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Annals of Translational Medicine logoLink to Annals of Translational Medicine
. 2019 Jun;7(12):258. doi: 10.21037/atm.2019.05.16

The molecular epidemiology of hyperphenylalaninemia in Uygur population: incidence from newborn screening and mutational spectra

Yajie Su 1,#, Huijun Wang 2,#, Nuerya Rejiafu 1, Bingbing Wu 2,3, Haili Jiang 1, Hongbo Chen 2, Xian A 1, Yanyan Qian 2, Mingzhu Li 1, Yulan Lu 2, Yan Ren 1, Long Li 1,, Wenhao Zhou 2,3,
PMCID: PMC6614323  PMID: 31355225

Abstract

Background

Neonatal hyperphenylalaninemia (HPA) screening did not begin until 2009 in the Uygur population because of poor medical and economic conditions. This study intended to investigate HPA incidence rate and characterize mutation spectrum of phenylalanine hydroxylase (PAH) gene within the Uygur population.

Methods

Cross-sectional data of National Direct Reporting System database from 2009 to 2016 were used to calculate incidence rate. All HPA positive newborns were diagnosed and confirmed by Sanger sequencing. A low Phe diet was implemented.

Results

A total of 580,608 Uygur neonates were screened, 111 were diagnosed with HPA with an incidence rate of 1:5,230, 58 different mutations in PAH gene were detected. Eight novel variants were found, including two nonsense mutations (L11*, L197*), two splicing mutations (IVS12-2A > C, IVS13-1G > A), one frameshift mutation (K115 > Hfs) and three missense mutations (E368K, E370G, D435V), distributing in twenty patients. A104D was the most frequent mutation in this study, and the other hot spot of R413P was found in 4 patients in a same Uygur village with a carrier rate of 1:2.1.

Conclusions

This is the first study to investigate HPA incidence rate in the Uygur population. Our study highlights regional differences in PAH genotypes and mutation rates.

Keywords: Phenylalanine hydroxylase (PAH), Uygur, neonatal screening, gene mutation, genotyping

Introduction

Different from the Han Chinese, the Uygur population originated from the Dingling, Tiele and Uighur ethnic groups, who live in the south of Junggar Basin in Northwest China which is a part of the ancient Silk Road. The Uygur population harbors an extensive genetic admixture of the human population. Newborn screening for hyperphenylalaninemia (HPA) was initiated in 1964 and subsequently adopted in 1981 in mainland China (1). The incidence of HPA is approximately 1/15,000 in newborns worldwide (2). The incidence varies among ethnic and geographical regions. For example, the incidence in Turkey is 1/2,600, Ireland is 1/4,500, China is 1/15,415 (http://zhibao2.xsesc.cn/Login.aspxl), Japan is 1/143,000, and Finland is 1/200,000 (3-6). In Uygur communities with poor economic and medical development, the HPA screening did not begin until 2009. Even today, the screening rate has not yet reached 100%, but a remarkable number of Uygur children have already been diagnosed with PKU in clinics.

HPA is a common autosomal recessive inborn error of amino acid metabolism that primarily results from mutations in the phenylalanine hydroxylase (PAH) gene. About 955 different PAH variants are recorded in database (http://www.biopku.org). The wide variability in the common mutations among ethnic groups and geographical areas makes PAH deficient with great allelic heterogeneity (7). PAH enzyme activity deficiencies result in the inability to convert phenylalanine (Phe) into tyrosine (Tyr), leading to an increased concentration of Phe in the blood and central nervous system. When the blood Phe levels rise above 360 µmol/L, a restrictive low Phe diet needs to be implemented immediately for patients in order to prevent progressively aggravated mental retardation, seizure disorders, and eczema (8). It has been recommended that blood Phe levels need to be controlled between 120 and 600 µmol/L for different age groups (9). So far, a wide array of new treatments such as cell directed therapy, gene therapy and enzyme therapy were performed to PKU patients.

Accordingly, our study aims to systematically analyse the incidence, PAH mutational spectrum, and the follow-up of the Uygur population from January 2010 to December 2016 who live in the southern Junggar Basin in Northwest China. Consequently, we uncovered geographical and ethnic differences in the HPA mutation profile between the places in Northwest China and some other regions and provided guidance for the molecular epidemiology diagnosis of patients with PKU in Uygur population.

Methods

Ethics statement

All procedures performed in this study involving human participants follows the ethical standards of the institutional and/or national research committee and with the 1964 Helsinki declaration and its later amendments or comparable ethical standards. Informed consent was obtained from individual participants included in the study.

Database and population

We used the National Direct Reporting System for Neonatal Disease Screening database to obtain neonatal birth and screening data from January 2010 to December 2016 (http://zhibao2.xsesc.cn/Login.aspxl). The Uygur screening population data from January 2013 to December 2016 was obtained from the Newborn Disease Screening System of the Xinjiang Uygur Autonomous Region (http://202.85.214.55:5888/login.screen). Also, we manually searched the Uygur screening population registry from January 2010 to December 2012. This study was reviewed and approved by the Human Ethics Committee of the People’s Hospital of Xinjiang Uygur Autonomous Region (2017010).

Sample size calculation

We used the cross-sectional study method to calculate the annual gross incidence rate according to the following formula:

Incidence rate=Number of individuals people who have a disease or conditionNumber of people at risk × time period at risk [1]

We assume that the word “people” above refers to a group with no relatives included because the number of relatives is negligible as the denominator is very large. Therefore we removed the patients’ relatives from the numerator.

x=Zα22π(1π)δ2 [2]

N = number; Z = standard normal distribution boundary value; α=0.05, Zα/2=1.96; α=0.01, Zα/2=2.58; π= expected incidence rate; and δ = admissible error.

Subjects

The Phe levels on dried blood spots were initially quantified using the Guthrie test. The cut off level is 120 µmol/L. When the Phe values were >120 µmol/L at two times, the child would be recalled to our hospital. Tandem mass-spectrometry (TMS), urinary pterin analysis, and determination of DHPR activity were ordered. When the values of Phe at TMS were >120 µmol/L and Phe/Tyr ratio >2.00, it suggested HPA. Then we would determine whether the patients had BH4 deficiency and distinguish the subgroups of them, based on the following indicators, the basic urinary neopterin whose normal value was 0.29–2.61 (mmol/mol Cr), biopterin whose normal value was 0.35–2.67 (mmol/mol Cr), and DHPR whose normal activity was 1.02–3.35 nmol/min/ (5 mmdisc). According to their pretreatment plasma Phe levels, all patients were assigned to one of the three phenotypic categories: Phe levels over 1,200 µmol/L were generally termed “classical Phenylketonuria (cPKU)”, Phe levels of 360–1,200 µmol/L were termed “moderate PKU (mPKU)”, and Phe levels of 120–360 µmol/L were termed “mild hyperphenylalaninemia (MHP)”. Parents and siblings were also investigated to confirm their carrier status.

Treatment and follow-up

Patients with Phe levels above 360 µmol/L under uncontrolled protein intake, should be treated immediately via restricting dietary Phe, while ensuring sufficient calories and protein to meet the needs for children’s growth. According to preliminary screening of Phe concentrations, infants were treated with specialized low Phe milk powder, with low Phe staple food provided after six months and low Phe protein powder could be given from birth to 10 years. We adjusted each child’s diet according to their initial blood Phe concentration and monitored blood Phe for three days after each dietary adjustment. When achieving stable control of Phe levels, monitoring periods would be properly adjusted. A target blood Phe levels of: 120–240 µmol/L was safe for children less than one year old; 120–360 µmol/L was safe for children more than one year old (2,10,11).

Sanger sequencing and capture-based next-generation deep sequencing

Two mL blood samples were collected from patients and their parents. DNA isolation was performed using the QIAamp DNA Blood Mini Kit [250] (QIAGEN, Vienna, Austria). PCR primers were designed to amplify thirteen exons and ten base pairs boundary of the PAH gene. PCR products were sequenced, and data were analyzed using Mutation Survey or Software (SoftGenetics, State College, PA, USA) with the reference to PAH RefSeq NM_000277.1.

Genome DNA was captured using Agilent ClearSeq Inherited Disease kit and sequenced by Illumina XTen system by WuXi NextCODE Genomics Company, and an average coverage of 200× was obtained. Data analyses were performed by the bioinformatics team in our clinical genetic laboratory. Mutations and parental carriers were validated by Sanger sequencing using an ABI 3730 Genetic Analyzer (Applied Biosystems, Foster City, CA, USA).

Results

Incidence of HPA within the Uygur population

From 2010 to 2016, the screening rate in Uygur population increased from an average of 79% to 83% (Figure 1). A total of 669,832 neonates were screened for HPA, including 580,608 Uygur neonates, 128 non-relative neonates were diagnosed with HPA, including 111 Uygur neonates. In 2010, only 1,969 individuals in Uygur were screened, no HPA patients were detected. From 2011 to 2016, yearly incidence rates varied widely, ranging from 1:1,917 to 1:9,522. The average HPA incidence rate within Uygur population was 1:5,230 (Table 1).

Figure 1.

Figure 1

Screening rate in Uygur population. Newborn baby screening was performed, about 86.7% of the residents are Uygur population. From 2010 to 2016, the screening rate in Uygur population has gradually increased from an average of 79% to 83%. The color bar in the low-right side means the darker the more population screened.

Table 1. HPA incidences in 2010–2016 in the Xinjiang Uygur population.

Year Total birth population Screening population Uygur screening population Numbers of total cases diagnosed Numbers of Uygur cases diagnosed Total incidencea Uygur incidencea
2010 37,935b 5,351 1,969
2011 212,011 17,570 9,215 5 4 1:3,514 1:2,304
2012 267,340 47,163 36,417 24 19 1:1,965 1:1,917
2013 284,668 95,387 82,313 18 16 1:5,299 1:5,145
2014 308,618 130,450 114,269 15 12 1:8,697 1:9,522
2015 307,150 192,633 173,822 31 31 1:6,214 1:5,607
2016 217,117 181,278 162,603 35 29 1:5,179 1:5,607
Total 1,634,839 669,832 580,608 128 111 1:5,233 1:5,230

a, incidence = numbers/live births; b, the number of live births was obtained from institutions that carried out screenings in 2010. This number does not reflect the total number of live births in Xinjiang in 2010. HPA, hyperphenylalaninemia.

Demographics of the diagnosed patients

A total of 111 Uygur patients (54 males and 57 females) with HPA were detected. The age of diagnosis ranged from fifty-four days to eight years and the patients were classified based on plasma Phe levels before treatment. Among them, 34.23% (38/111) presented as classical PKU; 50.45% (57/111) had moderate PKU, and 14.41% (16/111) were categorized as MHP and 0.9% (1/111) was presented as BH4 deficiency.

PAH mutational spectrum

PAH variants were detected in 110 individuals among the 111 HPA patients by Sanger sequencing, reaching a 99.1% positive rate. Seven individuals had only one heterozygous PAH mutation been detected (6.37%). Among the seven patients, four have MHP and three have mPKU. Given the recessive inheritance pattern of PAH deficiency and the limited coverage of non-coding regions by current methods, we speculate that another allele mutation might locate in the deep introns or non-coding regions. The one PAH negative case then underwent capture-based next-generation deep sequencing for exploring other possible disease etiologies. Our analysis revealed that this individual has a homozygous mutation in QDPR gene, which is associated with tetrahydrobiopterin deficiency (BH4 deficiency): another manifestation of PKU. The clinical phenotype of BH4 deficiency is more serious than that of PAH deficiency. It’s congruent with the phenotypes of this patient, who showed hypotonia, seizures and mental retardation.

Overall, 58 unique PAH mutations were detected, including thirty-five missense mutations, nine splicing mutations, nine nonsense mutations, one inframe deletion, and one frameshift mutation. Mutations were distributed in all exons except exon 13. Exons 7 had the highest number of mutations (Table 2). A104D in exon 3 was the most prevalent hot spot mutation in the Uygur population (8.41%). Other hot-spot mutations with ten or more than ten alleles in our dataset were marked (Table 2 with &). Comparison of these mutation frequencies based on published literatures (12-20), among countries is shown in Figure 2. R413P and R243Q are the hot spot mutations of Chinese and American population, IVS10-11G > A is the hot spot of Iranian and Turkish. However, R53H and A104D are specific in Uygur patients. Seven known PAH polymorphisms were also detected: IVS2+19T > C (33.3%), IVS4+47C > T (47.8%), IVS4-22C > T (42.4%), IVS9+43G > T (36.1%), p.Q232Q (64%), p.L385L (98.7%), and p.V245V (54.4%).

Table 2. PAH mutations identified in Uygur HPA patients.

No. Base change Amino acid Mutation type Exon Homozygote/heterozygote Alleles (allele frequency %) Allele in subclinical type
MHP mPKU cPKU
1 c.311C > A& p.A104D& Missense E3 4/11 19 (8.41) 1 10 4
2 c.1238G > C& p.R413P& Missense E12 3/12 18 (7.96) 1 6 8
3 c.728G > A& p.R243Q& Missense E7 0/15 15 (6.64) 3 5 7
4 c.1066-11G > A& IVS10-11G > A& Splice I10 3/8 14 (6.19) 0 6 5
5 c.158G > A& p.R53H& Missense E2 2/8 12 (5.31) 4 5 1
6 c.1316-1G > A#,& IVS13-2G > A#,& Splice I13 3/4 10 (4.42) 0 5 2
7 c.688G > A p.V230I Missense E6 0/7 7 (3.10) 4 3 0
8 c.898G > T p.A300S Missense E8 0/7 7 (3.10) 3 4 0
9 c.1200-2A > C# IVS12-2A > C# Splice I12 0/7 7 (3.10) 0 2 5
10 c.1301C > A p.A434D Missense E12 2/3 7 (3.10) 1 4 0
11 c.1199+1G > C IVS11+1G > C Splice I11 1/4 6 (2.65) 0 2 3
12 c.781C > T p.R261* Nonsense E7 1/4 6 (2.65) 0 1 4
13 c.611A > G p.EX6-96A > G Splice E6 1/4 6 (2.65) 0 1 4
14 c.208_210delTCT p.S70del Deletion E3 3/0 6 (2.65) 0 3 0
15 c.782G > A p.R261Q Missense E7 3/0 6 (2.65) 0 2 1
16 c.331C > T p.R111* Nonsense E3 1/2 4 (1.77) 0 2 1
17 c.1222C > T p.R408W Missense E12 1/2 4 (1.77) 0 1 2
18 c.355C > T p.P119S Missense E4 0/3 3 (1.33) 2 1 0
19 c.544G > A p.E182K Missense E6 0/3 3 (1.33) 0 3 0
20 c.722G > A p.R241H Missense E7 0/3 3 (1.33) 1 2 0
21 c.1169A > G p.E390G Missense E11 0/3 3 (1.33) 1 2 0
22 c.1197A > T p.V399V Splice E11 0/3 3 (1.33) 0 2 1
23 c.440C > T p.P147L Missense E4 1/1 3 (1.33) 0 1 1
24 c.482T > C p.F161S Missense E5 1/1 3 (1.33) 0 1 1
25 c.1042C > G p.L348V Missense E10 1/1 3 (1.33) 0 0 2
26 c.1252A > C p.T418P Missense E12 1/1 3 (1.33) 1 1 0
27 c.1289T > C p.L430P Missense E12 1/1 3 (1.33) 0 2 0
28 c.838G > A p.E280K Missense E7 0/2 2 (0.88) 0 2 0
29 c.842+2T > A IVS7+2T > A Splice I7 0/2 2 (0.88) 1 1 0
30 c.1068C > A p.Y356* Nonsense E11 0/2 2 (0.88) 0 1 1
31 c.727C > T p.R243* Nonsense E7 0/2 2 (0.88) 0 1 1
32 c.441+5G > T IVS4+5G > T Splice I4 1/0 2 (0.88) 0 0 1
33 c.143T > C p.L48S Missense E2 1/0 2 (0.88) 0 1 0
34 c.498C > G p.Y166* Nonsense E5 1/0 2 (0.88) 0 0 1
35 c.913-7A > G IVS8-7A > G Splice I9 1/0 2 (0.88) 0 0 1
36 c.1262T > C p.I421T Missense E12 1/0 2 (0.88) 1 0 0
37 c.265C > A p.P89T Missense E3 1/0 2 (0.88) 0 1 0
38 c.800A > T p.G267L Missense E7 1/0 2 (0.88) 0 1 0
39 c.308G > A p.G103D Missense E3 0/1 1 (0.44) 0 0 1
40 c.809G > A p.R270K Missense E7 0/1 1 (0.44) 0 1 0
41 c.32T > A# p.L11*# Nonsense E1 0/1 1 (0.44) 0 0 1
42 c.346_347_delGA# p.K115 > Hfs# Frameshift E3 0/1 1 (0.44) 0 1 0
43 c.506G > A p.R169H Missense E5 0/1 1 (0.44) 1 0 0
44 c.473G > A p.R158Q Missense E5 0/1 1 (0.44) 0 0 1
45 c.574A > T p.K192* Nonsense E6 0/1 1 (0.44) 0 0 1
46 c.590T > A# p.L197*# Nonsense E6 0/1 1 (0.44) 0 1 0
47 c.694C > T p.Q232* Nonsense E6 0/1 1 (0.44) 0 1 0
48 c.754C > T p.R252W Missense E7 0/1 1 (0.44) 0 0 1
49 c.764T > C p.L255S Missense E7 0/1 1 (0.44) 0 0 1
50 c.776C > T p.A259V Missense E7 0/1 1 (0.44) 0 0 1
51 c.887A > G p.D296G Missense E8 0/1 1 (0.44) 0 0 1
52 c.1102G > A# p.E368K# Missense E11 0/1 1 (0.44) 0 1 0
53 c.1109A > G# p.E370G# Missense E11 0/1 1 (0.44) 1 0 0
54 c.1139C > T p.T380M Missense E11 0/1 1 (0.44) 1 0 0
55 c.1180G > C p.D394H Missense E11 0/1 1 (0.44) 1 0 0
56 c.1223G > A p.R408Q Missense E12 0/1 1 (0.44) 1 0 0
57 c.1304A > T# p.D435V# Missense E12 0/1 1 (0.44) 1 0 0
58 c.842C > T p.P281L Missense E7 0/1 1 (0.44) 0 0 1

#,&, mentioned in main text. PAH, phenylalanine hydroxylase; HPA, hyperphenylalaninemia.

Figure 2.

Figure 2

Hot spot mutation of PAH genes in different ethnicities Bright blue represents the Uygur population, red represents Chinese. R413P in exon 12 is the most prevalent mutation in the Uygur population, exons 7 and 12 had the highest number of mutations among the different ethnicities. PAH, phenylalanine hydroxylase.

Eight novel PAH mutations that had not been previously reported or recorded in the PAHdb or HGMD databases were identified, including two nonsense mutations (c.32T > A, p.L11* and c.590T > A, p.L197*), three missense mutations (c.1102G > A, p.E368K; c.1109A > G, p.E370G; c.1304A > T, p.D435V), one frameshift mutation (c.346-347delGA, p.K115 > Hfs), each of them was detected in one allele; two splicing mutations (c.1200-2A > C, IVS12-2A > C; c.1316-1G > A, IVS13-1G > A), each of them was detected in seven alleles (Table 2 with #), distributing in twenty patients (three patients were homozygous of IVS13-1G > A mutations, others were compound heterozygous mutations). Three missense mutations were all predicted to be pathogenic using SIFT, PolyPhen 2, and MutationTaster software. All of the IVS12-2A > C mutation was found in classical PKU and combination with IVS10-11G > A, A104D, P147L, which was mostly found in classical PKU. Two nonsense mutations (L11* and L197*) and missense mutations (E368K) were found in moderate PKU. Two missense mutations (E370G and D435V) were found in MHP.

Correlation between genotype and phenotype in Uygur HPA patients

A total of 110 Uygur patients carrying PAH mutations and one QDPR mutations constituted a spectrum of 58 different genotypic combinations (Table S1). The genotypes of PAH were divided into homozygous (n=36) and heterozygous (n=73). Variant A104D appeared in the most forms of homozygous. A total of 14 patients carried three variants, 7 of them were combination of 6 homozygous of A104, R413P, L430PC, IVS10-11G > A, IVS4+5G > T, I421T. A total of six patients carried only one variant, four of whom were in MHP and two were in mPKU.

Identification of the PAH gene mutation in patients from two families in a village

A Uygur village in Akesu has a population of about 2,000 with approximately 60 births every year. Villagers do not intermarry with other villages or other ethnic groups. The R413P mutation was identified in four patients from two families (Figure 3). The two families had no relationship but the family members were cousins, and all the patients had symptoms of PKU. As previously described, this mutation is a hot spot mutation within the Uygur population. Sixteen of 34 members of these two families carried R413P heterozygous mutations with an alarming carrier rate of approximately 1:2.1.

Figure 3.

Figure 3

Hot spot of R413P mutation in two pedigrees in an Uygur village. R413P is identified in four patients from two families. The red dots represent R413P carriers, the green dot carried R261Q, and the blue dot carried R270K. 16 members carried R413P, with an alarming carrier rate of approximately 1:2.1.

Discussion

Over the last 60 years, researches on the pathophysiology and treatment of PKU have progressed rapidly all over the world. However, similar analyses and investigation within the Uygur population have been lagging until now. Our data provide the first accurate assessment of PKU incidence within the Uygur population and highlight the genotypes and frequency of PAH mutations in this community.

The screening rates of HPA incidence fluctuated from 2011 to 2014. Such fluctuations could be affected by multiple factors, leading to variations in the incidence rates (21). In 2014, however, an unexpectedly low rate of HPA incidence was logged, likely due to a change in the screening system, from paper-based to electronic. We speculate that the reform was not so thoroughly executed at the beginning and consequently, some MHP patients were not recalled. HPA incidence rates within the Uygur population were relatively stable in 2015 and 2016, with an estimated rate of 1:5,230, which is consistent with the average rate across the entire period from 2010 to 2016. This rate is higher than that all around China (1:15,415).

Eight novel variants were identified in this study. Two variants were identified as splice variant IVS12-2A > C located in intron 12 and IVS13-1G > A located in intron 13. The bases at the junctions of the introns and exons are AG/GT. The mutation is located at the boundaries of the intron/exon and may cause abnormal RNA splicing. The remaining seven mutations were predicted to be pathogenic using mutation analysis software. The allele counts of top mutations are ten or more than ten (Table 2 with &). Herein, the hot spot mutation of the R413Pand R243Q is also common in Chinese, Japanese, and American population, and IVS10-11G > A is also a common hot spot mutation among Iranian and Turkish. However, R53H and A104D are specific in Uygur patients.

The Uygur population originated from the Dingling, Tiele and Uighur ethnic groups and were socialized by Turk in 840–1212 Anno Domini (AD) with distinct culture characteristics driven by the ancient Silk Road, an important gallery that connected culture and trade among China, Asia, and Europe. At present, approximately 11.3 million of Uygur live in oasis of Tarim Basin, in the south of Tianshan mountains in Xinjiang (22). They have their own languages, eating habits, and national costumes. Uygur population community is on the region of Silk Road, and the significant genetic admixing may occur as a consequence of ancestral migration to this region.

The exclusivity marriage in this population makes a high incidence of some hereditary diseases. In a village with 2,000 people, four patients from two families were found symptoms of PKU. The mutation site is the hot spot of R413P. The carrier rate is approximately 1:2.1. Uygur have a relatively lower rate of DHPR deficiencies, compared with that in whole China, Turkey and Iran. Only one patient of QDPR mutation was detected. However, this study may miss another form of BH4 deficiency, GTP cyclohydrolase (GTPCH-deficient) by newborn screening when the blood Phe levels were not increased (23).

This is the first study to investigate the HPA incidence rate within a large Uygur population and the incidence rate is significantly high. The data also highlight the regional differences in PAH genotypes, suggesting not only a consanguineous relationship, but also distinct differences between Asian and Caucasian populations.

Table S1. The genotype and phenotype of 111 patients in Uygur HPA patients.

Case No. Variant_1 Zygosity Variant_2 Zygosity Variant_3 Zygosity Age at diagnosis (month) Gender Blood Phe levels at diagnosis (mg/dL) Diagnosis
1a PAH c.311C > A, p.A104D Hom PAH c.158G > A, p.R53H Het 2 Male 14.6 mPKU
2 PAH c.311C > A, p.A104D Hom 2.5 Male 13.4 mPKU
3a PAH c.311C > A, p.A104D Hom PAH c.728G > A, p.R243Q Het 9 Male 13.9 mPKU
4 PAH c.311C > A, p.A104D Hom 13 Female 14 mPKU
5 PAH c.782G > A, p.R261Q Hom 2 Male 24.32 cPKU
6 PAH c.782G > A, p.R261Q Hom 3 Female 16.63 mPKU
7 PAH c.782G > A, p.R261Q Hom 2 Male 15.04 mPKU
8 PAH c.208_210delTCT, p.S70del Hom 7.5 Female 11.51 mPKU
9 PAH c.208_210delTCT, p.S70del Hom 2.5 Male 12.93 mPKU
10 PAH c.208_210delTCT, p.S70del Hom 2 Male 14 mPKU
11 PAH c.1316-1G > A, IVS13-2G > A, IVS13-2G > A Hom 3.5 Male 19.74 mPKU
12 PAH c.1316-1G > A, IVS13-2G > A, IVS13-2G > A Hom 4 Male 18.5 mPKU
13 PAH c.1316-1G > A, IVS13-2G > A, IVS13-2G > A Hom 3 Female 17.37 mPKU
14 PAH c.1238G > C, p.R413P Hom 2 Female 23.87 cPKU
15 PAH c.1238G > C, p.R413P Hom 15 Female 19.55 mPKU
16a PAH c.1238G > C, p.R413P Hom PAH c.809G > A, p.R270K Het PAH c.838G > A, p.E280K Het 2 Female 10.41 mPKU
17 PAH c.1066-11G > A, IVS10-11G > A Hom 3 Female 27.74 cPKU
18 PAH c.1066-11G > A, IVS10-11G > A Hom 2 Male 21.43 cPKU
19a PAH c.1066-11G > A, IVS10-11G > A Hom PAH c.574A > T, p.K192* Het 5 Female 30.63 cPKU
20 PAH c.1301C > A, p.A434D Hom 5 Male 11.2 mPKU
21 PAH c.1301C > A, p.A434D Hom 33 Male 14.35 mPKU
22 PAH c.913-7A > G, IVS8-7A > G Hom 4.5 Male 31.71 cPKU
23 PAH c.800A > T, p.G267L Hom 9 Female 6.94 mPKU
24 PAH c.781C > T, p.R261* Hom 3 Female 24.38 cPKU
25 PAH c.611A > G, p.EX6-96A > G Hom 2 Female 25.4 cPKU
26 PAH c.498C > G, p.Y166* Hom 1.5 Female 28.24 cPKU
27 PAH c.482T > C, p.F161S Hom 3 Male 30.9 cPKU
28a PAH c.441+5G > T, IVS4+5G > T Hom PAH c.1199+1G > C, IVS11+1G > C Het 7.5 Male 26.99 cPKU
29 PAH c.440C > T, p.P147L Hom 4.5 Male 18.92 mPKU
30 PAH c.331C > T, p.R111* Hom 6 Female 17.12 mPKU
31 PAH c.265C > A, p.P89T Hom 4 Male 9.62 mPKU
32 PAH c.158G > A, p.R53H Hom 4 Female 10.22 mPKU
33 PAH c.143T > C, p.L48S Hom 9 Male 6.28 mPKU
34a PAH c.1289T > C, p.L430P Hom PAH c.158G > A, p.R53H Het 5 Male 6.36 mPKU
35a PAH c.1262T > C, p.I421T Hom PAH c.158G > A, p.R53H Hom 4 Female 4.95 MHP
36 PAH c.1252A > C, p.T418P Hom 4 Male 7.79 mPKU
37 PAH c.1222C > T, p.R408W Hom 4 Male 32.08 cPKU
38 PAH c.1199+1G > C, IVS11+1G > C Hom 3 Female 26.46 cPKU
39 PAH c.1042C > G, p.L348V Hom 2 Female 22 cPKU
40 PAH c.1238G > C, p.R413P Het PAH c.781C > T, p.R261* Het 4 Male 26.54 cPKU
41a PAH c.1238G > C, p.R413P Het PAH c.311C > A, p.A104D Het PAH c.688G > A, p.V230I Het 5 Female 15.1 mPKU
42 PAH c.1238G > C, p.R413P Het PAH c.311C > A, p.A104D Het 5 Female 26.18 cPKU
43a PAH c.1238G > C, p.R413P Het PAH c.842+2T > A, IVS7+2T > A Het PAH c.158G > A, p.R53H Het 5 Female 16.36 mPKU
44 PAH c.1238G > C, p.R413P Het PAH c.688G > A, p.V230I Het 6 Female 3.22 MHP
45a PAH c.1238G > C, p.R413P Het PAH c.781C > T, p.R261* Het PAH c.1068C > A, p.Y356* Het 5 Female 34.34 cPKU
46 PAH c.1238G > C, p.R413P Het PAH c.1316-1G > A, IVS13-2G > A Het 2 Male 22.52 cPKU
47 PAH c.1238G > C, p.R413P Het PAH c.781C > T, p.R261* Het 5 Female 21.66 cPKU
48 PAH c.1238G > C, p.R413P Het PAH c.32T > A, p.L11* Het 3 Male 25.25 cPKU
49 PAH c.1238G > C, p.R413P Het PAH c.728G > A, p.R243Q Het 36 Male 23.12 cPKU
50 PAH c.1238G > C, p.R413P Het PAH c.838G > A, p.E280K Het 3 Male 18.63 mPKU
51b PAH c.1238G > C, p.R413P Het 4 Male 11.79 mPKU
52 PAH c.728G > A, p.R243Q Het PAH c.1316-1G > A, IVS13-2G > A Het 3 Male 29.86 cPKU
53 PAH c.728G > A, p.R243Q Het PAH c.544G > A, p.E182K Het 2 Male 15.77 mPKU
54 PAH c.728G > A, p.R243Q Het PAH c.1066-11G > A, IVS10-11G > A Het 4.5 Male 13.25 mPKU
55b PAH c.728G > A, p.R243Q Het 4.5 Male 7.24 mPKU
56 PAH c.728G > A, p.R243Q Het PAH c.1139C > T, p.T380M Het 6 Female 3.5 MHP
57 PAH c.728G > A, p.R243Q Het PAH c.1200-2A > C, IVS12-2A > C Het 2 Female 24.69 cPKU
58 PAH c.728G > A, p.R243Q Het 9.5 Male 21.95 cPKU
59 PAH c.728G > A, p.R243Q Het PAH c.887A > G, p.D296G Het 4 Female 29.07 cPKU
60 PAH c.728G > A, p.R243Q Het PAH c.1289T > C, p.L430P Het 5 Male 16.5 mPKU
61 PAH c.311C > A, p.A104D Het PAH c.688G > A, p.V230I Het 2.5 Female 11.2 mPKU
62b PAH c.311C > A, p.A104D Het 7 Male 4.16 MHP
63 PAH c.311C > A, p.A104D Het PAH c.754C > T, p.R252W Het 5 Female 21.3 cPKU
64 PAH c.311C > A, p.A104D Het PAH c.1200-2A > C, IVS12-2A > C Het 4 Male 28 cPKU
65 PAH c.311C > A, p.A104D Het PAH c.722G > A, p.R241H Het 2.5 Female 11.03 mPKU
66 PAH c.311C > A, p.A104D Het PAH c.898G > T, p.A300S Het 3 Female 6.6 mPKU
67 PAH c.311C > A, p.A104D Het PAH c.1301C > A, p.A434D Het 6 Female 6.99 mPKU
68 PAH c.311C > A, p.A104D Het PAH c.1200-2A > C, IVS12-2A > C Het 11 Male 10.5 mPKU
69 PAH c.1066-11G > A, IVS10-11G > A Het PAH c.898G > T, p.A300S Het 12 Male 7.24 mPKU
70 PAH c.1066-11G > A, IVS10-11G > A Het PAH c.1200-2A > C, IVS12-2A > C Het 8 Female 29.1 cPKU
71 PAH c.1066-11G > A, IVS10-11G > A Het PAH c.1102G > A, p.E368K Het 7 Male 9.5 mPKU
72 PAH c.1066-11G > A, IVS10-11G > A Het PAH c.1301C > A, p.A434D Het 3 Female 10.48 mPKU
73 PAH c.1066-11G > A, IVS10-11G > A Het 11 Female 19.6 mPKU
74* PAH c.158G > A, p.R53H Het PAH c.308G > A, p.G103D Het PAH c.1066-11G > A, IVS10-11G > A Het 4 Female 29.32 cPKU
75 PAH c.158G > A, p.R53H Het PAH c.590T > A, p.L197* Het 7 Male 17.16 mPKU
76 PAH c.158G > A, p.R53H Het PAH c.898G > T, p.A300S Het 1.5 Male 4.23 MHP
77 PAH c.158G > A, p.R53H Het PAH c.728G > A, p.R243Q Het 6 Male 3.7 MHP
78* PAH c.158G > A, p.R53H Het PAH c.688G > A, p.V230I Het PAH c.842+2T > A, IVS7+2T > A Het 11 Male 4.14 MHP
79 PAH c.688G > A, p.V230I Het PAH c.1223G > A, p.R408Q Het 3 Female 4.54 MHP
80 PAH c.688G > A, p.V230I Het PAH c.1252A > C, p.T418P Het 5 Male 3.19 MHP
81 PAH c.688G > A, p.V230I Het PAH c.1109A > G, p.E370G Het 6 Male 6.75 mPKU
82 PAH c.898G > T, p.A300S Het PAH c.1066-11G > A, IVS10-11G > A Het 3 Male 6.42 mPKU
83 PAH c.898G > T, p.A300S Het PAH c.1169A > G, p.E390G Het 5.5 Male 4.24 MHP
84b PAH c.898G > T, p.A300S Het 17 Male 2.96 MHP
85 PAH c.1169A > G, p.E390G Het PAH c.346_347_delGA, p.K115 > Hfs Het 12 Male 10.98 mPKU
86 PAH c.1169A > G, p.E390G Het PAH c.1197A > T, p.V399V Het 5 Male 13.87 mPKU
87* PAH c.1200-2A > C, IVS12-2A > C Het PAH c.311C > A, p.A104D Het PAH c.611A > G, p.EX6-96A > G Het 5 Female 25.34 cPKU
88 PAH c.1200-2A > C, IVS12-2A > C Het PAH c.440C > T, p.P147L Het 2 Female 21.83 cPKU
89 PAH c.1197A > T, p.V399V Het PAH c.1199+1G > C, IVS11+1G > C Het 2 Male 16.73 mPKU
90 PAH c.1197A > T, p.V399V Het PAH c.728G > A, p.R243Q Het 2 Female 37.85 cPKU
91 PAH c.1222C > T, p.R408W Het PAH c.355C > T, p.P119S Het 10 Female 14.72 mPKU
92 PAH c.1222C > T, p.R408W Het PAH c.1199+1G > C, IVS11+1G > C Het 5.5 Female 23.46 cPKU
93 PAH c.331C > T, p.R111* Het PAH c.1199+1G > C, IVS11+1G > C Het 3.5 Male 17.92 mPKU
94 PAH c.331C > T, p.R111* Het PAH c.728G > A, p.R243Q Het 3 Female 26.36 cPKU
95 PAH c.355C > T, p.P119S Het PAH c.1180G > C, p.D394H Het 6 Female 3.11 MHP
96 PAH c.355C > T, p.P119S Het PAH c.728G > A, p.R243Q Het 2 Male 4.77 MHP
97b PAH c.722G > A, p.R241H Het 6 Female 4.03 MHP
98 PAH c.722G > A, p.R241H Het PAH c.781C > T, p.R261* Het 2 Male 7.26 mPKU
99 PAH c.727C > T, p.R243* Het PAH c.1200-2A > C, IVS12-2A > C Het 7.5 Female 19.87 mPKU
100 PAH c.727C > T, p.R243* Het PAH c.842C > T, p.P281L Het 6 Male 26.55 cPKU
101 PAH c.1316-1G > A, IVS13-2G > A Het PAH c.898G > T, p.A300S Het 3 Female 7.99 mPKU
102 PAH c.482T > C, p.F161S Het PAH c.611A > G, p.EX6-96A > G Het 1.5 Female 13 mPKU
103b PAH c.506G > A, p.R169H Het 7 Female 4.61 MHP
104 PAH c.544G > A, p.E182K Het PAH c.1316-1G > A, IVS13-2G > A Het 8 Female 6.1 mPKU
105 PAH c.611A > G, p.EX6-96A > G Het PAH c.776C > T, p.A259V Het 3 Female 31.9 cPKU
106 PAH c.1068C > A, p.Y356* Het PAH c.544G > A, p.E182K Het 3 Female 7.4 mPKU
107 PAH c.473G > A, p.R158Q Het PAH c.611A > G, p.EX6-96A > G Het 2.5 Male 37.2 cPKU
108 PAH c.764T > C, p.L255S Het PAH c.1042C > G, p.L348V Het 2 Female 22.46 cPKU
109 PAH c.1301C > A, p.A434D Het PAH c.1304A > T, p.D435V Het 2 Female 4.18 MHP
110b PAH c.694C > T, p.Q232* Het 3 Male 16.6 mPKU
111 QDPR c.508G > A, p.G170S Hom 14 Female 13.41 DHPR

a, detected three variants; b, detected only one variant. HPA, hyperphenylalaninemia.

Acknowledgments

We are very grateful to the patients and their families as well as the clinicians taking care of the patients, and our genetics laboratory teams who contributed to this study.

Funding: This study was funded by the National Natural Science Foundation of China (81741102), the Natural Science Foundation of Xinjiang Province (2016 D01C116), and the Shanghai Key Laboratory of Birth Defects (13DZ2260600).

Ethical Statement: The study was approved by the Human Ethics Committee of the People’s Hospital of Xinjiang Uygur Autonomous Region (2017010) and written informed consent was obtained from all patients.

Footnotes

Conflicts of Interest: The authors have no conflicts of interest to declare.

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