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. 2019 Jul 9;5(4):e348. doi: 10.1212/NXG.0000000000000348

Genetic risk of Parkinson disease and progression:

An analysis of 13 longitudinal cohorts

Hirotaka Iwaki 1, Cornelis Blauwendraat 1, Hampton L Leonard 1, Ganqiang Liu 1, Jodi Maple-Grødem 1, Jean-Christophe Corvol 1, Lasse Pihlstrøm 1, Marlies van Nimwegen 1, Samantha J Hutten 1, Khanh-Dung H Nguyen 1, Jacqueline Rick 1, Shirley Eberly 1, Faraz Faghri 1, Peggy Auinger 1, Kirsten M Scott 1, Ruwani Wijeyekoon 1, Vivianna M Van Deerlin 1, Dena G Hernandez 1, Aaron G Day-Williams 1, Alexis Brice 1, Guido Alves 1, Alastair J Noyce 1, Ole-Bjørn Tysnes 1, Jonathan R Evans 1, David P Breen 1, Karol Estrada 1, Claire E Wegel 1, Fabrice Danjou 1, David K Simon 1, Bernard Ravina 1, Mathias Toft 1, Peter Heutink 1, Bastiaan R Bloem 1, Daniel Weintraub 1, Roger A Barker 1, Caroline H Williams-Gray 1, Bart P van de Warrenburg 1, Jacobus J Van Hilten 1, Clemens R Scherzer 1, Andrew B Singleton 1, Mike A Nalls 1,✉
PMCID: PMC6659137  PMID: 31404238

Abstract

Objective

To determine if any association between previously identified alleles that confer risk for Parkinson disease and variables measuring disease progression.

Methods

We evaluated the association between 31 risk variants and variables measuring disease progression. A total of 23,423 visits by 4,307 patients of European ancestry from 13 longitudinal cohorts in Europe, North America, and Australia were analyzed.

Results

We confirmed the importance of GBA on phenotypes. GBA variants were associated with the development of daytime sleepiness (p.N370S: hazard ratio [HR] 3.28 [1.69–6.34]) and possible REM sleep behavior (p.T408M: odds ratio 6.48 [2.04–20.60]). We also replicated previously reported associations of GBA variants with motor/cognitive declines. The other genotype-phenotype associations include an intergenic variant near LRRK2 and the faster development of motor symptom (Hoehn and Yahr scale 3.0 HR 1.33 [1.16–1.52] for the C allele of rs76904798) and an intronic variant in PMVK and the development of wearing-off effects (HR 1.66 [1.19–2.31] for the C allele of rs114138760). Age at onset was associated with TMEM175 variant p.M393T (−0.72 [−1.21 to −0.23] in years), the C allele of rs199347 (intronic region of GPNMB, 0.70 [0.27–1.14]), and G allele of rs1106180 (intronic region of CCDC62, 0.62 [0.21–1.03]).

Conclusions

This study provides evidence that alleles associated with Parkinson disease risk, in particular GBA variants, also contribute to the heterogeneity of multiple motor and nonmotor aspects. Accounting for genetic variability will be a useful factor in understanding disease course and in minimizing heterogeneity in clinical trials.

Parkinson disease is one of the most common neurodegenerative diseases, with an estimated lifetime risk as high as 1%–2%.1 Parkinson disease is traditionally characterized by motor features such as bradykinesia, rigidity, and tremor. However, in addition to these motor symptoms, patients with Parkinson disease also develop nonmotor symptoms (NMSs), which include depression, cognitive decline, sleep abnormalities, reduced olfaction, and autonomic dysfunction.2 Collectively, the combined spectrum of motor and NMSs more accurately reflects the multisystem nature of the disease. Patients with Parkinson disease may present with various combinations of symptoms and show differences in the rates of progression.3 The application of modern molecular genetic approaches over the last decade has revealed a significant number of genetic risk loci for idiopathic Parkinson disease.4–7 However, in comparison with case-control genome-wide association study (GWAS), analyzing how genetic factors influence clinical presentation and progression requires longitudinal cohorts with much more detailed observations. Such data are sparse, and individual cohorts are often small in size and quite varied, posing a challenge both in sample size and heterogeneity.

In an attempt to address these issues, we collected data from 13 distinct longitudinal Parkinson disease cohorts with detailed clinical data, including assessment of disease progression. We sought to determine whether Parkinson disease genetic risk factors, either in the form of known GWAS variants or an aggregate genetic risk score (GRS), are associated with changes in clinical progression and the disease features.

Methods

Study design and participants

A total of 13 Parkinson disease cohorts from North America, Europe, and Australia participated in the study. Nine were prospective observational cohorts and the rest were from randomized clinical trials. The observational cohorts were Drug Interaction with Genes in Parkinson's Disease (DIGPD), Harvard Biomarkers Study (HBS), Oslo Parkinson's Disease study (partly including retrospective data), The Norwegian ParkWest study (ParkWest), Parkinson's Disease Biomarker Program (PDBP), Parkinsonism: Incidence and Cognitive and Non-motor heterogeneity In CambridgeShire (PICNICS), Parkinson's Progression Markers Initiative (PPMI), Profiling Parkinson's disease study (ProPark), and the Morris K. Udall Centers for Parkinson's Research (Udall). The 4 cohorts from randomized clinical trials were Deprenyl and Tocopherol Antioxidative Therapy of Parkinsonism (DATATOP), NIH Exploratory Trials in Parkinson's Disease Large Simple Study 1, ParkFit study (ParkFit), and Parkinson Research Examination of CEP-1347 Trial with a subsequent prospective study (PreCEPT/PostCEPT). Information on these cohorts can be found in appendix e-1 (links.lww.com/NXG/A169). Subsets of participants from the cohorts who provided DNA and were nonrelated participants with PD, diagnosed at age 18 years or later, and of European ancestry were included in the study. Participants' information and genetic samples were obtained under appropriate written consent and with local institutional and ethical approvals.

Genotyping SNPs and calculation of GRS

Oslo samples were genotyped on the Illumina Infinium OmniExpress array, DIGPD samples were genotyped by Illumina Multi-Ethnic Genotyping Array, and all other samples were genotyped on the NeuroX array.8 The quality control process of variant calling included GenTrain score <0.7, minor allele frequency (MAF) >0.05 (for sample quality control but not in our analysis of rare risk factors), and Hardy-Weinberg equilibrium test statistic >10−6. Sample-specific quality control included a sample call rate of >0.95, confirmation of sex through genotyping, homozygosity quantified by F within ± 3 SD from the population mean, European ancestry confirmed by principal-components analysis with 1000 Genomes data as the reference, and genetic relatedness of any 2 individuals <0.125. Detailed information regarding NeuroX and the quality control process has been described previously.9 In the present study, we investigated 31 single nucleotide polymorphisms (SNPs) previously shown to be significantly associated with Parkinson disease.10–12 In addition, we also calculated a GRS for each participant based on these variants. The scores were transformed into Z-scores within each cohort and treated as an exposure, with effect estimates based on 1 SD change from the population mean. The list of 31 SNPs and the GRS calculation method are provided in table e-1 (links.lww.com/NXG/A170).

Furthermore, principal components (PCs) were created for each data set from genotypes using PLINK. For the PC calculation, variants were filtered for MAF (>0.05), genotype missingness (<0.05), and Hardy-Weinberg equilibrium (p ≥ 10−5). The remaining variants were pruned (using a 50-kb window, with a 5 SNP shift per window and r2 threshold of 0.5), and PCs were calculated using the pruned variants.

Measurements

The following clinical measurements and binomial outcomes were recorded longitudinally (table e-2 links.lww.com/NXG/A171): total and subscores of the Unified Parkinson's Disease Rating Scale (UPDRS) or the Movement Disorder Society revised UPDRS version (MDS-UPDRS); modified Hoehn and Yahr scales (HY); modified Schwab and England Activities of Daily Living Scale; and scores for the Mini-Mental State Examination (MMSE), The SCales for Outcomes in PArkinson's disease (SCOPA)-Cognition, and Montreal Cognitive Assessment (MoCA). Each was treated as a continuous outcome. For the UPDRS and MDS-UPDRS scores specifically, we took Z-scores of the total and subscores (except for part 4 at baseline) to compare the original and revised UPDRS versions. The conversion was applied to the scores for all subsequent visits. For UPDRS part 4, most participants had very low scores or 0 at baseline, so we normalized across all observations within each cohort. We also analyzed binomial outcomes. If we had access to the raw data, we used common cutoff values, which had been tested and reported specificity of 85% or more in patients' population. The binomial outcomes include existence of family history (1st-degree relative. 1st- and 2nd-degree relatives in HBS, PreCEPT, ProPark, and Udall), hyposmia (University of Pennsylvania Smell Identification Test < 21,13 or answering “yes” to question 2 in the NMS questionnaire), cognitive impairment (SCOPA-Cognition < 23, MMSE < 27, or MoCA < 24,14,15 or diagnosed with The Diagnostic and Statistical Manual of Mental Disorders -IV criteria for dementia), wearing off (UPDRS/MDS-UPDRS part 4 off time >0 or physician's diagnosis), dyskinesia (UPDRS/MDS-UPDRS part 4 dyskinesia time >0 or physician's diagnosis), depression (Beck Depression Inventory > 14 [PICNICS used 9 instead of 14], Hamilton Depression Rating Scale > 9, Geriatric Depression Scale [GRS] > 5,16 or physician's diagnosis), constipation (MDS-UPDRS part 1 item 11 > 0, or answering “yes” to question 5 in the NMS questionnaire), excessive daytime sleepiness (Epworth sleepiness scale > 9,17 insomnia [MDS-UPDRS part 1, item 7 > 0], rapid eye movement sleep behavior disorder [RBD]) (answered “yes” to question 1 on the Mayo Sleep Questionnaire [MSQ],18 or RBD screening questionnaire [RBDSQ >5],19 restless legs syndrome [RLS]) (answered “yes” to MSQ question 3,20 or RLS diagnosis positive by RBDSQ), and the progression to HY ≥ 3 (HY3, representing moderate to severe disease). The individual definitions of these binomial outcomes are summarized in table e-2 (links.lww.com/NXG/A171). Age, sex, years of education, age at motor symptom onset, and whether the patient was treated with levodopa or dopamine agonists at each visit were also recorded for adjustments.

Statistical analysis

Cohort-level analysis

We analyzed the association between exposures and outcomes using appropriate additive models. Covariates of interest were not available for all cohorts; therefore, the model specifications were slightly different between cohorts (detailed in table e-3, links.lww.com/NXG/A172). Briefly, the associations between an SNP/GRS and age at onset were analyzed by linear regression modeling adjusting for population stratification (PC1 and PC2). The association between family history of Parkinson disease and SNP/GRS was analyzed with a logistic regression model adjusting for PC1/2. For continuous variables, linear regression modeling adjusting for sex, education, PC1/2, age at onset, years from diagnosis, family history, and treatment status was applied. For those who had multiple observations, random intercept was added to adjust for repeated measurements of the same individual. For binomial outcomes, the logistic regression at baseline observation was applied using the same covariates as the continuous models. Those that were negative at baseline were further analyzed by a Cox regression with the same covariates but with treatment status as a time-varying covariate. Observations with missing variables were excluded from the analyses.

Meta-analysis

We applied inverse weighting (precision method) for each combination of outcome-predictor association and combined the estimates from the 13 different cohorts in a fixed effect model. Multiple test correction for SNPs was controlled with an overall false discovery rate (FDR) of 0.05 per outcome being considered significant. Similarly, multiple testing of outcomes for GRS was corrected with an FDR of 0.05, but across all traits. In addition, as a test of homogeneity, I2 indices and forest plots were used for quantitative assessment. As a sensitivity analysis, we conducted up to 13 iterations of the meta-analyses for the 12 cohorts excluding each cohort per iteration. This analysis provides information regarding heterogeneity of the cohorts and how one specific cohort exclusion affects the results. The range of estimates and maximum p values for the iterations were included. Finally, we conducted the 13-cohort meta-analysis in a random effects model with restricted maximum likelihood estimation using the same multiple testing correction.

All the above analyses were conducted with PLINK version 1.9, and R version 3.4.4 (64-bit). Statistical tests were all 2 sided.

Data availability

Qualified investigators can request raw data through the organizations' homepages (PDBP: pdbp.ninds.nih.gov/, PPMI: ppmi-info.org/) or collaboration.

Results

A total of 23,423 visits by 4,307 patients with a median follow-up period of 2.97 years (quartile range of [1.63–4.94] years) were eligible for the analysis. The baseline characteristics of the cohorts are shown in table 1. The mean ages at onset varied from 54 to 69 years; the average disease durations at cohort entry ranged from less than 1 to 10 years, and the mean observation periods were between 1.2 and 6.8 years. All DATATOP, ParkWest, PPMI, and PreCEPT participants were dopaminergic therapy naive at baseline; patients in the other cohorts were not. In the primary analysis of 13 cohorts, 17 associations were identified as significant after FDR correction (table 2, and more information in table e-4, links.lww.com/NXG/A173). Overwhelmingly, 10 were associated with GBA variants. In particular, GBA p.E365K (rs2230288) was associated with 2.37- (1.53–3.66) (95% CI) fold higher odds of having cognitive impairment at baseline (p = 1.09 × 10−4) and 2.78- (1.88–4.11) fold higher hazard ratio (HR) of developing cognitive impairment during follow-up among those who were negative for cognitive impairment at baseline (p = 2.97 × 10−7). This SNP was also associated with a higher mean on the HY at 0.10 (0.04–0.16) (p = 1.53 × 10−3), but the test of homogeneity was rejected (p = 0.017, I2 = 48.9%). In addition, it was associated with the development of an RBD among those who did not have the disorder at baseline. Other GBA mutations, p.N370S (rs767763715) and p.T408M (rs75548401), were both associated with a higher HR of reaching HY3 (4.59 [2.60–8.10] for p.N370S [p = 1.58 × 10−7] and 1.93 [1.34–2.78] for p.T408M [p = 4.40 × 10−4]). GBA p.N370N was also associated with a higher risk of developing wearing-off, dyskinesia, and daytime sleepiness. p.T408M was associated with a 6.48 (2.04–20.60) times higher odds ratio (OR) of having an RBD symptom at baseline (p = 1.53 × 10−3).

Table 1.

Summary characteristics of 13 cohorts

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Table 2.

Meta-analysis for 13 cohorts and the results of sensitivity analysis

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Two LRRK2 variants in our 31 SNPs of interest were significantly associated with outcomes. LRRK2 p.G2019S (rs34637584) was associated with higher odds of having a family history of Parkinson disease (OR 3.54 [1.72–7.29], p = 6.06 × 10−4), and the T allele of rs76904798 (intergenic at the 5′ end of LRRK2) was associated with a higher HR of reaching HY3 (HR 1.33 [1.16–1.52] for the T allele, p = 5.27 × 10−5).

Age at onset was inversely associated with the Z value of the GRS (−0.60 [−0.89 to −0.31] years per +1 SD, p = 5.33 × 10−5). Moreover, it was associated with rs34311866 (TMEM175 p.M393T), the C allele of rs199347 (intronic region of GPNMB), and the G allele of rs1106180 (intronic region of CCDC62).

The majority (14/17) of associations showed good accord across cohorts (I2 < 50%), and the forest plots (figures 1–3) also illustrate this qualitatively. Furthermore, up to 13 iterations of the leave-one-out analysis assessed 15 associations of which outcomes were measured in more than 2 cohorts and showed a small range of betas. The maximum p value of 13 iterations was less than 0.05 for all associations except for rs114138769 (intron of PMVK) and rs76763715 (GBA p.N370S) for wearing-off. A meta-analysis with a random effect model also detected 9 associations after the same FDR correction, although the model is more conservative than a fixed model.

Figure 1. Forest plots for GBA (p.N370S and p.T408M) variants and symptoms of Parkinson disease.

Figure 1

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DATATOP = Deprenyl and Tocopherol Antioxidative Therapy of Parkinsonism; DIGPD = Drug Interaction with Genes in Parkinson's Disease; HBS = Harvard Biomarkers Study; NET-PD_LS1 = NIH Exploratory Trials in Parkinson's Disease Large Simple Study 1; Oslo = Oslo PD study; ParkFit = ParkFit study; ParkWest = the Norwegian ParkWest study; PDBP = Parkinson's Disease Biomarker Program; PICNICS = Parkinsonism: Incidence and Cognitive and Non-motor heterogeneity In CambridgeShire; PPMI = Parkinson's Progression Markers Initiative; PreCEPT/PostCEPT = Parkinson Research Examination of CEP-1347 Trial with a subsequent prospective study; ProPark = Profiling Parkinson's Disease study; Udall = Morris K. Udall Centers for Parkinson's Research. * Indicates Beta in a Cox model; ** indicates Beta in a logistic model at baseline.

Figure 2. Forest plots for GBA (p.E365K) variants and symptoms of Parkinson disease.

Figure 2

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DATATOP = Deprenyl and Tocopherol Antioxidative Therapy of Parkinsonism; DIGPD = Drug Interaction with Genes in Parkinson's Disease; HBS = Harvard Biomarkers Study; NET-PD_LS1 = NIH Exploratory Trials in Parkinson's Disease Large Simple Study 1; Oslo = Oslo PD study; ParkFit = ParkFit study; ParkWest = the Norwegian ParkWest study; PDBP = Parkinson's Disease Biomarker Program; PICNICS = Parkinsonism: Incidence and Cognitive and Non-motor heterogeneity In CambridgeShire; PPMI = Parkinson's Progression Markers Initiative; PreCEPT/PostCEPT = Parkinson Research Examination of CEP-1347 Trial with a subsequent prospective study; ProPark = Profiling Parkinson's Disease study; Udall = Morris K. Udall Centers for Parkinson's Research. * Indicates Beta in a Cox model; ** indicates Beta in a logistic model at baseline; *** indicates Beta in a linear mixed model.

Figure 3. Forest plots for non-GBA risk variants/genetic risk score and symptoms or features of Parkinson disease.

Figure 3

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DATATOP = Deprenyl and Tocopherol Antioxidative Therapy of Parkinsonism; DIGPD = Drug Interaction with Genes in Parkinson's Disease; HBS = Harvard Biomarkers Study; NET-PD_LS1 = NIH Exploratory Trials in Parkinson's Disease Large Simple Study 1; Oslo = oslo PD study; ParkFit = ParkFit study; ParkWest = the Norwegian ParkWest study; PDBP = Parkinson's Disease Biomarker Program; PICNICS = Parkinsonism: Incidence and Cognitive and Non-motor heterogeneity In CambridgeShire; PPMI = Parkinson's Progression Markers Initiative; PreCEPT/PostCEPT = Parkinson Research Examination of CEP-1347 Trial with a subsequent prospective study; ProPark = Profiling Parkinson's Disease study; Udall = Morris K. Udall Centers for Parkinson's Research. * Indicates Beta in a Cox model; ** indicates Beta in a logistic model at baseline; *** indicates Beta in a linear mixed model.

Discussion

We conducted a meta-analysis with 13 longitudinal patient cohorts and identified multiple associations between genotypes and clinical phenotypic characteristics, including progression rates. Among these, GBA coding variants showed clear associations with the rate of cognitive decline (binomial outcome or UPDRS part 1 score) and motor symptom progression (HY, HY3), consistent with previous studies.12,21–25

In addition, we found associations between GBA variants and RBD and daytime sleepiness. A previous cross-sectional study with 120 Ashkenazi-Jewish patients reported a higher frequency of RBDSQ-detected RBD symptoms in GBA variant carriers.26 Our finding suggests that GBA is associated not only with baseline clinical presentation but also with disease progression.

An association between GBA and daytime sleepiness has been rarely documented. One study reported an association between sleep problems (as assessed by the Parkinson's Disease Sleep Scale) and GBA.27 However, this scale is a combined measure of daytime sleepiness and other aspects of sleep problems.

Finally, a GBA variant (p.N370S) was also associated with treatment-related complications of wearing-off and dyskinesia. Two studies have reported the association of GBA variants with these complications, with 1 positive and 1 negative result.28,29 The negative result may be due to insufficient power with only 19 patients with GBA mutations.

Overall, our study provides a distinct clinical profile of patients with GBA variants compared with those without. We note that with 63 carriers for p.N370S, 166 for p.T408M, and 217 for p.E365K, we have a reasonable power, but the number is yet not enough. And this may affect the results in seemingly different magnitudes of associations and the association for different traits per variants (e.g., motor complications with p.N370S and cognitive impairment with p.E365K). Another possible explanation is that although the effects are associated with the same gene, the biological activity or molecular mechanism could be different. Such an example has already been reported for LRRK2 p.G2019S and p.G2385R.30

Aside from GBA variants, the associations between close intergenic (5′_end) variant of LRRK2, rs76904798, and the faster development of motor symptom, and the intronic region variant of PMVK, rs114138760, and the development of wearing-off, were significant. This variant is 4.3 kb upstream from the 5′ end of LRRK2 and reported to be associated with LRRK2 gene expression changes in recent blood cis-expression quantitative trait loci (eQTL) study from the eQTLGen Consortium.31 In contrast, we did not find an association between rs34637584, LRRK2 coding mutation (p.G2019S) and motor progression. The p.G2019 variant is a rare variant (MAF 0.5% in our study), and our sample size was not adequate barring an extremely large effect size. The intronic region variant of PMVK, rs114138760, and the development of wearing-off was another finding. The biological effect of PMVK on PD has not been reported, but the variant is also located at close proximity of the GBA-SYT11 locus, so it is possible that its association was through a similar mechanism as GBA. Including the results of cross-sectional analysis, the associations of age at onset with rs34311866 (TMEM175, p.M393T), rs199347 (intron of GPNMB), and rs11060180 (intron of CCDC62) were found. TMEM175 has been reported to impair lysosomal and mitochondrial function and increase α-synuclein aggregation,32 although no functional data for this missense variant were studied. Of interest, the variant has recently been reported in another study as being associated with the age at onset.33 rs199347 is an eQTL increasing the brain expression of GPNMB,34 suggesting a causal link. Regarding rs1160180, no functional data are available in this locus.

We also evaluated the association between genetic risk variants and clinical outcomes by 2-step meta-analysis. This analysis is exploratory, and we acknowledge that this is biased toward the null due to power issues when partitioning studies randomly. However, we believe that it is helpful to assess the rigorousness of the associations we found in the primary analysis and to explore potential missed associations.

A strength of the current study was its design, incorporating multiple distinct independent Parkinson disease cohorts with longitudinal follow-ups. Although the cohorts contained patients at different disease stages, and some of the definition of outcomes were not identical, we analyzed each cohort separately and combined the results. Thus, the significant findings are consistent and applicable to the wider Parkinson disease populations. The forest plots showed that most of the estimates agree with each other despite the relative differences in the cohort characteristics. Another strength is the size of the study. The total number of genotyped and phenotyped patients with Parkinson disease (N = 4,307) is one of the largest to date for an investigation of disease progression.

The limitations of our study were as follows. First, we only included patients of European ancestry. It is uncertain whether the associations in the current study are also applicable to people from different ethnic backgrounds and further research is needed. Second, the current analysis could not distinguish causality, only basic associations. Different approaches, such as molecular-level assessment and Mendelian randomization, are crucial. Third, interaction effects between genes and other factors are another important research target not addressed in this report because of power constraints. For example, gene-by-smoking interactions for Parkinson disease were indicated recently35 and highlight the importance of correctly modeling gene-environment interactions. Finally, compared with the typical GWAS analysis (which includes tens of thousands of cases), the number of participants was small, and the outcomes of interest were not as simple or easily defined as with case-control distinctions in GWAS. Acknowledging the limitations, the list of associations provided here is valuable as a foundation for further studies and as an example that illustrates the potential of efforts to define the genetic basis of variability in presentation and course. Accounting for this variability, even in part, has the potential to positively affect etiology-based clinical trials by reducing variability between placebo and treatment groups and by providing better predictions of expected individual progression.

Acknowledgment

The authors thank all study participants and their family, investigators, and members of the following studies: Parkinson Study Group: Deprenyl and Tocopherol Antioxidative Therapy of Parkinsonism (DATATOP); Drug Interaction with Genes in Parkinson's Disease (DIGPD); Harvard Biomarkers Study (HBS); NET-PD_LS1, NIH Exploratory Trials in Parkinson's Disease Large Simple Study 1; Oslo PD study; ParkFit study; The Norwegian ParkWest study (ParkWest); Parkinson's Disease Biomarker Program (PDBP); Parkinsonism: Incidence and Cognitive and Non-motor heterogeneity In CambridgeShire (PICNICS); Parkinson's progression markers initiative (PPMI); Parkinson Study Group: Parkinson Research Examination of CEP-1347 Trial (PreCEPT) and its following study (PostCEPT); Profiling Parkinson's disease study (ProPark); and Morris K. Udall Centers for Parkinson's Research (Udall). They also thank the following grants and financial supporters of above studies; DATATOP was supported by a Public Health Service grant (NS24778) from the NINDS; by grants from the General Clinical Research Centers Program of the NIH at Columbia University (RR00645), the University of Virginia (RR00847), the University of Pennsylvania (RR00040), the University of Iowa (RR00059), Ohio State University (RR00034), Massachusetts General Hospital (RR01066), the University of Rochester (RR00044), Brown University (RR02038), Oregon Health Sciences University (RR00334), Baylor College of Medicine (RR00350), the University of California (RR00827), Johns Hopkins University (RR00035), the University of Michigan (RR00042), and Washington University (RR00036), the Parkinson's Disease Foundation at Columbia-Presbyterian Medical Center, the National Parkinson Foundation, the Parkinson Foundation of Canada, the United Parkinson Foundation, Chicago, the American Parkinson's Disease Association, New York, and the University of Rochester; DIGPD is supported by Assistance Publique Hôpitaux de Paris, funded by a grant from the French Ministry of Health (PHRC 2008, AOM08010) and a grant from the Agence Nationale pour la Sécurité des Médicaments (ANSM 2013); HBS is supported by the Harvard NeuroDiscovery Center, Michael J Fox Foundation, NINDS U01NS082157, U01NS100603, and the Massachusetts Alzheimer's Disease Research Center NIA P50AG005134; NET-PD_LS1 was supported by NINDS grants U01NS043128; OSLO is supported by the Research Council of Norway and South-Eastern Norway Regional Health Authority; ParkFit is supported by ZonMw (the Netherlands Organization for Health Research and Development [75020012]) and the Michael J Fox Foundation for Parkinson's research, VGZ (health insurance company), GlaxoSmithKline, and the National Parkinson Foundation; ParkWest is supported by the Research Council of Norway, the Western Norway Regional Health Authority, Stavanger University Hospital Research Funds, and the Norwegian Parkinson's Disease Association; PDBP is a consortium with NINDS initiative; PICNICS has received funding from the Cure Parkinson's Trust, the Van Geest Foundation and is supported by the NIH Research Cambridge Biomedical Research Centre; PPMI is supported by the Michael J Fox Foundation for Parkinson's research; PreCEPT and PostCEPT were funded by NINDS 5U01NS050095-05, Department of Defense Neurotoxin Exposure Treatment Parkinson's Research Program (Grant Number: W23RRYX7022N606), the Michael J Fox Foundation for Parkinson's Research, Parkinson's Disease Foundation, Lundbeck Pharmaceuticals. Cephalon Inc, Lundbeck Inc, John Blume Foundation, Smart Family Foundation, RJG Foundation, Kinetics Foundation, National Parkinson Foundation, Amarin Neuroscience LTD, CHDI Foundation Inc, NIH (NHGRI and NINDS), and Columbia Parkinson's Disease Research Center; ProPARK is funded by the Alkemade-Keuls Foundation, Stichting Parkinson Fonds, Parkinson Vereniging, and The Netherlands Organization for Health Research and Development; Udall is supported by the NINDS.

Glossary

ESS

Epworth Sleepiness Scale

FDR

false discovery rate

GRS

genetic risk score

GWAS

genome-wide association study

HR

hazard ratio

HY

Hoehn and Yahr scale

MAF

minor allele frequency

MDS

Movement Disorder Society

MMSE

Mini-Mental State Examination

MoCA

Montreal Cognitive Assessment

MSQ

Mayo Sleep Questionnaire

NMS

nonmotor symptom

OR

odds ratio

PC

principal component

PDSS

Parkinson's Disease Sleep Scale

PPMI

Parkinson's Progression Markers Initiative

RBD

rapid eye movement sleep behavior disorder

RBDSQ

RBD Screening Questionnaire

RLS

restless legs syndrome

SEADL

Schwab and England Activities of Daily Living Scale

UPDRS

Unified Parkinson's Disease Rating Scale

Appendix. Authors

Appendix.

Appendix.

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Study funding

This study is supported by the Intramural Research Program, the National Institute on Aging (NIA, Z01-AG000949-02), Biogen Idec, and the Michael J Fox Foundation for Parkinson's Research. The funders of the study had no role in study design, data collection, data analysis, data interpretation, or writing of the report. The authors had full access to the data in the study and had final responsibility for the decision to submit for publication.

Disclosure

H. Iwaki—grants: Michael J Fox Foundation. J. Maple-Grødem—grants: Norwegian Parkinson's Disease Association. J.-C. Corvol—advisory boards: Biogen, Air Liquide, BrainEver, Theranexus, BMS, Zambon, Pfizer, Ipsen, and AbbVie; grants: MJFF, Actelion, and Ipsen. L. Pihlstrøm—grants: Norwegian Health Association, South-East Norway Regional Health Authority, Norwegian Parkinson Research Fund, and Michael J. Fox Foundation. K.-D.H. Nguyen—stock ownership in medically related fields: Biotech/Pharmaceutical Industry. K.M. Scott—grants: Wellcome Trust PhD Fellowship. V.M. Van Deerlin—grants: NIH NS-053488. A.G. Day-Williams—stock ownership in medically related fields: Biogen and Merck. A. Brice—advisory boards: FWO and ERC; grants: JPND, ANR, Eranet Neuron, and Association France Parkinson. A.J. Noyce—honoraria: Britannia Pharmaceuticals; grants: Parkinson's UK (G-1606). J.R. Evans—advisory boards: AbbVie, Global Kinetics, and Allergan; honoraria: UCB, Allergan, and AbbVie. K. Estrada—stock ownership in medically related fields: Biogen. D.K. Simon—consultancies: Lysosomal Therapeutics, Inc.; advisory boards: Weston Brain Institute; honoraria: Parkinson Study Group, Harvard Medical School, Michael J Fox Foundation, and Biogen; grants: NIH, Weston Brain Institute, Mission Therapeutics, Inc., and BioElectron Technologies. B. Ravina—stock ownership in medically related fields: Voyager Therapeutics; consultancies: Michael J Fox Foundation. M. Toft—honoraria: Roche; grants: Research Council of Norway, South-Eastern Norway Regional Health Authority, and Michael J. Fox Foundation. B.R. Bloem—consultancies: AbbVie and Zambon; advisory boards: Michael J Fox Foundation; honoraria and speaker fees: AbbVie, Zambon, and Bial; grants: The Netherlands Organization for Scientific Research, the Michael J Fox Foundation, UCB, AbbVie, the Stichting Parkinson Fonds, the Hersenstichting Nederland, the Parkinson's Foundation, Verily Life Sciences, the Topsector Life Sciences and Health, and the Parkinson Vereniging. D. Weintraub—consultancies: Acadia, Alkahest, Anavex Life Sciences, BlackThorn Therapeutics, Bracket, Clintrex LLC, Sunovion, Theravance Biopharma, and the CHDI Foundation. R.A. Barker—consultancies: CDI and Oxford Biomedica; royalties: Springer and Wiley; grants: EU, NIHR, PUK, CPT, Rosetrees Trust, MRC, Wellcome Trust, and Evelyn Trust. C.H. Williams-Gray—grants: MRC Clinician Scientist fellowship, the NIHR Cambridge Biomedical Research Centre, the Michael J Fox Foundation, the Rosetrees Trust, the Evelyn Trust, and Addenbrookes Charitable Trust. B.P. van de Warrenburg—advisory boards: member of medical advisory boards and patient organizations; royalties: Reed Elsevier (for chapter in Dutch Neurology textbook); grants: Radboud University Medical Centre, ZonMW, Hersenstichting, and Bioblast Pharma. J.J. Van Hilten—grants: Alkemade-Keuls Foundation, Stichting Parkinson Fonds, Parkinson Vereniging, and The Netherlands Organisation for Health Research and Development. C.R. Scherzer—grants: NIH grants U01NS082157, U01NS095736, and U01NS100603. M.A. Nalls—consultancies: Lysosomal Therapies Inc., Vivid Genomics Inc., Kleiner Perkins Caufield & Byers, and Michael J. Fox Foundation. Go to Neurology.org/NG for full disclosures.

References

  • 1.Elbaz A, Bower JH, Maraganore DM, et al. . Risk tables for parkinsonism and Parkinson's disease. J Clin Epidemiol 2002;55:25–31. [DOI] [PubMed] [Google Scholar]
  • 2.Chaudhuri KR, Healy DG, Schapira AHV; National Institute for Clinical Excellence. Non-motor symptoms of Parkinson's disease: diagnosis and management. Lancet Neurol 2006;5:235–245. [DOI] [PubMed] [Google Scholar]
  • 3.Lewis SJG, Foltynie T, Blackwell AD, Robbins TW, Owen AM, Barker RA. Heterogeneity of Parkinson's disease in the early clinical stages using a data driven approach. J Neurol Neurosurg Psychiatry 2005;76:343–348. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 4.Satake W, Nakabayashi Y, Mizuta I, et al. . Genome-wide association study identifies common variants at four loci as genetic risk factors for Parkinson's disease. Nat Genet 2009;41:1303–1307. [DOI] [PubMed] [Google Scholar]
  • 5.Simón-Sánchez J, Schulte C, Bras JM, et al. . Genome-wide association study reveals genetic risk underlying Parkinson's disease. Nat Genet 2009;41:1308–1312. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 6.Chang D, Nalls MA, Hallgrímsdóttir IB, et al. . A meta-analysis of genome-wide association studies identifies 17 new Parkinson's disease risk loci. Nat Genet 2017;49:1511–1516. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 7.International Parkinson Disease Genomics Consortium, Nalls MA, Plagnol V, Hernandez DG, et al. . Imputation of sequence variants for identification of genetic risks for Parkinson's disease: a meta-analysis of genome-wide association studies. Lancet 2011;377:641–649. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 8.Nalls MA, Bras J, Hernandez DG, et al. . NeuroX, a fast and efficient genotyping platform for investigation of neurodegenerative diseases. Neurobiol Aging 2015;36:1605.e7–1605.e12. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 9.Nalls MA, Escott-Price V, Williams NM, et al. . Genetic risk and age in Parkinson's disease: continuum not stratum. Mov Disord 2015;30:850–854. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 10.Nalls MA, McLean CY, Rick J, et al. . Diagnosis of Parkinson's disease on the basis of clinical and genetic classification: a population-based modelling study. Lancet Neurol 2015;14:1002–1009. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 11.Pankratz N, Beecham GW, DeStefano AL, et al. . Meta-analysis of Parkinson's disease: identification of a novel locus, RIT2. Ann Neurol 2012;71:370–384. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 12.Davis AA, Andruska KM, Benitez BA, Racette BA, Perlmutter JS, Cruchaga C. Variants in GBA, SNCA, and MAPT influence Parkinson disease risk, age at onset, and progression. Neurobiol Aging 2016;37:209.e1–209.e7. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 13.Picillo M, Pellecchia MT, Erro R, et al. . The use of university of Pennsylvania Smell identification test in the diagnosis of Parkinson's disease in Italy. Neurol Sci 2014;35:379–383. [DOI] [PubMed] [Google Scholar]
  • 14.Hoops S, Nazem S, Siderowf AD, et al. . Validity of the MoCA and MMSE in the detection of MCI and dementia in Parkinson disease. Neurology 2009;73:1738–1745. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 15.Verbaan D, van Rooden SM, van Hilten JJ, Rijsman RM. Prevalence and clinical profile of restless legs syndrome in Parkinson's disease. Mov Disord 2010;25:2142–2147. [DOI] [PubMed] [Google Scholar]
  • 16.Goodarzi Z, Mrklas KJ, Roberts DJ, Jette N, Pringsheim T, Holroyd-Leduc J. Detecting depression in Parkinson disease: a systematic review and meta-analysis. Neurology 2016;87:426–437. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 17.Simuni T, Caspell-Garcia C, Coffey C, et al. . Correlates of excessive daytime sleepiness in de novo Parkinson's disease: a case control study. Mov Disord 2015;30:1371–1381. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 18.Boeve BF, Molano JR, Ferman TJ, et al. . Validation of the Mayo sleep questionnaire to screen for REM sleep behavior disorder in an aging and dementia cohort. Sleep Med 2011;12:445–453. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 19.Nomura T, Inoue Y, Kagimura T, Uemura Y, Nakashima K. Utility of the REM sleep behavior disorder screening questionnaire (RBDSQ) in Parkinson's disease patients. Sleep Med 2011;12:711–713. [DOI] [PubMed] [Google Scholar]
  • 20.Boeve BF, Molano JR, Ferman TJ, et al. . Validation of the Mayo sleep questionnaire to screen for REM sleep behavior disorder in a community-based sample. J Clin Sleep Med 2013;9:475–480. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 21.Davis MY, Johnson CO, Leverenz JB, et al. . Association of GBA mutations and the E326K polymorphism with motor and cognitive progression in Parkinson disease. JAMA Neurol 2016;73:1217–1224. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 22.Winder-Rhodes SE, Evans JR, Ban M, et al. . Glucocerebrosidase mutations influence the natural history of Parkinson's disease in a community-based incident cohort. Brain 2013;136:392–399. [DOI] [PubMed] [Google Scholar]
  • 23.Brockmann K, Srulijes K, Pflederer S, et al. . GBA-associated Parkinson's disease: reduced survival and more rapid progression in a prospective longitudinal study. Mov Disord 2015;30:407–411. [DOI] [PubMed] [Google Scholar]
  • 24.Liu G, Boot B, Locascio JJ, et al. . Specifically neuropathic Gaucher's mutations accelerate cognitive decline in Parkinson's. Ann Neurol 2016;80:674–685. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 25.Liu G, Locascio JJ, Corvol JC, et al. . Prediction of cognition in Parkinson's disease with a clinical-genetic score: a longitudinal analysis of nine cohorts. Lancet Neurol 2017;16:620–629. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 26.Gan-Or Z, Mirelman A, Postuma RB, et al. . GBA mutations are associated with rapid eye movement sleep behavior disorder. Ann Clin Transl Neurol 2015;2:941–945. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 27.Brockmann K, Srulijes K, Hauser AK, et al. . GBA-associated PD presents with nonmotor characteristics. Neurology 2011;77:276–280. [DOI] [PubMed] [Google Scholar]
  • 28.Oeda T, Umemura A, Mori Y, et al. . Impact of glucocerebrosidase mutations on motor and nonmotor complications in Parkinson's disease. Neurobiol Aging 2015;36:3306–3313. [DOI] [PubMed] [Google Scholar]
  • 29.Jesús S, Huertas I, Bernal-Bernal I, et al. . GBA variants influence motor and non-motor features of Parkinson's disease. PLoS One 2016;11:e0167749. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 30.Marras C, Alcalay RN, Caspell-Garcia C, et al. . Motor and nonmotor heterogeneity of LRRK2-related and idiopathic Parkinson's disease. Mov Disord 2016;31:1192–1202. [DOI] [PubMed] [Google Scholar]
  • 31.Võsa U, Claringbould P, Westra HJ, et al. . Unraveling the polygenic architecture of complex traits using blood eQTL meta-analysis. bioRxiv Epub 2018 Oct 19.
  • 32.Jinn S, Drolet RE, Cramer PE, et al. . TMEM175 deficiency impairs lysosomal and mitochondrial function and increases α-synuclein aggregation. Proc Natl Acad Sci U S A 2017;114:2389–2394. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 33.Blauwendraat C, Heilbron K, Vallerga CL, Bandres-Ciga S, Coelln Rvon, Pihlstrøm L. Parkinson disease age at onset GWAS: defining heritability, genetic loci and α-synuclein mechanisms. Mov Disord Epub 2019 Apr 7. [DOI] [PMC free article] [PubMed]
  • 34.UKBEC; Murthy MN, Blauwendraat C, Guelfi S, et al. . Increased brain expression of GPNMB is associated with genome wide significant risk for Parkinson's disease on chromosome 7p15.3. Neurogenetics 2017;18:121–133. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 35.Lee PC, Ahmed I, Loriot MA, et al. . Smoking and Parkinson disease: evidence for gene-by-smoking interactions. Neurology 2018;90:e583–e592. [DOI] [PMC free article] [PubMed] [Google Scholar]

Associated Data

This section collects any data citations, data availability statements, or supplementary materials included in this article.

Data Availability Statement

Qualified investigators can request raw data through the organizations' homepages (PDBP: pdbp.ninds.nih.gov/, PPMI: ppmi-info.org/) or collaboration.

Articles from Neurology: Genetics are provided here courtesy of American Academy of Neurology

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