Abstract
Purpose
Diffusion encoding with asymmetric gradient waveforms is appealing because the asymmetry provides superior efficiency. However, concomitant gradients may cause a residual gradient moment at the end of the waveform, which can cause significant signal error and image artifacts. The purpose of this study was to develop an asymmetric waveform designs for tensor-valued diffusion encoding that is not sensitive to concomitant gradients.
Methods
The “Maxwell index” was proposed as a scalar invariant to capture the effect of concomitant gradients. Optimization of “Maxwell-compensated” waveforms was performed in which this index was constrained. Resulting waveforms were compared to waveforms from literature, in terms of the measured and predicted impact of concomitant gradients, by numerical analysis as well as experiments in a phantom and in a healthy human brain.
Results
Maxwell-compensated waveforms with Maxwell indices below 100 (mT/m)2ms showed negligible signal bias in both numerical analysis and experiments. By contrast, several waveforms from literature showed gross signal bias under the same conditions, leading to a signal bias that was large enough to markedly affect parameter maps. Experimental results were accurately predicted by theory.
Conclusion
Constraining the Maxwell index in the optimization of asymmetric gradient waveforms yields efficient diffusion encoding that negates the effects of concomitant fields while enabling arbitrary shapes of the b-tensor. This waveform design is especially useful in combination with strong gradients, long encoding times, thick slices, simultaneous multi-slice acquisition and large FOVs.
Keywords: Tensor-valued diffusion encoding, concomitant gradients, Maxwell terms, asymmetric gradient waveforms
Introduction
Diffusion-weighted magnetic resonance imaging employs magnetic field gradients to sensitize the signal to the diffusive motion of signal-carrying spins. The gradients are assumed to be linear in space, but in practice, they are accompanied by so-called concomitant gradients, also referred to as Maxwell terms1. In spin-echo sequences, diffusion-weighting is most commonly achieved with an identical pair of pulsed field gradients on either side of the refocusing pulse. This elegant symmetry ensures that the 0th moment of the concomitant gradients caused by the first pulse is cancelled by the second pulse. Although the desired gradient waveform will be slightly perturbed by the concomitant gradients, they are too small to have a relevant impact on the b-value2 and their 0th moment will be zero. They can therefore be safely ignored.
In contrast to the symmetric case, compensation of concomitant gradients is not guaranteed for asymmetric gradient waveforms. Instead, asymmetric waveforms may cause a spatially dependent residual gradient moments at the end of the encoding. A residual moment causes a shift in k-space that may manifest as through-slice dephasing, image blurring2, T2*-relaxation3, and signal-dropout4, all of which reduce the accuracy of quantities or imaging biomarkers estimated from the data. Despite the potential problems, asymmetric waveforms are an appealing alternative to symmetric designs because of their superior efficiency. For example, asymmetry can be exploited in experiments that yield encoding periods of unequal duration (asymmetric timing) where gradients for diffusion encoding can be engaged during all of the available time, rather than inserting periods where the gradients are turned off5,6. This facilitates a categorical improvement of the encoding efficiency (encoding strength per unit time) and can be used to reduce echo-times and thus improve the signal to noise ratio (SNR). Moreover, asymmetric designs can also be used to reduce eddy-currents7, enable motion and acceleration compensation8 and facilitate pore shape estimation9,10.
Concomitant gradients are a well-known pitfall for applications that rely on strong gradients, and their effects have been described in several contexts1,2,4,11–15. Two strategies have been applied to address the effects of concomitant fields in the context of diffusion-weighted imaging. The first is to correct the error by calculating the concomitant gradients at some location in space and subtract them from the desired waveform2,4. This approach corrects the error in a single position in space, but data acquired at some distance from the selected point may still suffer from the error. The second strategy is to design waveforms that can be asymmetric but where the gradient moment from the concomitant gradients match on both sides of the refocusing pulse, or so-called waveform reshaping16. This approach has been applied for linear diffusion encoding (along a single spatial direction), however, it does not generalize to single-shot diffusion encoding along multiple directions.
We refer to single-shot diffusion encoding along multiple spatial directions as “tensor-valued” since it cannot be described by just a b-value and a direction vector, but is instead described by a b-tensor that also captures the shape of the encoding17–20. Tensor-valued encoding can probe features of the tissue microstructure that cannot be probed by conventional encoding alone21–29, e.g. microscopic anisotropy, orientation coherence and isotropic heterogeneity of tissue30. It can also inform biophysical models31–33. Waveforms that yield tensor-valued encoding have been proposed in both symmetric and asymmetric variants34–37. Recently, Sjölund et al.5 proposed a numerical optimization technique that can generate arbitrary b-tensor shapes with asymmetric waveforms that enabled a significant reduction of encoding times and improved SNR compared to previous designs.
In this work we propose a waveform design that negates effects of concomitant fields while enabling arbitrary shapes of the b-tensor. We propose the scalar Maxwell index as a cost function for minimization during waveform optimization and show that Maxwell-compensated waveforms do not suffer errors due to concomitant gradients.
Theory
Approximation of concomitant gradients
The Maxwell equations dictate that linear magnetic field gradients, such as those used for diffusion encoding, are accompanied by spatially dependent concomitant gradients11. The concomitant gradients depend on the main magnetic field (B0) and the desired (subscript D) gradient waveform
Eq. 1 |
where R is a rotation matrix that determines how the three-dimensional waveform shape (g1,2,3) is translated to the physical gradient axes (gx,y,z). To abbreviate the notation, we will only use the latter format, but we note that all subsequent expressions depend on R even if not explicitly stated. The concomitant (subscript C) gradient waveform (gC) can be approximated with an expansion in B0 at a given position (, z-axis is parallel with B0)1,11, according to
Eq. 2 |
where the concomitant gradient matrix is given by
Eq. 3 |
The actual (no subscript) gradient waveform, experienced by the spins, will not be the desired waveform, but rather the sum of the desired waveform and the concomitant waveform
Eq. 4 |
Errors due to concomitant gradients may appear when the actual gradient waveform is not balanced, meaning it has a non-negligible 0th moment at the time of the readout. This causes a shift in k-space. To capture the size of the k-space shift independent of the location we construct a concomitant moment matrix
Eq. 5 |
where γ is the gyromagnetic ratio, and τ is the duration of the diffusion encoding. The sign function h(t) = (−1)j(t) represents the spin-dephasing direction and assumes values of 1 or −1 for each encoding period , such that neighboring periods—separated by a refocusing pulse—have opposite signs. In this work we only consider spin-echo sequences, but this convention provides a straightforward generalization to experiments with an arbitrary number of refocusing pulses.
The residual 0th moment vector (k) is the integral of the actual gradient waveform at any given position, according to
Eq. 6 |
which can be simplified to the expression on the right-hand side if the desired waveform is balanced, i.e., if the desired 0th moment is zero. Figure 1 visualizes the desired and concomitant gradient waveforms at multiple positions along with the resulting residual moment vectors. At the end of the gradient waveform, the residual 0th moment (k) along an arbitrary direction (n, unit vector) is a scalar that carries information about the local shift in k-space at position r, according to
Eq. 7 |
In summary, concomitant gradients are proportional to the square of the gradient amplitude and inversely proportional to the main magnetic field strength (Eq. 3). The residual moment caused by concomitant gradients has a non-trivial dependency on rotation and spatial position.
Signal error and artifacts caused by concomitant gradients
Several spatially varying artifacts may manifest when k ≠ 0. For simplicity, we will describe the relevant effects for an ideal spin-echo sequence with rectangular slice profiles and echo-planar imaging (EPI) readout; these are slice dephasing and blurring2,13 as well as T2*-weighting3.
Slice dephasing is caused by a residual moment along the slice encoding direction (ns, unit vector normal to the slice plane), where the shift is (Eq. 7). Assuming approximately linear phase dispersion within each voxel12 and a rectangular slice profile2, the slice attenuation factor (AFS) is given by
Eq. 8 |
where T is the slice thickness. Shifting the echo within the readout plane incurs blurring, as information about high spatial frequencies is shifted outside of the readout window. For EPI, any shift in the readout plane also incurs a spatially dependent T2*-weighting, whenever the intensity-generating readout is performed at different time than at the time of the spin-echo echo3. This effect is most prominent for shifts along the phase direction due to the slower readout speed in that direction. The residual moment along the phase encoding direction (nP) is given by (Eq. 7). Assuming negligible T2*-relaxation during the relatively rapid readout of each k-space line, the attenuation factor (AFP) can be approximated by the echo-shift in relation to the readout trajectory
Eq. 9 |
where Δk = W/FOVP is the inverse distance between two acquired k-space lines, where W is the parallel imaging factor and FOVP is the field of view in the phase direction and Δt is the time between the acquisitions of two consecutive k-space lines. The total attenuation factor from both dephasing and T2*-weighting is the product
Eq. 10 |
We conclude that spatially dependent signal errors can be caused by concomitant fields and will manifest as deleterious signal attenuation (AF < 1). This attenuation depends on the waveform and the T2* of tissue as well as on imaging parameters such as slice position, angulation, in-plane acceleration, bandwidth and slice thickness.
Signal bias from diffusion-weighted images
In simulations we can calculate the relative signal bias as AF − 1 where the attenuation factor can be calculated independent of the effects of diffusion-weighting (Eq. 10). By contrast, in practical experiments the estimation of bias may be conflated with the diffusion weighting. The two effects can be separated by comparing a candidate waveform to a reference waveform that is not affected by concomitant gradients; all other variables kept equal. In a substrate that exhibits purely Gaussian diffusion, it is enough to compare the signal across identical b-values (and imaging parameters) to remove the effect of diffusion and relaxation weighting and retain only effects caused by the concomitant gradients. More generally, however, in the presence of microscopic or macroscopic diffusion anisotropy, the encoding must be matched with respect to the b-tensor. The b-tensor is calculated from the gradient waveform, according to17,19
Eq. 11 |
where the dephasing q-vector is
Eq. 12 |
and the b-value is simply b = Tr(B). Notably, this definition ignores the concomitant gradients because they have a negligible effect on the b-tensor2. With matching b-tensors for a given waveform (i) and its reference (ref), the relative signal bias can be estimated by comparing the two, according to
Eq. 13 |
where negative values of the relative signal bias reflect that signal is lost (AF < 1). Here, we do not impose the equality Si(0) = Sref(0) since this condition may be violated if the baseline signal differs across acquisitions, e.g. due to amplifier gain recalibration. We note that this estimation assumes that other effects—that also depend on the exact shape of the waveform—are negligible. Such effects include diffusion time38–40, exchange41, flow42, and eddy-currents7.
Methods
Maxwell index
We seek a gradient waveform gD for which K = 0 independent of the waveform rotation so that the signal bias is negligible. We propose to achieve this condition by minimizing the “Maxwell index” (m), herein defined as
Eq. 14 |
where
Eq. 15 |
We motivate this construct by noting that both M and K comprise the same self-squared and cross-terms found in , such that nulling the elements of M and/or K would satisfy our aim. In other words, K = 0 if for all axis combinations and waveform rotations. In the special case where the waveform is a one-dimensional trajectory (g1D), this problem has a simple solution because K = 0 when independent of rotation16. However, in the general case, K is not invariant to rotation of the gradient waveform and is therefore a poor target for optimization. Instead, we propose to base the optimization target on m which is strictly positive and invariant to rotation. This means that for a given experimental setup, a waveform with a sufficiently small m will yield negligible effects due to concomitant gradients independent of rotation, FOV-orientation, and position within the FOV. Note that the diagonal elements of MM are strictly positive so that Tr(MM) is zero if and only if the eigenvalues of M are all zero, whereas Tr(M) may be zero when M has both positive and negative eigenvalues. See the Supporting Information for a more complete evaluation of m as the target for optimization.
Optimization of Maxwell-compensated waveforms
Tensor-valued diffusion encoding can be tailored to an arbitrary configuration of the imaging sequence and hardware capabilities using the numerical optimization framework by Sjölund et al.5. To achieve Maxwell-compensated waveforms (MCW) for arbitrary b-tensor shapes we introduce the Maxwell index (Eq. 14) as an additional constraint in the optimization framework. To allow arbitrary rotation of the waveform, we used the Euclidean norm and a heat dissipation factor of 1.
In principle, waveforms can be optimized at the temporal resolution employed by the gradient amplifier system (gradient raster time). However, with the current implementation, the optimization time increases rapidly with the number of waveform samples (N). Therefore, the optimization was limited to a relatively coarse temporal resolution and linear interpolation was used to resample the waveform to the gradient raster time. Although this approach facilitates fast optimization of waveforms, linear interpolation does not perfectly preserve Maxwell-compensation. We circumvent this problem by predicting the signal bias after interpolation in a worst-case scenario and increasing the temporal resolution until the bias is negligible. For the purposes of this paper, the worst-case scenario is taken to mean that we use the actual imaging parameters of the sequence but considers the rotation of the waveform that gives the largest signal bias within a sphere with a diameter of 0.5 m (centered on the isocenter) and a T2* of 40 ms. Under these conditions, we consider a signal bias magnitude below 1 % (AF > 0.99) at the highest b-value to be negligible. Figure 2 shows that N = 100 is a sufficient temporal resolution for the waveform optimization and that the optimization should constrain the Maxwell index to be less than approximately 1000 (mT/m)2ms. To create additional headroom, we constrain all Maxwell-compensated waveforms to have m ≤ 100 (mT/m)2ms. We emphasize that these parameters can be tailored to any specific application and may therefore result in more or less conservative restrictions on the waveform design.
Experimental validation of Maxwell-compensated waveforms
To verify that Maxwell-compensated waveforms (MCW) yield negligible signal bias due to concomitant gradients we tested the waveforms by performing diffusion-weighted imaging in an oil phantom and in a healthy brain in vivo. To include a wide range of b-tensor shapes, we optimized waveforms that yield linear, planar and spherical b-tensor encoding (LTE, PTE and STE, respectively) at b-values up to b = 2.0 ms/μm2 while minimizing the encoding time (see Westin et al.17 for definitions of b-tensor shapes).
All experiments were performed on a 3 T MAGNETOM Prisma (Siemens Healthcare, Erlangen, Germany) with maximal gradient amplitude of 80 mT/m and maximal slew rate of 200 T/m/s. We used a prototype pulse sequence developed in-house43, based on a diffusion-weighted spin-echo sequence. The imaging parameters were TR = 4.5 s, FOV = 220×220×175 mm3, slices = 35, resolution = 2×2×5 mm3, iPAT = 2 (GRAPPA), echo spacing = 0.65 ms, partial-Fourier = 7/8, and b-values of 0.1, 0.7, 1.4 and 2.0 ms/μm2. This setup yielded a separation between the first and second encoding periods of approximately 8 ms during which the refocusing pulse is executed. Since the EPI-readout before the echo takes up more time than the selective excitation and navigators, the available time for diffusion encoding on either side of the refocusing pulse is asymmetric. For the current setup, δ1 =δ2 + 8 ms, where δ1 and δ2 are the durations of the encoding before and after the refocusing pulse. This timing asymmetry was used for all waveform optimization. TE was set to 102 ms, as determined by the waveform that required the longest encoding time to reach the maximal b-value. We found that all waveforms could be robustly executed on the scanner, without violating duty cycle or peripheral nerve stimulation limits, by limiting the maximal gradient amplitude to 75 mT/m and the maximal slew rate to 60 T/m/s in the optimization and execution.
The reference waveform was a pair of symmetric trapezoidal gradient waveforms on either side of the refocusing pulse, i.e. the Stejskal-Tanner design44, also known as single diffusion encoding45 that yields linear tensor encoding (SDE-LTE). For comparison, we also included numerically optimized waveforms without compensation5 (NOW) that yield linear, planar and spherical b-tensor encoding (NOW-LTE, NOW-PTE and NOW-STE). Finally, we included double diffusion encoding in an orthogonal configuration that yields planar tensor encoding (DDE-PTE). The DDE-PTE waveform required the longest encoding time to reach the maximal b-value, and therefore defined the TE that was used for all experiments. Note that all waveforms were executed in the timing for which they were optimized to retain the concomitant gradient characteristics that they exhibit at a minimal TE (Figure 3).
We predicted that none of the experiments would cause peripheral nerve stimulation above the permitted level. The prediction was performed in an in-house implementation of the SAFE model46 and considered only the diffusion encoding gradient waveform and the EPI train.
A homogeneous oil phantom (cylinder with diameter 0.12 m, and length 0.20 m) was used to detect signal loss caused by concomitant gradients. Oil was chosen because it exhibits slow Gaussian diffusion (< 0.01 μm2/ms). Thus, signal attenuation due to diffusion encoding is small (in the order of 1 %) so that substantial signal attenuation can be attributed to concomitant gradient effects2. We investigate the signal as a function of encoding strength for different waveform rotations and estimate the relative signal bias (Eq. 13) by comparing it to the reference sequence. Since the effect is expected to depend on waveform rotation we use 16 rotations of the waveform for each b-value. The same rotations were used for each b-value. We used axial slice orientation (, ) and placed the phantom so that the cylinder was approximately parallel to the main magnetic field. The FOV was placed so that the center of the outermost slices were at z-coordinates −25 and 125 mm. The FOV was shifted in this manner to measure at relatively large distances from the isocenter, because the magnitude of the concomitant fields increases with distance from the iso center.
Brain imaging was also performed in a healthy volunteer (male, age 38 y). The study was approved by the Regional Ethical Review Board (Lund, Sweden), and informed consent was obtained prior to participation. Each waveform was executed in 8, 12, 18 and 24 rotations for the four b-values, respectively. The diffusion encoding directions were generated by electrostatic repulsion on the half-sphere47,48. Each encoding direction corresponds to the symmetry axis of the b-tensors. Since spherical tensor encoding does not have a well-defined symmetry axis, we assigned g1 (Eq. 1) to be the symmetry axis. An axial slice orientation was used, and the center of the FOV was placed in the plane of the isocenter (z = 0), which coincided with the corpus callosum as seen in a mid-sagittal view. The center of the outermost slices covered z-coordinates −70 and 80 mm. The total scan time for all seven waveform designs was 36 min. Image volumes were corrected for motion and eddy currents in ElastiX49, using extrapolated references50.
To establish the size of the signal error that may occur if concomitant gradients are ignored, we investigate the impact on the diffusion-weighted signal as a function of b-value at multiple locations in the brain parenchyma. We manually defined regions of interest in the cerebellum, posterior (close to the isocenter) and anterior corpus callosum, and in the superior white matter close to the cortex. To take the diffusion anisotropy into account, we compared the signal from non-compensated and Maxwell-compensated waveforms that yield identical b-tensors (Eq. 13). We also investigate the impact of concomitant gradients on parameter maps estimated by q-space trajectory imaging (QTI)17,19. The QTI model was fitted to data acquired with SDE-LTE combined with either compensated or non-compensated variants of planar tensor encoding (MCW-PTE or DDE-PTE, respectively). We estimated parameter maps of mean diffusivity (MD), fractional anisotropy (FA)51, mean kurtosis (MK)52,53, as well as the microscopic fractional anisotropy (μFA) and mean kurtosis decomposed into the isotropic (MKI) and anisotropic (MKA) components17,22,25. The parameter bias caused by concomitant gradients in the non-compensated case was calculated as the difference in parameter values. To establish if the observed differences can be attributed to concomitant gradients, we predicted the error in the diffusion-weighted signal and QTI parameters by assuming that the signal from MCW-PTE was free from errors and multiplying it by the spatially-dependent attenuation factor estimated by Eq. 10 given the DDE-PTE waveform. Errors related to signal are presented as the signal bias (Eq. 13) and QTI parameter errors are presented as the difference.
We have modified the numerical waveform optimization5 to include Maxwell-compensation, and shared it at https://github.com/jsjol/NOW. We have also shared the SAFE peripheral nerve stimulation model at https://github.com/filip-szczepankiewicz/safe_pns_prediction, as well as tools for simulating and analyzing concomitant gradients and their effects as part of the multidimensional diffusion toolbox at https://github.com/markus-nilsson/md-dmri. These tools were implemented in Matlab (The MathWorks, Natick, MA, USA).
Simulated validation of Maxwell-compensated waveforms
To verify that Maxwell-compensated waveforms yield negligible signal bias due to concomitant gradients for a comprehensive set of rotations, we simulated the expected signal bias according to Eq. 10 and Eq. 13. The simulations used the same waveforms and imaging settings as the experiments. The worst signal bias within a sphere with a diameter of 0.2 m was calculated for three rotation modes. First, we investigated the effect of rotating the waveform assuming stationary axial slices. Second, the waveform was stationary but the FOV was rotated. Finally, both the waveform and FOV were rotated simultaneously but with independent rotation matrices. For each setup we use 104 random rotations to yield a distribution of signal biases. We used boxplots to visualize the distribution of signal biases for each waveform and rotation mode.
Impact of constraining the Maxwell index on encoding efficiency
Constraining the Maxwell index in the waveform optimization is associated with a reduced diffusion encoding efficiency compared to optimization where the effects of concomitant gradients are ignored. We investigated how the maximal b-value depends on the Maxwell index by optimizing waveforms where m was constrained to be below values in the interval 1 to 105 (mT/m)2ms. Optimization was also performed without constraining the Maxwell index. Thus, the range between extremely conservative to entirely unconstrained Maxwell indexes was investigated. The optimization settings were the same as for waveforms used in the experiments. The encoding efficiency was quantified in terms of the b-value that is achievable at a given constraint on the Maxwell index relative to the maximal b-value, b(m)/max(b).
Since the Maxwell index reflects a balance of the time-integral of the gradients squared on both sides of the refocusing pulse, we also investigated how the efficiency depends on the encoding time asymmetry. The timing asymmetry was defined as |δ1 − δ2|/(δ1 + δ2). The impact was also gauged in terms of the additional encoding time necessary to achieve the same b-value as for the non-compensated waveforms. We report the cost in terms of the additional encoding time required in absolute terms (cabs = tMCW − tNOW) and relative terms (crel = cabs/tNOW) where t is the total duration of Maxwell-compensated (tMCW) and non-compensated (tNOW) waveforms.
Results
Measurements of the diffusion-weighted signal in oil using the Maxwell-compensated waveforms appeared to be unaffected by concomitant gradients and had the same signal behavior as the reference sequence (Figure 3). At the highest b-value, the average signal bias across rotations (one standard deviation) was −0.1 (0.6), −0.2 (0.4) and −0.2 (0.5) in percent for linear, planar and spherical tensor encoding, respectively. By contrast, non-compensated waveforms yielded gross signal bias; the worst case was observed for DDE-PTE where some rotations exhibited a complete signal dropout (SB ≈ −100 %) at a distance of approximately 75 mm from the isocenter. Figure 3 also shows that the effect increases with increasing b-value, and that it introduces rotational variance even if the diffusion itself is perfectly isotropic. Overall, the phantom experiments consistently verified that the Maxwell index is an appropriate target for optimization to alleviate the effects of concomitant gradients, and that ignoring such effects may have a marked effect on the diffusion-weighted signal.
The effects of concomitant gradients were also investigated in the brain in vivo. Figure 4 shows that non-compensated waveforms suffer a rotation dependent signal error that is large enough to affect the average signal, whereas the Maxwell-compensated waveforms exhibit no evident attenuation due to concomitant gradients. As in the oil, the effect depends on the rotation of the waveform and is larger for higher b-values. Therefore, the impact on parameters that correspond to the initial slope of S(b), such as the mean diffusivity, is likely smaller compared to parameters based on signal characteristics at high b-values, such as microscopic anisotropy and kurtosis parameters.
The diffusion-weighted signal and QTI parameter maps for Maxwell-compensated and non-compensated waveforms are shown in Figure 5. The diffusion-weighted signal for DDE-PTE at b = 2 ms/μm2 is visibly affected by signal dropout, most prominent along the inferior-superior direction, whereas MCW-PTE exhibited no such behavior. We emphasize that the top row of the figure only shows the signal maps for two rotations of the waveform, and that the artifacts produced by DDE-PTE take on different appearances depending on the rotation, as seen in the oil phantom where S(b) varies wildly depending on the waveform rotation (Figure 3). As expected, the differences in MD and FA were relatively small (see Supporting Information Figure S1), but gross parameter differences were observed in the μFA, MKA (overestimated by 0.3 and 0.8, respectively) and MKI (underestimated by 0.8). The underestimation of MKI was severe enough to cause large regions in the parenchyma to exhibit negative values, which are not expected from the current experiments43. The measured and predicted differences show a remarkable similarity, indicating that the difference between signal and QTI parameters based on DDE-PTE and MCW-PTE is indeed primarily due to the prominent concomitant gradients created by DDE-PTE.
Simulations presented in Figure 6 show that the Maxwell-compensated waveforms can retain a negligible signal bias (magnitude is always below 1 %) due to concomitant gradients regardless of rotations of the waveform and/or FOV. By contrast, all non-compensated waveforms show a large variation of the bias depending on rotations.
The cost of imposing a constraint on the Maxwell index in the optimization of the waveforms is that the encoding efficiency, in terms of the achieved b-value per unit time, is reduced. Using the current premise, the efficiency was reduced by 7–23 %, depending on b-tensor shape (Figure 7). This translates to an extension of the required encoding time to reach b = 2 ms/μm2 of approximately cabs = 1–6 ms or crel = 2–8 %. Furthermore, the efficiency depends on the sequence timing asymmetry, where equal timing on both sides of the refocusing pulse yields the highest efficiency.
Discussion
It is critical to consider signal errors and artifacts caused by concomitant gradients in diffusion encoding with asymmetric waveforms. We have proposed the Maxwell index as a target for waveform optimization and demonstrated that waveforms with Maxwell indices below approximately 100–1000 (mT/m)2ms exhibit negligible effects from concomitant gradients. This result generalizes to arbitrary rotations of the gradient waveform (encoding directions) and FOVs with arbitrary size and orientation. As such, the optimization is performed only once—under appropriate conditions—and will produce a waveform with negligible bias independent of how the FOV is placed and what diffusion encoding directions are used in any given subject. Additionally, we have presented a compact matrix formulation for the approximation of concomitant gradients for an arbitrary number of refocusing pulses and expanded the signal error prediction for slice selective spin-echo experiments to include the effect of T2*-relaxation.
Investigations of concomitant gradient effects revealed that the impact of concomitant gradients is large for several asymmetric gradient waveform designs proposed in literature. Most prominently, DDE in a single spin-echo can be used to showcase the gross errors that can appear due to concomitant gradients. Figures 3 and 5 show examples of massive signal loss in both a phantom and in the human brain. Although we cannot rule out that the signal in the brain depends on effects that are not captured by the b-tensor, we expect that diffusion time dependency, exchange and flow are negligible compared to the gross signal loss predicted by theory and measured for non-compensated waveforms. Thus, it is reasonable to attribute the differences in diffusion-weighted signal and parameter maps in Figure 5 to concomitant gradients caused by the DDE-PTE waveform. As such, MCW-PTE is a viable alternative to DDE-PTE, since it is both robust to concomitant gradient effects and more efficient (shorter minimal TE for any given b-value). We stress that this issue with DDE is not present for imaging sequences where multiple refocusing pulses are used to make the diffusion encoding symmetric, such as in the double-spin-echo54.
Maxwell-compensated waveforms are compatible with existing approaches for alleviating the effects of concomitant gradients. For example, it is possible to subtract the concomitant waveform for a given position (e.g., center of the slice) from the desired waveform such that the actual waveform is closer to the desired waveform, as described by Meier et al.4. The drawback of this approach is that the correction holds only for a single point in space, whereas remaining parts of the slice still suffer some error that may be non-negligible. Another drawback is that such single-point corrections may be incompatible with techniques that excite multiple slices simultaneously55, although adaptions have been proposed56. Another approach is post-hoc correction where signal is divided by the predicted attenuation factor in Eq. 10. This approach is limited by its requirement for very detailed knowledge of the sequence design as well as the T2* of the tissue. Furthermore, if the error is so large that most of the signal is lost (Figure 3 and Figure 5) the reduction of SNR will be significant and unavoidable. Thus, we argue that Maxwell-compensated waveforms may be a preferable solution, especially for diffusion encoding at high gradient amplitudes and/or long encoding times57,58, imaging of organs in large FOVs, simultaneous multi-slice imaging59, super-resolution methods that employ thick slices and/or techniques based on rotated/oblique imaging stacks60–63.
A special case of Maxwell-compensation can be achieved for waveforms that do not require rotation. For such a premise, it is enough to ensure that K = 0 (Eq. 5). This case is usually not useful since rotations are required to probe the orientation distribution function of anisotropic systems. However, for powder-samples (randomly oriented tissue) or for spherical tensor encoding, rotation of the encoding waveform may not be necessary38–40. In such cases we may exploit the symmetries in Eq. 5 to design asymmetric waveforms that are Maxwell-compensated for a single stationary rotation. An example of this design principle was presented by Teh et al.64 where cardiac diffusion imaging was performed with a waveform that was motion and acceleration compensated at the same time as it provided efficient spherical tensor encoding with K = 0. The benefit of using stationary waveforms for spherical encoding in combination with enclosing them in the cube rather than the sphere (max-norm vs. L2-norm5) will be investigated in future studies.
The drawback of Maxwell-compensation is a penalty to the encoding efficiency which manifests as a slightly longer encoding time. However, the penalty is rather small (1–6 ms), at least for the conditions used in this paper. Notably, the penalty grows with increasing timing asymmetry (Figure 7), although we note that this is true for symmetric designs too. Asymmetric designs that ignore concomitant gradients can be virtually independent of timing asymmetry, but the signal bias is expected to grow with increasing asymmetry.
The premise of this study is limited to that of brain imaging at a 3 T clinical MRI system with b-values up to 2 ms/μm2. As such, we do not cover other relevant scenarios in detail. For example, we assume a T2* of 40 ms to simulate tissue, which may not always be a representative. Thus, specific results of this study may not be immediately translatable to other systems, sequence designs, and tissues. However, we have shared the theoretical framework, waveform optimization tools and analysis software in open source so that it can be used to develop and test waveform and experiment designs in other scenarios. The proposed methods and tools can also be used to decide if Maxwell-compensation is at all necessary, or if the premise allows for the use of non-compensated waveforms due to, for example, very small FOVs. Finally, we have shown that any waveform with m = 0 yields K = 0 in support of the Maxwell index as an optimization target (Supporting Information). However, a better target cannot be ruled out. For example, such a target could include higher order spatial terms of the concomitant gradients1 and/or encompass the effects of using asymmetric gradient coils4.
Conclusions
We proposed and demonstrated that the Maxwell index is a valid optimization target in the design of asymmetric gradient waveforms to yield negligible concomitant gradient effects. The design is applicable to arbitrary b-tensor shapes, sequence timing, and for any number of refocusing pulses larger than zero. The waveforms are Maxwell-compensated throughout the imaging volume independent of waveform rotation and FOV orientation. As such, this approach is especially relevant for diffusion imaging at high gradient strength, long encoding times, low main magnetic fields, large/oblique/off-isocenter FOVs, thick slices, and simultaneous multi-slice acquisition.
Supplementary Material
Acknowledgements
We thank Siemens Healthcare for providing source code and the pulse sequence programming environment. We thank Dr. Thomas Witzel for developing the Matlab implementation of the SAFE-model. This study was supported by the Swedish Research Council (grants no. 2016-03443, and 2016-04482), Swedish Foundation for Strategic Research (grant no. AM13-0090), Random Walk Imaging AB (grant no. MN15), and NIH (grant no. R01MH074794 and P41EB015902).
Footnotes
Supporting Information
Mathematical evaluation of the Maxwell index as an optimization target.
References
- 1.Bernstein MA, Zhou XJ, Polzin JA, et al. Concomitant gradient terms in phase contrast MR: analysis and correction. Magn Reson Med 1998;39(2):300–308. [DOI] [PubMed] [Google Scholar]
- 2.Baron CA, Lebel RM, Wilman AH, Beaulieu C. The effect of concomitant gradient fields on diffusion tensor imaging. Magn Reson Med 2012;68(4):1190–1201. [DOI] [PubMed] [Google Scholar]
- 3.Szczepankiewicz F, Nilsson M. Maxwell-compensated waveform design for asymmetric diffusion encoding. Paper presented at: Proc. Intl. Soc. Mag. Reson. Med. 26, 2018; Paris, France. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 4.Meier C, Zwanger M, Feiweier T, Porter D. Concomitant field terms for asymmetric gradient coils: consequences for diffusion, flow, and echo-planar imaging. Magn Reson Med 2008;60(1):128–134. [DOI] [PubMed] [Google Scholar]
- 5.Sjölund J, Szczepankiewicz F, Nilsson M, Topgaard D, Westin CF, Knutsson H. Constrained optimization of gradient waveforms for generalized diffusion encoding. J Magn Reson 2015;261:157–168. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6.Hutter J, Tournier JD, Price AN, et al. Time-efficient and flexible design of optimized multishell HARDI diffusion. Magn Reson Med 2018;79(3):1276–1292. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 7.Aliotta E, Moulin K, Ennis DB. Eddy current-nulled convex optimized diffusion encoding (EN-CODE) for distortion-free diffusion tensor imaging with short echo times. Magn Reson Med 2018;79(2):663–672. [DOI] [PubMed] [Google Scholar]
- 8.Hargreaves BA, Nishimura DG, Conolly SM. Time-optimal multidimensional gradient waveform design for rapid imaging. Magn Reson Med 2004;51(1):81–92. [DOI] [PubMed] [Google Scholar]
- 9.Laun FB, Kuder TA. Diffusion pore imaging with generalized temporal gradient profiles. Magn Reson Imaging. 2013;31(7):1236–1244. [DOI] [PubMed] [Google Scholar]
- 10.Demberg K, Laun FB, Bertleff M, Bachert P, Kuder TA. Experimental determination of pore shapes using phase retrieval from q-space NMR diffraction. Phys Rev E. 2018;97(5-1):052412. [DOI] [PubMed] [Google Scholar]
- 11.Norris DG, Hutchison JMS. Concomitant magnetic field gradients and their effects on imaging at low magnetic field strengths. Magn Reson Imaging. 1990;8(1):33–37. [DOI] [PubMed] [Google Scholar]
- 12.Zhou XJ, Du YP, Bernstein MA, Reynolds HG, Maier JK, Polzin JA. Concomitant magnetic-field-induced artifacts in axial echo planar imaging. Magn Reson Med 1998;39(4):596–605. [DOI] [PubMed] [Google Scholar]
- 13.Du YP, Joe Zhou X, Bernstein MA. Correction of concomitant magnetic field-induced image artifacts in nonaxial echo-planar imaging. Magn Reson Med 2002;48(3):509–515. [DOI] [PubMed] [Google Scholar]
- 14.Irfanoglu MO, Walker L, Sarlls J, Marenco S, Pierpaoli C. Effects of image distortions originating from susceptibility variations and concomitant fields on diffusion MRI tractography results. Neuroimage. 2012;61(1):275–288. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 15.Testud F, Gallichan D, Layton KJ, et al. Single-shot imaging with higher-dimensional encoding using magnetic field monitoring and concomitant field correction. Magn Reson Med 2015;73(3):1340–1357. [DOI] [PubMed] [Google Scholar]
- 16.Zhou XJ, Tan SG, Bernstein MA. Artifacts induced by concomitant magnetic field in fast spin-echo imaging. Magn Reson Med 1998;40(4):582–591. [DOI] [PubMed] [Google Scholar]
- 17.Westin CF, Knutsson H, Pasternak O, et al. Q-space trajectory imaging for multidimensional diffusion MRI of the human brain. Neuroimage. 2016;135:345–362. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 18.Topgaard D Multidimensional diffusion MRI. J Magn Reson 2017;275:98–113. [DOI] [PubMed] [Google Scholar]
- 19.Westin CF, Szczepankiewicz F, Pasternak O, et al. Measurement tensors in diffusion MRI: Generalizing the concept of diffusion encoding. Med Image Comput Comput Assist Interv 2014;17 (Pt 5):217–225. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 20.Eriksson S, Lasič S, Nilsson M, Westin CF, Topgaard D. NMR diffusion-encoding with axial symmetry and variable anisotropy: Distinguishing between prolate and oblate microscopic diffusion tensors with unknown orientation distribution. J Chem Phys 2015;142(10):104201. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 21.Mitra P Multiple wave-vector extensions of the NMR pulsed-field-gradient spin-echo diffusion measurement. Physical Review B. 1995;51(21):15074–15078. [DOI] [PubMed] [Google Scholar]
- 22.Lasič S, Szczepankiewicz F, Eriksson S, Nilsson M, Topgaard D. Microanisotropy imaging: quantification of microscopic diffusion anisotropy and orientational order parameter by diffusion MRI with magic-angle spinning of the q-vector. Frontiers in Physics. 2014;2:11. [Google Scholar]
- 23.Jespersen SN, Lundell H, Sønderby CK, Dyrby TB. Orientationally invariant metrics of apparent compartment eccentricity from double pulsed field gradient diffusion experiments. NMR Biomed 2013;26(12):1647–1662. [DOI] [PubMed] [Google Scholar]
- 24.Lawrenz M, Finsterbusch J. Detection of microscopic diffusion anisotropy on a whole-body MR system with double wave vector imaging. Magn Reson Med 2011;66(5):1405–1415. [DOI] [PubMed] [Google Scholar]
- 25.Szczepankiewicz F, Lasič S, van Westen D, et al. Quantification of microscopic diffusion anisotropy disentangles effects of orientation dispersion from microstructure: Applications in healthy volunteers and in brain tumors. Neuroimage 2015;104:241–252. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 26.Shemesh N, Ozarslan E, Adiri T, Basser PJ, Cohen Y. Noninvasive bipolar double-pulsed-field-gradient NMR reveals signatures for pore size and shape in polydisperse, randomly oriented, inhomogeneous porous media. J Chem Phys 2010;133(4):044705. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27.Özarslan E, Basser PJ. Microscopic anisotropy revealed by NMR double pulsed field gradient experiments with arbitrary timing parameters. J Chem Phys 2008;128(15):154511. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 28.Avram AV, Ozarslan E, Sarlls JE, Basser PJ. In vivo detection of microscopic anisotropy using quadruple pulsed-field gradient (qPFG) diffusion MRI on a clinical scanner. Neuroimage. 2013;64:229–239. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 29.Nilsson M, Englund E, Szczepankiewicz F, van Westen D, Sundgren PC. Imaging brain tumour microstructure. Neuroimage. 2018. [DOI] [PubMed] [Google Scholar]
- 30.Szczepankiewicz F, van Westen D, Englund E, et al. The link between diffusion MRI and tumor heterogeneity: Mapping cell eccentricity and density by diffusional variance decomposition (DIVIDE). Neuroimage. 2016;142:522–532. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 31.Lampinen B, Szczepankiewicz F, Martensson J, van Westen D, Sundgren PC, Nilsson M. Neurite density imaging versus imaging of microscopic anisotropy in diffusion MRI: A model comparison using spherical tensor encoding. Neuroimage. 2017;147:517–531. [DOI] [PubMed] [Google Scholar]
- 32.Lampinen B, Szczepankiewicz F, Novén M, et al. Searching for the neurite density with diffusion MRI: Challenges for biophysical modeling. Hum Brain Mapp 2019. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 33.Tax CMW, Szczepankiewicz F, Nilsson M, Jones DK. The dot-compartment revealed? Diffusion MRI with ultra-strong gradients and spherical tensor encoding in the living human brain. bioRxiv. 2019. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 34.Mori S, van Zijl P. Diffusion Weighting by the Trace of the Diffusion Tensor within a Single Scan. Magn Reson Med 1995;33(1):41–52. [DOI] [PubMed] [Google Scholar]
- 35.Wong EC, Cox RW, Song AW. Optimized isotropic diffusion weighting. Magn Reson Med 1995;34(2):139–143. [DOI] [PubMed] [Google Scholar]
- 36.Eriksson S, Lasič S, Topgaard D. Isotropic diffusion weighting in PGSE NMR by magic-angle spinning of the q-vector. J Magn Reson 2013;226:13–18. [DOI] [PubMed] [Google Scholar]
- 37.Cory DG, Garroway AN, Miller JB. Applications of Spin Transport as a Probe of Local Geometry. Abstr Pap Am Chem S 1990;199:105. [Google Scholar]
- 38.de Swiet TM, Mitra PP. Possible Systematic Errors in Single-Shot Measurements of the Trace of the Diffusion Tensor. J Magn Reson B 1996;111(1):15–22. [DOI] [PubMed] [Google Scholar]
- 39.Nørhøj Jespersen S, Lynge Olesen J, Ianuş A, Shemesh N. Effects of nongaussian diffusion on “isotropic diffusion“ measurements: an ex-vivo microimaging and simulation study. J Magn Reson 2019. [DOI] [PubMed] [Google Scholar]
- 40.Szczepankiewicz F, Lasic S, Nilsson C, Lundell H, Westin CF, Topgaard D. Is spherical diffusion encoding rotation invariant? An investigation of diffusion timedependence in the healthy brain. Paper presented at: Proc. Int. Soc. Magn. Reson. Med. 27, 2019. [Google Scholar]
- 41.Ning L, Setsompop K, Westin CF, Rathi Y. New Insights About Time-Varying Diffusivity and Its Estimation from Diffusion MRI. Magn Reson Med 2016. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 42.Ahlgren A, Knutsson L, Wirestam R, et al. Quantification of microcirculatory parameters by joint analysis of flow-compensated and non-flow-compensated intravoxel incoherent motion (IVIM) data. NMR Biomed 2016;29(5):640–649. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 43.Szczepankiewicz F, Sjolund J, Stahlberg F, Latt J, Nilsson M. Tensor-valued diffusion encoding for diffusional variance decomposition (DIVIDE): Technical feasibility in clinical MRI systems. PLoS ONE. 2019;14(3):e0214238. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 44.Stejskal EO, Tanner JE. Spin Diffusion Measurement: Spin echoes in the Presence of a Time-Dependent Field Gradient. the journal of chemical physics 1965;42(1):288–292. [Google Scholar]
- 45.Shemesh N, Jespersen SN, Alexander DC, et al. Conventions and nomenclature for double diffusion encoding NMR and MRI. Magn Reson Med 2016;75(1):82–87. [DOI] [PubMed] [Google Scholar]
- 46.Hebrank FX, Gebhardt M. SAFE-Model - A New Method for Predicting Peripheral Nerve Stimulations in MRI. Paper presented at: Proc. Intl. Soc. Mag. Reson. Med. 8, 2000; Denver, CO, USA. [Google Scholar]
- 47.Jones DK, Horsfield MA, Simmons A. Optimal strategies for measuring diffusion in anisotropic systems by magnetic resonance imaging. Magn Reson Med 1999;42(3):515–525. [PubMed] [Google Scholar]
- 48.Leemans A ExploreDTI: a graphical toolbox for processing, analyzing, and visualizing diffusion MR data. Paper presented at: Proc. Intl. Soc. Mag. Reson. Med. 17, 2009; Honolulu, HI, USA. [Google Scholar]
- 49.Klein S, Staring M, Murphy K, Viergever MA, Pluim JP. elastix: a toolbox for intensity-based medical image registration. IEEE Trans Med Imaging. 2010;29(1):196–205. [DOI] [PubMed] [Google Scholar]
- 50.Nilsson M, Szczepankiewicz F, van Westen D, Hansson O. Extrapolation-Based References Improve Motion and Eddy-Current Correction of High B-Value DWI Data: Application in Parkinson’s Disease Dementia. PLoS ONE. 2015;10(10):e0141825. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 51.Basser PJ, Mattiello J, Le Bihan D. MR diffusion tensor spectroscopy and imaging. Biophys J. 1994;66(1):259–267. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 52.Jensen JH, Helpern JA, Ramani A, Lu H, Kaczynski K. Diffusional kurtosis imaging: the quantification of non-gaussian water diffusion by means of magnetic resonance imaging. Magn Reson Med 2005;53(6):1432–1440. [DOI] [PubMed] [Google Scholar]
- 53.Yablonskiy DA, Bretthorst GL, Ackerman JJ. Statistical model for diffusion attenuated MR signal. Magn Reson Med 2003;50(4):664–669. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 54.Callaghan PT, Komlosh ME. Locally anisotropic motion in a macroscopically isotropic system: displacement correlations measured using double pulsed gradient spin-echo NMR. Magnetic Resonance in Chemistry. 2002;40(13):S15–S19. [Google Scholar]
- 55.Larkman DJ, Hajnal JV, Herlihy AH, Coutts GA, Young IR, Ehnholm G. Use of multicoil arrays for separation of signal from multiple slices simultaneously excited. J Magn Reson Imaging. 2001;13(2):313–317. [DOI] [PubMed] [Google Scholar]
- 56.Bhat H, Hoelscher U, Zeller M, Inventors. (Patent) Method and magnetic resonance apparatus for Maxwell compensation in simultaneous multislice data acquisitions. US 2017/0123029 A1 2017.
- 57.Jones DK, Alexander DC, Bowtell R, et al. Microstructural imaging of the human brain with a ‘super-scanner’: 10 key advantages of ultra-strong gradients for diffusion MRI. Neuroimage. 2018;182:8–38. [DOI] [PubMed] [Google Scholar]
- 58.Does MD, Parsons EC, Gore JC. Oscillating gradient measurements of water diffusion in normal and globally ischemic rat brain. Magn Reson Med 2003;49(2):206–215. [DOI] [PubMed] [Google Scholar]
- 59.Barth M, Breuer F, Koopmans PJ, Norris DG, Poser BA. Simultaneous multislice (SMS) imaging techniques. Magn Reson Med 2016;75(1):63–81. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 60.Scherrer B, Gholipour A, Warfield SK. Super-resolution reconstruction to increase the spatial resolution of diffusion weighted images from orthogonal anisotropic acquisitions. Med Image Anal 2012;16(7):1465–1476. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 61.Setsompop K, Fan Q, Stockmann J, et al. High-resolution in vivo diffusion imaging of the human brain with generalized slice dithered enhanced resolution: Simultaneous multislice (gSlider-SMS). Magn Reson Med 2017. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 62.Van Steenkiste G, Jeurissen B, Veraart J, et al. Super-resolution reconstruction of diffusion parameters from diffusion-weighted images with different slice orientations. Magn Reson Med 2016;75(1):181–195. [DOI] [PubMed] [Google Scholar]
- 63.Jeurissen B, Westin C-F, Sijbers J, Szczepankiewicz F. Improved precision and accuracy in q-space trajectory imaging by model-based superresolution reconstruction. Paper presented at: Proc. Int. Soc. Magn. Reson. Med. 27, 2019; Montreal, Canada. [Google Scholar]
- 64.Teh I, Szczepankiewicz F, Dall’Armellina E, Plein S, Nilsson M, Schneider JE. Rapid cardiac diffusion-weighted imaging with novel motion-compensated spherical tensor encoding. Paper presented at: Proc. Int. Soc. Magn. Reson. Med. 27, 2019; Montreal, Canada. [Google Scholar]
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.