SUMMARY
Calcium signalling has profound implications in the fungal infection of plants and animals, during which a series of physiological and morphological transitions are required. In this article, using a model fungal pathogen, Magnaporthe oryzae, we demonstrate that the regulation of the intracellular calcium concentration ([Ca2+]int) is essential for fungal development and pathogenesis. Imaging of [Ca2+]int showed that infection‐specific morphogenesis is highly correlated with the spatiotemporal regulation of calcium flux. Deletion of the fungal phospholipase C gene (M. oryzae phospholipase C 1, MoPLC1) suppressed calcium flux, resulting in a fungus defective in developmental steps, including appressorium formation and pathogenicity. Surprisingly, the PLC‐δ1 gene of mouse was able to functionally substitute for MoPLC1 by restoring the calcium flux, suggesting the evolutionary conservation of the phospholipase C‐mediated regulation of calcium flux. Our results reveal that MoPLC1 is a conserved modulator of calcium flux that is essential for the regulation of key steps in fungal development and pathogenesis.
INTRODUCTION
Fungal disease is a major cause of yield losses in crop plants and a rapid increase in systemic mycosis in immunocompromised individuals (Odds et al., 2001; Sexton and Howlett, 2006). Successful fungal infection and colonization of the host require the spatial and temporal regulation of the physiology and morphology of cells in response to the host environment. In the light of this, an understanding of the signal transduction pathways that enable such regulation is of particular importance in order to decode the pathogenic mechanisms and evolution of fungi (Lengeler et al., 2000). Signalling cascades operate throughout the entire infection process and do not vary greatly with the lifestyles of pathogens (Sexton and Howlett, 2006). Cyclic adenosine monophosphate (AMP)‐ and mitogen‐activated protein (MAP) kinase‐dependent signalling cascades have been considerably well studied as the determinants of morphogenic events that lead to fungal infection (Idnurm et al., 2005; Talbot, 2003). The involvement of Ca2+ signalling in fungal development has been suggested by either pharmacological approaches or imaging analysis. Studies using calcium chelators and other chemical treatments have suggested that fungi possess conserved components of the eukaryotic calcium signalling pathway, including calmodulin (Ahn et al., 2003; Hoch et al., 1987; Lee and Lee, 1998; Shaw and Hoch, 2000). Imaging analysis has revealed the presence of calcium gradients in fungal hyphae (Chandra et al., 1999; Silverman‐Gavrila and Lew, 2003). However, the genetic basis underlying the regulation of intracellular calcium concentration and its implication in fungal pathogenesis are poorly understood, despite the incredible versatility and universality of calcium signalling in eukaryotic cells (Berridge et al., 1998, 2003).
Magnaporthe oryzae (Couch and Kohn, 2002) is a filamentous fungus that causes rice blast, the most devastating disease of cultivated rice (Zeigler et al., 1994). The fungus is an important model in elucidating the pathogenic mechanisms of fungi because of its socioeconomic impact and genetic tractability (Jeon et al., 2007). Recently, the availability of both rice and fungal genome sequences (Dean et al., 2005; Goff et al., 2002; Yu et al., 2005) has provided a unique opportunity to study host–pathogen interactions at the genomic scale. As with most fungal pathogens, morphological transition plays an important role in host infection and colonization of the fungus. The infection of the host plant begins as a disseminated asexual spore, called a conidium, germinates in a water drop on a leaf surface. The germ tube apex, on recognizing the hydrophobicity of the contact surface, differentiates into a heavily melanized, dome‐shaped infection structure, the appressorium (Lee and Dean, 1993, 1994). The fungus then gains entry into the plant cells by mechanical rupturing of the cuticular barrier of the plant using turgor pressure accumulated within the melanized appressorium (Howard et al., 1991). Following penetration into plant tissues, the fungus develops bulbous invasive hyphae that are sealed in a plant membrane, and colonizes the host plant to form disease lesions over which it sporulates (Kankanala et al., 2007).
In this article, we describe the functional analysis of a fungal phosphoinositide‐specific phospholipase C (PI‐PLC) in M. oryzae (M. oryzae phospholipase C 1, MoPLC1). Imaging of the intracellular calcium concentration ([Ca2+]int) showed a clear association between induced calcium fluxes and infection‐specific morphogenesis. Deletion of MoPLC1 resulted in a fungus whose [Ca2+]int did not respond to surface hydrophobicity. Analysis of an MoPLC1 mutant indicated that MoPLC1‐mediated calcium signalling is involved in an array of developmental processes. Surprisingly, the PLC‐δ1 gene of mouse was able to functionally substitute for MoPLC1. Our findings suggest that MoPLC1 is an evolutionarily conserved modulator of calcium fluxes that regulates key steps in fungal pathogenesis.
RESULTS AND DISCUSSION
Intracellular calcium fluxes are implicated in surface sensing and infection‐related morphogenesis of M. oryzae
Our previous study using a calcium chelator, ionophore and calmodulin antagonist suggested that the calcium‐dependent signalling system is involved in appressorium formation of M. oryzae (Lee and Lee, 1998). In order to dissect the role of calcium ions in fungal pathogenesis, we monitored the relative [Ca2+]int in germinating conidia of the wild‐type strain 70‐15 by imaging cells loaded with a calcium indicator (see Experimental procedures). When conidia were allowed to germinate on a hydrophobic surface, it was observed that [Ca2+]int was elevated and localized initially at the site of germ tube emergence and at the tip of the elongating germ tube, and later within developing appressoria (Fig. 1A, top panels and bottom left panel). In contrast, germinating conidia on a hydrophilic surface, where the fungus rarely develops an appressorium, did not show localized calcium fluxes during prolonged elongation of the germ tube (Fig. 1A, bottom right panel), indicating that the calcium flux is induced by surface hydrophobicity and may therefore be involved in surface sensing. High [Ca2+]int observed within developing appressoria suggests that calcium signalling plays a role in morphogenesis as well as surface sensing. However, the germination process appears to be independent of the calcium flux.
MoPLC1 encodes a PI‐PLC‐δ isoform that regulates intracellular calcium fluxes of M. oryzae
In eukaryotic cells, the release of concentrated organellar calcium into the cytoplasm is known to be regulated by PI‐PLC, which hydrolyses a minor membrane phospholipid, phosphatidylinositol 4,5‐bisphosphate (PIP2), to produce inositol‐1,4,5‐triphosphate (IP3) and diacylglycerol (DAG) (Rhee and Bae, 1997). The addition of neomycin, an inhibitor of phospholipase C (PLC), to M. oryzae conidial suspension suppressed the calcium fluxes at the germ tube apex and appressorium formation, even on a hydrophobic surface (Fig. 1B). This lack of calcium flux and fungal morphogenesis is reminiscent of the responses observed on a hydrophilic surface. The marked reduction in appressorium formation from conidia treated with neomycin could be restored by an external supply of calcium ions (Fig. 1B). Our data suggest that appressorium formation requires calcium flux that is regulated by PLC.
The implication of PLC in the regulation of calcium flux, inferred from an analysis combining imaging technology and pharmacological study, prompted us to isolate a gene encoding a putative PI‐PLC from wild‐type strain 70‐15. Using polymerase chain reaction (PCR) amplification with degenerate primers (Jung et al., 1997), we were able to identify MoPLC1 (GenBank Accession Number AF098645) in the fungal genome. The MoPLC1 gene contains no intron and encodes a long polypeptide of 847 amino acids. The predicted amino acid sequence shows high similarity to other fungal PLCs: 64% and 50% identity to those of Botryotinia fuckeliana BPLC1 (GenBank Accession Number U65685) and Saccharomyces cerevisiae PLC1 (GenBank Accession Number D38393) (Jung et al., 1997, Yoko‐o et al., 1993), respectively. To date, only PLC‐δ‐related forms have been found in lower eukaryotes, such as yeast and slime moulds, suggesting an evolutionary relationship in which other subtypes in higher eukaryotes evolved from PLC‐δ through duplication and divergence (Koyanagi et al., 1998). Our analysis of domain architecture using deduced amino acid sequences showed that MoPLC1 is also most closely related to the mammalian PLC‐δ subtype (Fig. 2A) (Rebecchi and Pentyala, 2000). MoPLC1 contains five domains common to PLC‐δ: a pleckstrin homology (PH) domain, an EF‐hand domain, conserved catalytic domains X and Y, and a C‐2 domain. However, splice variants as found in mammalian PLC‐δ4 were not detected in our analysis of the MoPLC1 transcript (data not shown).
To test the genetic link between MoPLC1 and calcium flux, we performed targeted gene deletion by replacing MoPLC1 with a gene encoding hygromycin phosphotransferase (HPH), and examined the calcium flux in the resulting mutant. The gene replacement vector (pRHOKO3) was constructed using genomic DNA from regions flanking the MoPLC1 gene, and then transformed into the wild‐type strain (Fig. 2B). A deletion mutant (Δmoplc1) with the MoPLC1 gene replaced by HPH via homologous recombination was selected, and the correct gene replacement event in Δmoplc1 was confirmed by Southern blot analysis (Fig. S1, see Supporting Information). Imaging of [Ca2+]int clearly showed that the calcium flux observed in the wild‐type was suppressed by the deletion of MoPLC1 (Fig. 2C), indicating that MoPLC1 is the modulator of calcium flux during infection‐specific morphogenesis.
MoPLC1 is required for vegetative, asexual and sexual development
To elucidate the functions of MoPLC1‐mediated calcium signalling in M. oryzae, we searched for possible phenotypes of the mutant. The Δmoplc1 mutant showed a retarded growth rate on complete medium compared with that of the wild‐type (Table 1), although the colony morphologies of both strains were indistinguishable. A similar growth defect was reported for a deletion mutant of the PLC gene (Δcplc1) in Cryphonectria parasitica (Chung et al., 2006). It was demonstrated that the rate of hyphal extension in Neurospora crassa is dependent on calcium concentration, which, in turn, relies on the activation of stretch‐activated PLC (Silverman‐Gavrila and Lew, 2003). The growth retardation of Δmoplc1 suggests a comparable role for MoPLC1‐mediated calcium signalling in hyphal growth. In yeast, hyperosmotic shock can induce the release of internal Ca2+, suggesting that calcium signalling is involved in osmo‐sensing and regulation (Denis and Cyert, 2002). When the mutant and wild‐type strains were grown on complete medium supplemented with 0.4 m sodium chloride or 1 m glycerol, mycelia of Δmoplc1 underwent lysis under hypertonic conditions (Fig. 3A). This suggests that MoPLC1‐mediated calcium signalling is also involved in cellular processes that counteract osmotic stress in M. oryzae.
Table 1.
Strain | Growth (mm)* | Conidiation† (×104 spores/mL) | Conidial germination (%)‡ | Appressorium formation (%)§ | ||
---|---|---|---|---|---|---|
12 h | 24 h | 48 h | ||||
70‐15 | 54.7 ± 0.6 | 753 | 98.7 ± 0.6 | 92.0 ± 1.7 | 96.0 ± 1.7 | 95.0 ± 1.0 |
Δmoplc1 | 40.0 ± 3.5 | 428 | 95.0 ± 2.6 | 21.7 ± 1.6 | 38.3 ± 4.0 | 49.7 ± 4.2 |
NC‐17 | 64.7 ± 2.5 | 695 | 98.0 ± 1.7 | 94.7 ± 1.6 | 94.3 ± 2.5 | 96.3 ± 1.2 |
IC‐19 | 57.7 ± 2.1 | 497 | 97.7 ± 1.5 | 95.0 ± 2.0 | 98.3 ± 3.8 | 97.3 ± 1.2 |
Growth was measured as the diameter of fungal mycelia grown on complete medium for 12 days.
Conidiation was measured as the number of conidia in 1 mL of conidial suspension using a haemocytometer under a microscope. The conidial suspensions were prepared by flooding the 12‐day‐old fungal cultures grown on complete medium with 10 mL of sterilized distilled water.
Conidial germination was measured as the percentage of germinated conidia.
Appressorium formation was measured as the percentage of appressorium formation among germinated conidia.
Δmoplc1 produced a dramatically reduced number of conidia (asexual spores) with aberrant morphology (Table 1; Fig. 3B, top panels). A close examination of the spore ontogeny revealed that the mutant produced one narrow and elongated conidium frequently having more than three cells on one conidiophore; in contrast, the wild‐type produced pear‐shaped, three‐celled conidia borne in a sympodial pattern on a conidiophore (Fig. S2, see Supporting Information). When the mating proficiency of Δmoplc1 (MAT1‐2) mutant was tested by crossing it with the near‐isogenic wild‐type strain 70‐6 (MAT1‐1), the mutant failed to develop dark‐pigmented perithecia in the border between the two strains (Fig. 3B, bottom panels).
MoPLC1 is required for appressorium development and pathogenicity
Appressorium formation of Δmoplc1 on a hydrophobic surface showed severe defects (Fig. 4A). Conidia of Δmoplc1 frequently produced long germ tubes with branches, and only about 20% of the germinated conidia formed boot‐shaped appressoria after 12 h of incubation, whereas over 90% of the germinated conidia of the wild‐type formed dome‐shaped appressoria over a similar time frame (Table 1). The frequency of appressorium formation in Δmoplc1 gradually increased to 49% after 48 h of incubation. These results are in accordance with our calcium imaging data, suggesting that MoPLC1‐mediated calcium signalling is involved in surface sensing and appressorium morphogenesis. However, the delay, rather than incapacitation, of appressorium formation exhibited by Δmoplc1 suggests that MoPLC1‐mediated calcium signalling is necessary, but not sufficient, for complete differentiation of the appressorium. In addition, the defective appressorium formation in Δmoplc1 could be significantly restored, but not to the wild‐type level (96%), by exogenous calcium, DAG or a combination of the two (59%, 62% and 62%, respectively). This partial remediation suggests that MoPLC1 is involved in various cellular signalling processes other than regulating the intracellular levels of calcium and DAG, and that the inhibition of MoPLC1 by neomycin might be incomplete.
To determine the role of MoPLC1‐mediated calcium signalling in fungal pathogenicity, seedlings of the susceptible rice cultivar Nagdong were inoculated with a conidial suspension of the wild‐type strain 70‐15 or Δmoplc1. On this cultivar, Δmoplc1 was nearly non‐pathogenic, causing few lesions that failed to develop further, whereas the wild‐type developed numerous typical spindle‐shaped lesions that often coalesced with other lesions in close proximity (Fig. 4B, left panel). The pathogenicity defect of Δmoplc1 cannot be fully accounted for by the marked reduction in appressorium formation. To further explain the pathogenicity defect of Δmoplc1, the invasive growth and penetration of the mutant were examined. When Δmoplc1 conidia were injected into rice leaves to allow direct entry through the wound site, they failed to grow inside the host plant (Fig. 4B, right panel). In penetration assays using onion epidermal cells, most wild‐type conidia formed appressoria that penetrated the epidermis and developed ramifying bulbous invasive hyphae (Fig. 4C, top panel). However, Δmoplc1 conidia infrequently formed appressoria and failed to penetrate plant cells, and thus produced no invasive hyphae (Fig. 4C, bottom panel).
To test whether the inability of the mutant to penetrate plant cells resulted from insufficient turgor pressure within its appressoria, we performed incipient cytorrhysis assay using 1, 3 or 5 m glycerol solution (Howard et al., 1991). Intriguingly, the proportion of collapsed appressoria remained almost constant in the mutants over all glycerol concentrations applied, whereas the collapse rate of wild‐type appressoria increased as the concentration of glycerol solution increased (Fig. S3, see Supporting Information). A similar observation was made in the study of a MAP kinase kinase kinase, MCK1, which was reported to play a pivotal role in maintaining cell wall integrity in M. oryzae (Jeon et al., 2008). Our data suggest that MoPLC1 might also be involved in maintaining cell wall integrity through the regulation of the MAP kinase pathway. Taken together, we conclude that MoPLC1‐mediated calcium signalling is involved in several aspects of disease causation and fungal life cycle completion on its host.
The phenotype of Δmoplc1 is recovered by introduction of the MoPLC1 gene
To ensure that the phenotypic changes observed in Δmoplc1 were associated with the gene replacement event, we introduced a wild‐type allele of the MoPLC1 gene under the control of its native promoter (Fig. S4, see Supporting Information) into the MoPLC1 deletion mutant by co‐transformation with pII99 containing a geneticin‐resistance gene as a selectable marker. From the transformants produced, we selected the transformant, NC‐17, which contains the MoPLC1 gene in its genome (Fig. S5, see Supporting Information). Examination of NC‐17 showed that the introduction of the MoPLC1 gene into Δmoplc1 could resurrect the cytoplasmic calcium flux (Fig. 5), thereby recovering all defects in the phenotype, including pathogenicity, to the wild‐type level (Table 1; , Fig. 5). We conclude that deletion of the MoPLC1 gene is responsible for the suppression of the calcium flux that leads to diverse phenotypic changes in M. oryzae.
Mammalian PLC‐δ functionally substitutes for MoPLC1
Our analysis of the deduced amino acid sequences indicated that MoPLC1 belongs to the δ type of PLC. In addition, the predicted three‐dimensional structure of MoPLC1 shows remarkable similarity to the crystallographic structure of mouse PLC‐δ1 (Essen et al., 1996), notwithstanding the different lengths and low similarity of the two gene products (RASMOL program: http://www.umass.edu/microbio/rasmol/index2.htm). These findings led us to test whether mammalian PLC‐δ could function in place of fungal PLC. As an inter‐kingdom complementation experiment, we introduced the mouse PLC‐δ1 cDNA (Lee et al., 1999) under the control of the MoPLC1 promoter (Figs S4 and S5, see Supporting Information) into Δmoplc1. Surprisingly, imaging of cytoplasmic calcium in the representative transformant, IC‐19, showed that mouse PLC‐δ1 is able to induce calcium flux in M. oryzae (Fig. 5). This observation clearly demonstrates the functional conservation of PLC between two distinct kingdoms as a regulator of calcium signalling. Like the NC‐17 strain, the IC‐19 strain was able to grow normally, develop appressoria and cause disease lesions on rice leaves to the wild‐type level (Table 1; , Fig. 5). However, the conidiation of Δmoplc1 was not fully restored by the introduction of mouse PLC‐δ1. Although more information should be forthcoming on the biology of mammalian PLC‐δ, it is conceivable that fungal PLC has unique regulatory and biological roles pertaining to kingdom‐specific reproductive mechanisms that cannot be complemented by its mammalian counterparts.
CONCLUDING REMARKS
In this study, we have demonstrated that the PLC‐mediated regulation of calcium flux is pivotal for the fungus to cause disease on its host, and this regulation is conserved across animal and fungal kingdoms. A recent comparative genomic analysis revealed that fungi do not possess components of calcium mobilization mechanisms from internal stores, as found in plants and animals, suggesting the existence of a fungal‐specific mechanism that has yet to be identified (Zelter et al., 2004). Considering the commonalities of fungal pathogenesis in plants and animals, a comparative study of the molecular mechanisms of calcium signalling in both fungal pathogens and their hosts would provide evolutionary insights into fungal pathogenesis and also novel strategies for the control and therapeutic treatment of costly and life‐threatening fungal infections.
EXPERIMENTAL PROCEDURES
Strains and culture conditions
Magnaporthe oryzae strain 70‐15 (MAT1‐1) was provided by A. Ellingboe (University of Wisconsin, Madison, WI, USA), and used for the cloning and disruption of the MoPLC1 gene. Magnaporthe oryzae strain 70‐6, carrying the MAT1‐2 mating type allele, was used to test for sexual reproduction ability. Fungal cultures were grown on oatmeal agar medium (OMA; 50 g oatmeal per litre) at 25 °C under constant fluorescent light to promote conidia formation.
Imaging of intracellular calcium of the fungus
The relative [Ca2+]int was measured by imaging the emission intensities of the Ca2+‐sensitive fluorescent dyes calcium orange/AM (7 µm) and calcium green/AM (8 µm) (Molecular Probes, Eugene, OR, USA) for the imaging of the wild‐type and comparison of the wild‐type and mutants, respectively. Fluorescence imaging of Ca2+ in germinating conidia was performed using a Bio‐Rad MRC‐1024 confocal apparatus with a krypton–argon mixed gas laser attached to a Nikon Diaphot TMD inverted microscope (Bio‐Rad Microscience, Hemel Hempstead, Hertfordshire, UK). The dye was excited at 488 and 530 nm using 5.1% laser intensity, and emitted fluorescence was detected at 500 and 600 nm. The germinating conidia of M. oryzae were observed using a 60 × 0.75 NA objective (digital factor, 2). Increases in [Ca2+]int were expressed as a percentage of the observed to expected intensity of the total fluorescence of calcium indicator used.
Assays for appressorium formation and pathogenicity
Conidia germination and appressorium formation were assayed using GelBond film (FMC Bioproducts, Rockland, ME, USA) as an inductive surface. Conidia were harvested from 10‐day‐old cultures on OMA plates using sterile distilled water. A 40‐µL aliquot of conidial suspension (3 × 104 or 4 × 104 conidia/mL) was spotted onto the inductive surface, and incubated in a moist box at 25 °C. The conidial germination and appressorium formation rates were measured by counting at least 100 conidia under a light microscope at 12, 24 and 48 h post‐incubation. To test the effects of chemicals, 40 µL of conidial suspension was treated with 30 µm 1,2‐dioctanoyl‐sn‐glycerol, 0.1 m CaCl2·2H2O or 0.1 m neomycin sulphate.
For pathogenicity assay, conidia were harvested from 10‐day‐old oatmeal agar cultures, and 10 mL of conidial suspension (3 × 105 conidia/mL) in 250 ppm Tween‐20 was spray inoculated onto the leaves of 3‐week‐old rice seedlings (susceptible rice cv. Nakdong). Rice plants inoculated with conidia were incubated in a dew chamber at 25 °C in the dark. After 24 h, the rice plants were moved to a growth chamber with a photoperiod of 16 h light/8 h dark. Disease severity was rated 7 days after inoculation. For the infiltration infection assay, 100 µL of conidial suspension was wound inoculated into leaves of 3‐week‐old rice cv. Nakdong plants at three points per leaf. Disease severity was rated 5–7 days later.
DNA isolation and construction of the target gene replacement and complementation vectors
The MoPLC1 gene was isolated using PCR with degenerate primers designed to hybridize with the conserved domains of S. cerevisiae PLC1: SSHNTY (PLCX, 5′‐CGGAATTCAGYTCNCAYAAYACNTA‐3′), containing a terminal EcoRI site in the X domain, and GYVLKP (PLCY, 5′‐CGGGATCCGGYTTRAANACRTANCC‐3′), containing a terminal BamHI site in the Y domain. The PCR product was cloned into pUC19 (pPLCp) and used to screen a BAC library of M. oryzae 70‐15 strain. BAC clones that hybridized with pPLCp were selected. Their DNA was digested and mapped with several restriction enzymes individually and in combination. The largest two fragments that hybridized with pPLCp were subcloned into pBluescript KS+. The nucleotide sequences of eight subclones (pRHO1–8) from pRHO01 and pRHO02 were determined using a BigDye DNA sequencing kit (Applied Biosystems, Foster City, CA, USA) on an ABI 377 DNA sequencer. Sequencing PCR was performed with BigDye mixture following the manufacturer's instructions. The MoPLC1 gene replacement vector, pRHOKO3, was generated by a one‐step ligation method with a 1.8‐kb KpnI and BglII fragment of pRHO02 containing the 5′‐flanking region, a 2.2‐kb HindIII and EcoRI fragment of pRHO01 containing the 3′‐flanking region, and a 3.8‐kb BglII and HindIII Hph cassette into pBluescript containing KpnI and EcoRI ends by three‐way ligation. pRHOKO3 was linearized with NotI and transformed into 70‐15 strain. To complement the Δmoplc1 mutant, a native complementation vector, pFunc1, was constructed by cloning a 3.0‐kb KpnI and SalI fragment from pRHO02 containing the promoter region and open reading frame (ORF) and a 3.5‐kb SalI and PstI fragment from pRHO01 containing the rest of the ORF and a terminator into pBluescript with KpnI and PstI ends by one‐step ligation. pFunc1 was co‐transformed with pII99 containing a geneticin‐resistance cassette. After selection on TB3 containing geneticin, resistant transformants were identified by PCR with PLCX and PLCY and confirmed by Southern hybridization analysis. An inter‐kingdom complementation vector, pFunc2, was generated by cloning a 1.5‐kb KpnI and XhoI fragment of a PCR product amplified using the primers PMF2 (5′‐GGTACCCTAGCAAGTCCAGATTGC‐3′) and PMR1 (5′‐CTCGAGGCTTGTTTTCCGCGACAG‐3′), containing the MoPLC1 gene promoter region, into the pBP vector, which harbours the mPLCδ1 full‐length cDNA between the HindIII and EcoRI sites. pFunc2 was also co‐transformed with pII99 and positive transformants were selected on TB3 containing geneticin. Transformants for this complementation experiment were identified by PCR and Southern hybridization.
Database searches and computer analysis of the sequence
Searches for sequences showing homology at the DNA and protein levels were performed using the blast algorithm at the National Center for Biotechnology Information and European Bioinformatics Institute. For domain and secondary structure analysis, the ExPASY proteomics server (Geneva, Switzerland) was used. Domains were analysed using SMART (Simple Modular Architecture Research Tool; http://www.ebi.ac.uk/interpro) and Motif scan in protein sequence (ISREC Bioinformatics; http://hits.isb‐sib.ch/cgi‐bin/PFSCAN). Phylogenetic relationships were assessed using neighbour‐joining methods with the Lasergene programs (DNAstar, Madison, WI, USA) and PAUP* version 4.0s (R2 Swofford, 2000).
Supporting information
ACKNOWLEDGEMENTS
This research was supported by a grant from the Crop Functional Genomics Center (CG1141)of the 21st Century Frontier Research Program and funded by the Ministry of Science and Technology,by a grant from the Biogreen21 project (20080401‐034‐044‐008‐01‐00)funded by Rural Development Administration,and by the Korea Science and Engineering Foundation (KOSEF)grant funded by the Korea government (MEST) (R11‐2008‐062‐03001‐0) to YHL. HSR is grateful for the graduate fellowships by the Ministry of Education through the Brain Korea 21 Program.We are grateful to Drs Kwangwon Lee and Seogchan Kang for their valuable comments and suggestions on the manuscript.
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