMOylation in mammal cells.

Figure 1.

The process of SUMO modifications in mammal cells. First SUMO paralogues are cleaved by a SENP to expose a carboxy-terminal diglycine residues (GG). Second an ATP-requiring activation by the E1activating enzyme (SAE1 and SAE2) generates a high-energy thioester bond. SUMO is transferred to the E2 conjugating enzyme (Ubc9), forming a thioester. Final Ubc9 recognizes the conserved sequence Ψ-K-x-D/E (Ψ is a hydrophobic group, K is the lysine conjugated to SUMO, x is any amino acid, and D/E is an acidic amino acid consisting of aspartic acid or glutamic acid), and bring about an isopeptide bond between the SUMO and substrate protein catalyzed by E3 ligase.
SUMOs and kidney diseases
As many researches have revealed, SUMOylation has been recognized as a crucial post-translational modification, regulating protein stability, interaction, localization, and activation. SUMOylation has also served as a major modulation in cellular processes, including signal transduction, nuclear transport, transcriptional regulation, and genetic integrity. Similarly, SUMOylation is crucial for maintaining physiological process of kidney cells. Especially in maintaining the integrity of the filtration barrier, podocytes against oxidative stress injury, and regulating mesangial cell proliferation, etc. Because the regulation of these cellular processes involves multiple signaling pathways, and these abnormal pathways are closely associated with pathogenesis of kidney diseases, therefore we will elaborate on the SUMOs and kidney diseases in the next section.
SUMOylation and acute kidney injury (AKI)
AKI is a group of clinical syndromes characterized by acute injury and necrosis of tubular cells that eventually lead to abnormal kidney functions and structures. The clinical mortality rate is greater than 50%. The common etiologies are prerenal injury resulting from hypertension and heart failure, renal injury induced by infection and renal parenchyma, and postrenal injury caused by urethral obstruction.[19] Although many literature reports have described the pathogenesis of AKI, few biological studies have examined the role of protein SUMOylation in the pathophysiological changes of AKI. Guo et al[20] studied an ischemia/reperfusion-induced AKI mouse model to elucidate the dynamic changes of protein SUMOylation in AKI. During ischemic injury, the ATP-dependent SUMOylation level significantly reduces due to the depletion of cellular ATP, which can be restored after tissue reperfusion. In addition, the pathological process of cisplatin-induced AKI is usually accompanied by the development of cellular oxidative stress.[21] Oxidative stress promotes the generation of disulfide bonds between molecules to inactivate SUMO proteases, thus enhancing SUMOylation in cells;[22] however, moderate oxidative stress can induce cysteine residues of E1s and E2s to form disulfide bonds or promote the formation of disulfide bonds between protease regulatory molecules to stabilize the activity of SUMO proteases, thus inhibiting the SUMOylation process.[23] In a cisplatin-induced tubular cell experiment, use of the p53 inhibitor PFT-α could block the conjugation of SUMO-2/3; therefore, SUMOylation was inhibited, and apoptosis was decreased. However, ginkgolic acid, a SUMOylation inhibitor, can block binding between SUMOs and E1s to also inhibit SUMOylation and resist apoptosis.[20] SUMOylation of the mitochondrial fission protein Drp1 can block its accumulation in mitochondria and prevent mitochondrial fission, cytochrome C release, and apoptosis.[24] SUMO-2/3 can bind to nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha (IκBα) to induce SUMOylation and block its dissociation from nuclear factor-κB (NF-κB), thus inhibiting NF-κB activation and promoting cell survival.[25] SUMO-1 can bind to histone deacetylase 2 (HDAC2) to induce SUMOylation, thus causing deacetylation of p53, blocking the activation of the transcription of apoptotic genes, and reducing DNA damage-induced apoptosis.[26] Overall, SUMOylation mainly plays a protective role against cell necrosis and tissue injury in AKI through oxidative stress and the p53 signaling pathway. All the above studies suggest that SUMO has protective effects on renal tubular cells in AKI.
SUMOs and diabetic nephropathy (DN)
DN is a common complication characterized by microvascular lesions. Because of a lack of early diagnosis and treatment measures, it usually progresses to end-stage renal disease. The pathological process of DN involves many signaling pathways including the transforming growth factor beta (TGF-β) pathway, NF-κB pathway, and mitogen-activated protein kinase (MAPK) pathway. Relevant studies on the NF-κB pathway showed that the inflammatory response-related regulatory molecules in the NF-κB pathways, such as IκBα, NF- κB essential modulator (NEMO), RelA, and p100, can all have SUMOylation modifications.[27] SUMO-1 binds to the K21 and K22 sites of IκBα under the catalytic function of Ubc9 to prevent it from being degraded by ubiquitination and further inhibit NF-κB activation.[28] SUMO4 mainly participates in the regulation of the NF-κB signaling pathway in glomerular cells,[29] and SUMO-2 and SUMO-3 mediate NF-κB activation under high-glucose conditions.[30] p100 can also activate the NF-κB pathway after SUMOylation, and the SUMOylation of NEMO that involves SUMO-1 mainly regulates NF-κB activation during genotoxic reactions.[31] RelA, the other subunit of NF-κB, can undergo SUMOylation mediated by PIAS3 to inhibit NF-κB activation; while NF-κB inactivation has a negative regulatory function on SUMOylation.[31]
MAPK is an important pathway for transducing extracellular signals into cells. It participates in various cellular processes mainly by influencing the phosphorylation of substrates, while phosphorylation is closely associated with SUMOylation. Current research shows that de-SUMOylation of the transcription factor Elk1 can activate the ERK pathway.[32] Furthermore, SUMOs can bind to the central group of ERK5 to inhibit its transcription activity and participate in the regulatory process of endothelial cell dysfunction caused by diabetes mellitus.[33] PIAS mediates SUMOylation of tissue transglutaminase (TG2) to inhibit TG2 degradation by ubiquitination and maintain the biological activity of TG2, thus promoting cellular oxidative stress and chronic inflammatory responses.[34]
Recent studies have highlighted the importance of podocyte structure and function changes in the progression of diabetic nephropathy. The pathological changes of podocytes in diabetic nephropathy include an abnormality of podocyte hypertrophy, disappearance, and apoptosis. In addition, podocytes are essential for maintaining the function of the glomerular filtration barrier. SUMOylation is also involved in maintaining the normal function of podocytes. Tossidou et al[35] found that nephrin is a substrate modified by SUMO proteins in vitro and in vivo, increasing the steady-state level and expression at plasma membrane. The conversion of lysine at position 1100 of nephrin caused decreased stability and expression at plasma membrane. SUMOylation is a reversible process for turnover and localization of nephrin at the slit diaphragm. Wang et al[36] found SENP1 deficiency significantly increased the apoptosis of podocytes induced by puromycin aminonucleoside (PAN). SENP1 knockdown resulted in the SUMOylation of p53 protein, and increased the expression of p53-targeted HI, BAX, NOXA, and PUMA in podocytes. Therefore, SENP1 may protect the podocytes from apoptosis by regulating the SUMOylation of p53. In hypoxic, some studies have also found hypoxia blocked the proteasome degradation of hypoxia-inducible factor (HIF-1) in the cytoplasm and induced nuclear translocation and SUMOylation of HIF-1 in podocytes. SENP1 allowed HIF-1 to escape degradation and remained stable in the nucleus, promoting transcription of the downstream gene VEGF in hypoxia.[37]
In summary, SUMO involves the progression of DN through regulation of several signaling pathways, including NF-κB, TGF-β, Nrf2-oxidative stress, and MAPK. At the same time, SUMOylation is implicated in the podocyte injury process. These findings may reveal new points in therapeutic intervention for DN.
SUMOs and renal fibrosis diseases
The pathological processes of renal fibrosis mainly include glomerular and interstitial inflammatory cell infiltration and matrix deposition, which eventually lead to glomerular sclerosis and interstitial fibrosis. The TGF-β/Smad pathway mainly participates in the process of renal fibrosis. TGF-β can induce glomerular and tubular hypertrophy, promote extracellular matrix accumulation, and accelerate the progression of renal fibrosis.[38] SUMOylation of the Smad protein in the TGF-β pathway inhibits its transcriptional activation; whereas, TGF-β receptor SUMOylation can promote binding to its ligands to activate signaling pathways. SUMOylated Smad3 acts on PIASy to inhibit the TGF-β pathway. Smad4 can bind to SUMO-1 to induce SUMOylation, increase its stability, and promote transcriptional activation. In addition, SUMOylation of TGF-β receptor 1 (TβRI) increases its ligand recruitment ability and the phosphorylation level of Smad3 to further enhance receptor functions, promote transcriptional activation of TGF-β, and inhibit proliferation.[39] The proto-oncogenes c-Ski and SnoN inhibit the anti-proliferation function of TGF-β through interaction with Smads. SUMO-1 can bind to the K50 site of SnoN to induce SUMOylation under catalysis of PIAS1 and PIASx, whereas Arkadia can activate the TGF-β pathway through the degradation of SnoN/Ski.[40]
Based on these results, we may conclude that SUMO has made a significant contribution to renal fibrosis. Since TGF-β signaling plays a crucial role in the development of fibrosis, it is reasonable to predict that SUMO can regulate renal fibrosis through binding related molecules of the TGF-β pathway.
SUMOs and renal cell carcinoma
SUMOs bind to substrate proteins to influence their biological activities, thus further participating in physiological and pathological processes, such as cell proliferation, differentiation, senescence, and apoptosis. Many recent studies have reported that SUMOs are involved in the process of tumor formation. Although the specific mechanisms underlying the influences of SUMOs in tumor development are still not completely elucidated, many studies have indicated that SUMOs regulate tumor development by modifying various oncogenes and tumor suppressor genes to influence signal transduction of numerous signaling pathways such as those involved in the cell cycle, proliferation, and apoptosis pathways.
Epidemiological studies have shown that melanoma patients are prone to subsequent renal cell carcinoma. Much evidence has indicated that a genetic susceptibility exists between these 2 conditions.[41] The microphthalmia-associated transcription factor (MITF) is a familial transcription factor that plays an important role in the maintenance of melanocyte growth and differentiation and melanoma development.[42] MITF has a periodic missense substitution mutation, Mi-E318K. Its glutamine at the 318th site is replaced by lysine; therefore, the original SUMOylation IKQE sequence is changed to IKQK. Thus, SUMOylation of MTIF is blocked, ubiquitin-mediated MTIF degradation is promoted, melanin synthesis is affected, and tumor development is promoted.[43] In addition, MTIF (Mi-E318K) can activate transcription of the hypoxia-inducible factor HIF-1A. This factor can increase the ability of tumors to tolerate hypoxia and promote tumor proliferation.[44]
Von Hippel-Lindau (VHL) syndrome is an autosomal dominant hereditary disease involving multiple organ lesions caused by mutations in the tumor suppressor gene VHL. Its main manifestations are central nervous system disease, retinoblastoma, renal hemangioma, renal cell carcinoma, and pheochromocytoma.[45] The VHL gene is located in the chromosome 3p25–26 region. Its mutations cause expression disorders of the tumor suppressor protein pVHL and induce the development of tumors of multiple systems. SUMO-1 and SUMO-2 bind to the K171 site of pVHL to induce SUMOylation and inhibit pVHL degradation.[46] In addition, the RWDD3 gene-encoded product RWD domain-containing protein SUMO Enhancer (RSUME) can promote SUMOylation of pVHL to block its binding to Elongins and Cullins (ECV) to form the ubiquitin-proteasome complex, thus inhibiting HIF-1 degradation and promoting tumor development.[47]
In total, these studies only initially involved the various kidney diseases regulated by in SUMOs, and some questions and modified mechanism in kidney are still controversial. The regulation of SUMO modification in the progression of kidney disease and SUMOylation site still needs further to research and confirm.
Discussion and perspective
Research on SUMO constantly updates people's understanding of its regulatory effects. SUMO has been established as a modifier to regulate cell function. By combining different substrate proteins, the degradation of the protease system is prevented, increasing the stability and promoting the expression of a series of signal molecules, thus regulating various physiological functions of the cells. Moreover, many studies have found sumo is closely involved in the development of cardiac disease, neurodegenerative disease, cancer, and innate immunity. SUMO is closely associated with the pathogenesis of kidney disease. SUMO participates in the activation of NF-κB inflammatory signaling pathway, playing a central regulatory role in the inflammation and progression of DN, and the secretion of various chemokines in AKI. SUMO involves in the regulation of TG2 and Nrf2 antioxidant stress,[27] affecting renal tubular injury in AKI. SUMO affects the MAPK/ERK pathway, regulating intracellular signal transduction, modulating the transcription and expression of effector molecules in DN. SUMO contributes to the TGF-β/Smad pathway, leading to fibrosis of the kidney. SUMO interacts with HIF-1, participating in chronic hypoxia-induced renal injury. The conjugate combination of SUNO and p53 regulates cell proliferation and apoptosis, and participates in the regulation of tumorigenesis. In addition, SUMOylation of MITF modulates renal tumors secondary to melanoma, Similarly, SUMOylation of tumor suppressor gene VHL regulates the occurrence of renal cell carcinoma in VHL syndrome [Figure 2A–2D].
Figure 2.

The major mechanisms regulated by SUMOs and SUMOylation in kidney disease. (A) SUMO participates in the activation of NF-κB inflammatory signaling pathway. (B) SUMO contributes to the TGF-β/Smad pathway (C) SUNO conjugated with p53 modulate cell proliferation and apoptosis. (D) SUMO and SENP regulate HIF-1 in hypoxia-induced renal injury.
In addition to the pathways above, the close relationship between SUMOylation and autophagy should be concerned. Autophagy is a conserved multistep pathway that degrades and recycles damaged organelles to maintain intracellular homeostasis.[48] The autophagy pathway is upregulated under stress conditions including cell starvation, hypoxia injury, nutrient deprivation, endoplasmic reticulum stress, and oxidant stress, which are involved in the pathogenesis of kidney disease.[49] Thus, regarding SUMOylation and kidney disease, it is reasonable to anticipate that SUMOylation may contribute to the autophagy mechanism of kidney disease. Moreover, protein modification with the SUMO can affect protein function, protein stability protein interactions, and protein targeting localization. SUMOylation plays a key role in nutrient and metabolic mechanisms that influence cellular metabolism. There is increasing evidence that SUMO is a key component of the regulation of the fundamental metabolic processes, including energy and nucleotide metabolism.[23] Therefore, we must also emphasize the potential role of SUMO in metabolic regulation in renal injury. However, there are currently few researches about the pathway and specific molecules of regulating metabolism under conditions of metabolic stress in renal. Further research is needed by the majority of nephropathy researchers to understand the relationship between SUMO and metabolism in the kidney's physiological and pathological environment.
Although few researches regarding the treatment of kidney disease in SUMO, there are still some studies indicating the hydrolyzing enzymes and SENP have been applied to the pathological changes in kidney disease. For example, the above mentioned that SENP1 can inhibit the degradation of HIF-1α by SUMOylation, promoting the expression of HIF-1 in the nucleus of podocytes, thus increasing the secretion of VEGF by podocytes and improve the ability of endothelial cells against hypoxia injury.[37] Ginkgolic acid, a SUMO inhibitor, was used to reduce apoptosis by p53 SUMOylation.[36] SUMO also plays an important role in the development of renal tumors caused by genetic diseases. SENP and SUMO inhibitors may also be applied in targeted therapy of kidney tumors, with the development of SUMOylzation and the discovery of novel SUMO inhibitors, new therapeutic methods and strategies based on SUMOylation will be discovered in the near future.
Conclusions
In summary, PTM of substrates by SUMOs is an indispensable process by which proteins participate in life-sustaining activities. The dynamic balance between SUMOylation and ubiquitination regulates the expression of signaling molecules in various physiological and pathological processes to maintain normal functions of cellular activities. Abnormal SUMOylation or de-SUMOylation processes of proteins directly result in changes in the expression of corresponding substrate proteins to further activate signaling pathways in which each molecule is located, induce a series of pathological responses, and eventually cause the development of various diseases. Regulation of the SUMOylation modification also plays an indispensable role in kidney diseases. Tissue injury, inflammatory responses, fibrosis, apoptosis, and tumor proliferation in kidney diseases all involve SUMOs. We have reasons to believe that with the continuous in-depth studies on substrate SUMOylation and continuous increases in the understanding on the regulatory mechanisms of SUMO in kidney diseases in the near future, new treatment measures and strategies targeting kidney diseases will be developed.
Funding
This research was supported by grants from the National Natural Science Foundation of China (No. 81870491 and No.81330019) and the Major State Basic Research Development Program of China (No. 2014CBA02005).
Conflicts of interest
None.
Footnotes
How to cite this article: Li O, Ma Q, Li F, Cai GY, Chen XM, Hong Q. Progress of small ubiquitin-related modifiers in kidney diseases. Chin Med J 2019;00:00–00. doi: 10.1097/CM9.0000000000000094
References
- 1.Hirano A, Fu YH, Ptáček LJ. The intricate dance of post-translational modifications in the rhythm of life. Nat Struct Mol Biol 2016; 23:1053–1060. doi: 10.1038/nsmb.3326. [DOI] [PubMed] [Google Scholar]
- 2.Kerscher O, Felberbaum R, Hochstrasser M. Modification of proteins by ubiquitin and ubiquitin-like proteins. Annu Rev Cell Dev Biol 2006; 22:159–180. [DOI] [PubMed] [Google Scholar]
- 3.Wilkinson KA, Henley JM. Mechanisms, regulation and consequences of protein SUMOylation. Biochem J 2010; 428:133–145. doi: 10.1042/BJ20100158. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 4.Kurepa J, Walker JM, Smalle J, Gosink MM, Davis SJ, Durham TL, et al. The small ubiquitin-like modifier (SUMO) protein modification system in Arabidopsis. Accumulation of SUMO1 and -2 conjugates is increased by stress. J Biol Chem 2003; 278:6862–6872. doi: 10.1074/jbc.M209694200. [DOI] [PubMed] [Google Scholar]
- 5.Enserink JM. Sumo and the cellular stress response. Cell Div 2015; 10:4.doi: 10.1186/s13008-015-0010-1. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6.Mukhopadhyay D, Dasso M. Modification in reverse: the SUMO proteases. Trends Biochem Sci 2007; 32:286–295. doi: 10.1016/j.tibs.2007.05.002. [DOI] [PubMed] [Google Scholar]
- 7.Gareau JR, Lima CD. The SUMO pathway: emerging mechanisms that shape specificity, conjugation and recognition. Nat Rev Mol Cell Biol 2010; 11:861–871. doi: 10.1038/nrm3011. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 8.Coey CT, Fitzgerald ME, Maiti A, Reiter KH, Guzzo CM, Matunis MJ, et al. E2-mediated small ubiquitin-like modifier (SUMO) modification of thymine DNA glycosylase is efficient but not selective for the enzyme-product complex. J Biol Chem 2014; 289:15810–15819. doi: 10.1074/jbc.M114.572081. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 9.Praefcke GJ, Hofmann K, Dohmen RJ. SUMO playing tag with ubiquitin. Trends Biochem Sci 2012; 37:23–31. doi: 10.1016/j.tibs.2011.09.002. [DOI] [PubMed] [Google Scholar]
- 10.Zhang J, Chen Z, Zhou Z, Yang P, Wang CY. Sumoylation modulates the susceptibility to type 1 diabetes. Adv Exp Med Biol 2017; 963:299–322. doi: 10.1007/978-3-319-50044-7_18. [DOI] [PubMed] [Google Scholar]
- 11.Feligioni M, Nistico R. SUMO: a (oxidative) stressed protein. Neuromolecular Med 2013; 15:707–719. doi: 10.1007/s12017-013-8266-6. [DOI] [PubMed] [Google Scholar]
- 12.Ayaydin F, Dasso M. Distinct in vivo dynamics of vertebrate SUMO paralogues. Mol Biol Cell 2004; 15:5208–5218. doi: 10.1091/mbc.E04-07-0589. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 13.Zheng N, Shabek N. Ubiquitin ligases: structure, function, and regulation. Annu Rev Biochem 2017; 86:129–157. doi: 10.1146/annurev-biochem-060815-014922. [DOI] [PubMed] [Google Scholar]
- 14.Liebelt F, Vertegaal AC. Ubiquitin-dependent and independent roles of SUMO in proteostasis. hysiol Cell Physiol 2016; 311:C284–C296. doi: 10.1152/ajpcell.00091.2016. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 15.Henley JM, Craig TJ, Wilkinson KA. Neuronal SUMOylation: mechanisms, physiology, and roles in neuronal dysfunction. Physiol Rev 2014; 94:1249–1285. doi: 10.1152/physrev.00008.2014. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 16.van der Veen AG, Ploegh HL. Ubiquitin-like proteins. Annu Rev Biochem 2012; 81:323–357. doi: 10.1146/annurev-biochem-093010-153308. [DOI] [PubMed] [Google Scholar]
- 17.Desterro JM, Thomson J, Hay RT. Ubch9 conjugates SUMO but not ubiquitin. FEBS Lett 1997; 417:297–300. [DOI] [PubMed] [Google Scholar]
- 18.Takahashi Y, Kahyo T, Toh EA, Yasuda H, Kikuchi Y. Yeast Ull1/Siz1 is a novel SUMO1/Smt3 ligase for septin components and functions as an adaptor between conjugating enzyme and substrates. J Biol Chem 2001; 276:48973–48977. doi: 10.1074/jbc.M109295200. [DOI] [PubMed] [Google Scholar]
- 19.Agarwal A, Dong Z, Harris R, Murray P, Parikh SM, Rosner MH, et al. Cellular and molecular mechanisms of AKI. J Am Soc Nephrol 2016; 27:1288–1299. doi: 10.1681/ASN.2015070740. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 20.Guo C, Wei Q, Su Y, Dong Z. SUMOylation occurs in acute kidney injury and plays a cytoprotective role. Biochim Biophys Acta 2015; 1852:482–489. doi: 10.1016/j.bbadis.2014.12.013. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 21.Ozkok A, Edelstein CL. Pathophysiology of cisplatin-induced acute kidney injury. Biomed Res Int 2014; 2014:967826.doi: 10.1155/2014/967826. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 22.Marinho HS, Real C, Cyrne L, Soares H, Antunes F. Hydrogen peroxide sensing, signaling and regulation of transcription factors. Redox Biol 2014; 2:535–562. doi: 10.1016/j.redox.2014.02.006. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 23.Kamynina E, Stover PJ. The roles of SUMO in metabolic regulation. Adv Exp Med Biol 2017; 963:143–168. doi: 10.1007/978-3-319-50044-7_9. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 24.Guo C, Wilkinson KA, Evans AJ, Rubin PP, Henley JM. SENP3-mediated deSUMOylation of Drp1 facilitates interaction with Mff to promote cell death. Sci Rep 2017; 7:43811.doi: 10.1038/srep43811. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 25.D’Ignazio L, Bandarra D, Rocha S. NF-κB and HIF crosstalk in immune responses. FEBS J 2016; 283:413–424. doi: 10.1111/febs.13578. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 26.Wagner T, Kiweler N, Wolff K, Knauer SK, Brandl A, et al. Sumoylation of HDAC2 promotes NF-κB-dependent gene expression. Oncotarget 2015; 6:7123–7135. doi: 10.18632/oncotarget.3344. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27.Gao C, Huang W, Kanasaki K, Xu Y. The role of ubiquitination and sumoylation in diabetic nephropathy. Biomed Res Int 2014; 2014:160692.doi: 10.1155/2014/160692. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 28.Liu X, Chen W, Wang Q, Li L, Wang C. Negative regulation of TLR inflammatory signaling by the SUMO-deconjugating enzyme SENP6. PLoS Pathog 2013; 9:e1003480.doi: 10.1371/journal.ppat.1003480. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 29.Zhou X, Gao C, Huang W, Yang M, Chen G, Jiang L, et al. High glucose induces sumoylation of Smad4 via SUMO2/3 in mesangial cells. Biomed Res Int 2014; 2014:782625.doi: 10.1155/2014/782625. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30.Huang W, Xu L, Zhou X, Gao C, Yang M, Chen G, et al. High glucose induces activation of NF-κB inflammatory signaling through IκBα sumoylation in rat mesangial cells. Biochem Biophys Res Commun 2013; 438:568–574. doi: 10.1016/j.bbrc.2013.07.065. [DOI] [PubMed] [Google Scholar]
- 31.Liu J, Tao X, Zhang J, Wang P, Sha M, Ma Y, et al. Small ubiquitin-related modifier 1 is involved in hepatocellular carcinoma progression via mediating p65 nuclear translocation. Oncotarget 2016; 7:22206–22218. doi: 10.18632/oncotarget.8066. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 32.Besnard A, Galan-Rodriguez B, Vanhoutte P, Caboche J. Elk-1 a transcription factor with multiple facets in the brain. Front Neurosci 2011; 5:35.doi: 10.3389/fnins.2011.00035. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 33.Heo KS, Chang E, Le NT, Cushman H, Yeh ET, Fujiwara K. De-SUMOylation Enzyme of Sentrin/SUMO-Specific Protease 2 (SENP2) Regulates Disturbed Flow-Induced SUMOylation of ERK5 and p53 that Leads to Endothelial Dysfunction and Atherosclerosis. Circ Res 2013; 112:911–923. doi: 10.1161/CIRCRESAHA.111.300179. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 34.Luciani A, Villella VR, Vasaturo A, Giardino I, Raia V, Pettoello-Mantovani M, et al. SUMOylation of tissue transglutaminase as link between oxidative stress and inflammation. J Immunol 2009; 183:2775–2784. doi: 10.4049/jimmunol.0900993. [DOI] [PubMed] [Google Scholar]
- 35.Tossidou I, Himmelseher E, Teng B, Haller H, Schiffer M. SUMOylation determines turnover and localization of nephrin at the plasma membrane. Kidney Int 2014; 86:1161–1173. doi: 10.1038/ki.2014.198. [DOI] [PubMed] [Google Scholar]
- 36.Wang L, Zhu J, Fang M, Zhang T, Xie H, Wang N, et al. Inhibition of p53 deSUMOylation exacerbates puromycin aminonucleoside-induced apoptosis in podocytes. Int J Mol Sci 2014; 15:21314–21330. doi: 10.3390/ijms151121314. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 37.Wang L, Zhang T, Fang M, Shen N, Wang D, Teng J, et al. Podocytes protect glomerular endothelial cells from hypoxic injury via deSUMOylation of HIF-1α signaling. Int J Biochem Cell Biol 2015; 58:17–27. doi: 10.1016/j.biocel.2014.10.030. [DOI] [PubMed] [Google Scholar]
- 38.Liu S, Long J, Yuan B, Zheng M, Xiao M, Xu J, et al. SUMO modification reverses inhibitory effects of smad nuclear interacting protein-1 in TGF-β responses. J Biol Chem 2016; 291:24418–24430. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 39.Lee SH, Kim PH, Oh SM, Park JH, Yoo YC, Lee J, et al. SUMO proteins are not involved in TGF-β1-induced, Smad3/4-mediated germline α transcription, but PIASy suppresses it in CH12F3-2A B cells. Immune Netw 2014; 14:321–327. doi: 10.4110/in.2014.14.6.321. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 40.Erker Y, Neyret-Kahn H, Seeler JS, Dejean A, Atfi A, Levy L, et al. Arkadia, a novel SUMO-targeted ubiquitin ligase involved in PML degradation. Mol Cell Biol 2013; 33:2163–2177. doi: 10.1128/MCB.01019-12. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 41.Queirolo P, Spagnolo F. Atypical responses in patients with advanced melanoma, lung cancer, renal-cell carcinoma and other solid tumors treated with anti-PD-1 drugs: a systematic review. Cancer Treat Rev 2017; 59:71–78. doi: 10.1016/j.ctrv.2017.07.002. [DOI] [PubMed] [Google Scholar]
- 42.Bertolotto C, Lesueur F, Giuliano S, Strub T, de Lichy M, Bille K, et al. Corrigendum: A SUMOylation-defective MITF germline mutation predisposes to melanoma and renal carcinoma. Nature 2016; 531:126.doi: 10.1038/nature16158. [DOI] [PubMed] [Google Scholar]
- 43.Bradford PT, Freedman DM, Goldstein AM, Tucker MA. A germline oncogenic MITF mutation and tumor susceptibility. Eur J Cell Biol 2014; 93:71–75. doi: 10.1016/j.ejcb.2013.10.002. [DOI] [PubMed] [Google Scholar]
- 44.Stoehr CG, Walter B, Denzinger S, Ghiorzo P, Sturm RA, Hinze R, et al. The microphthalmia-associated transcription factor p. E318K mutation does not play a major role in sporadic renal cell tumors from caucasian patients. Pathobiology 2016; 83:165–169. doi: 10.1159/000443311. [DOI] [PubMed] [Google Scholar]
- 45.Lee JH, Elly C, Park Y, Liu YC. E3 ubiquitin ligase VHL regulates hypoxia-inducible factor-1α to maintain regulatory T cell stability and suppressive capacity. Immunity 2015; 42:1062–1074. doi: 10.1016/j.immuni.2015.05.016. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 46.Sinha S1, Mondal G, Hwang EJ, Han da W, Dutta SK, Iyer S, et al. Von Hippel-Lindau gene product directs cytokinesis: a new tumor suppressor function. J Cell Sci 2011; 124 (Pt 13):2132–2142. doi: 10.1242/jcs.087122. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 47.Gerez J, Tedesco L, Bonfiglio JJ, Fuertes M, Barontini M, Silberstein, et al. SRSUME inhibits VHL and regulates its tumor suppressor function. Oncogene 2015; 34:4855–4866. doi: 10.1038/onc.2014.407. [DOI] [PubMed] [Google Scholar]
- 48.Lin F. Autophagy in renal tubular injury and repair. Acta Physiol (Oxf) 2017; 220:229–237. doi: 10.1111/apha.12852. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 49.Kaushal GP, Shah SV. Autophagy in acute kidney injury. Kidney Int 2016; 89:779–791. doi: 10.1016/j.kint.2015.11.021. [DOI] [PMC free article] [PubMed] [Google Scholar]
