Bacterial and Virus Strains |
E. coli Rosetta2(DE3)-pLysS |
Millipore Sigma |
70956 |
Biological Samples |
Bovine retina |
W.L. Lawson |
Custom order |
Experimental Models |
E. coli Rosetta2(DE3)-pLysS |
Millipore Sigma |
70956 |
Chemicals, Peptides, and Recombinant Proteins |
BS3 |
Thermo Scientific |
A39266 |
DSSeb |
Proteochem |
c1136 |
Sequencing-grade modified trypsin |
Thermo Scientific |
PI90305 |
Deposited Data |
Cryo-EM map of intact BBSome |
This paper |
EMD-7839 |
Cryo-EM map of BBSome missing BBS5 |
This paper |
EMD-7841 |
Cα model of BBSome |
This paper |
PDBDEV_00000018 |
Coordinates of the BBS1βprop–ARL6GTP complex |
(Mourão et al., 2014) |
PDB: 4V0M |
Recombinant DNA |
pGEX6P-ARL6ΔN16[Q73L] |
(Jin et al., 2010) |
N/A |
Software and Algorithms |
UCSFImage4 |
(Li et al., 2015) |
https://cryoem.ucsf.edu/software/UCSFImage.html |
MotionCor2 |
(Zheng et al., 2017) |
https://msg.ucsf.edu/software |
CTFFIND4 |
(Rohou and Grigorieff, 2015) |
http://grigoriefflab.janelia.org/ctffind4 |
Relion 1.3 |
(Scheres, 2015) |
https://www3.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page |
SPARX |
(Hohn et al., 2007) |
http://sparx-em.org/sparxwiki/SparxWiki |
UCSF Chimera |
(Pettersen et al., 2004) |
https://www.cgl.ucsf.edu/chimera/ |
genesilico |
(Kurowski and Bujnicki, 2003) |
https://www.genesilico.pl/meta2/ |
pLink |
(Fan et al., 2015; Yang et al., 2012) |
http://pfind.ict.ac.cn/software/pLink/index.html |
hhpred |
(Söding, 2005) |
https://toolkit.tuebingen.mpg.de/#/hhpred |
RosettaCM |
(Song et al., 2013) |
https://www.rosettacommons.org/software |
Rosetta ab initio
|
(Bradley et al., 2005) |
https://www.rosettacommons.org/software |
RosettaES |
(Frenz et al., 2017) |
https://www.rosettacommons.org/software |
Other |
Quantifoil R1.2/1.3 holey carbon film on copper 200 mesh grids |
Electron Microscopy Sciences |
Cat #Q250CR-06 |