In the crystalline state, salicylaldehyde N(4)-morpholinothiosemicarbazone forms sheets parallel to (002) and consisting of two parallel chains running in the a-axis direction and formed by N—H⋯O and C—H⋯O hydrogen bonds.
Keywords: crystal structure, thiosemicarbazone, hydrogen bonding, Hirshfeld analysis
Abstract
The structure of the title compound (systematic name: N-{[(2-hydroxyphenyl)methylidene]amino}morpholine-4-carbothioamide), C12H15N3O2S, was previously determined (Koo et al., 1977 ▸) using multiple-film equi-inclination Weissenberg data, but has been redetermined with higher precision to explore its conformation and the hydrogen-bonding patterns and supramolecular interactions. The molecular structure shows intramolecular O—H⋯N and C—H⋯S interactions. The configuration of the C=N bond is E. The molecule is slightly twisted about the central N—N bond. The best planes through the phenyl ring and the morpholino ring make an angle of 43.44 (17)°. In the crystal, the molecules are connected into chains by N—H⋯O and C—H⋯O hydrogen bonds, which combine to generate sheets lying parallel to (002). The most prominent contribution to the surface contacts are H⋯H contacts (51.6%), as concluded from a Hirshfeld surface analysis.
Chemical context
For many years, scientific studies on cancer have attracted a lot of attention, especially in the field of antitumor drugs. Cisplatin is well known as an effective therapy to prohibit the proliferation of tumor cells (Berners-Price, 2011 ▸). However, this drug has some unforeseen side effects with detrimental effects on the patient’s health (Lévi et al., 2000 ▸; Go & Adjei, 1999 ▸; Harbour et al., 1996 ▸). In a search for antitumour drugs with fewer harmful side effects, thiosemicarbazides were examined since this organic class of thiourea derivatives was known to possess a diversity of biological activities such as antitumoral, antibacterial, and antifungal activities owing to presence of the N—N—C=S system (Dilović et al., 2008 ▸; Liberta & West, 1992 ▸). Many mechanisms have been advanced to probe the role of this conjugated system. In general, thiosemicarbazones can bind to nucleotides of tumour cells by the nitrogen and sulfur atoms, which prevents the distorted DNA from translation and encryption for their growth (Dilović et al., 2008 ▸).
Thiosemicarbazones are synthesized by the condensation between an aldehyde or ketone and an N(4)-substituted thiosemicarbazide. Many reports have demonstrated that N(4)-aromatic or heterocyclic substituted thiosemicarbazides are biologically more active than thiosemicarbazones without substituted groups (Dilović et al., 2008 ▸; Chen et al., 2004 ▸; Shi et al., 2009 ▸). In addition, salicylaldehyde is a key compound in the synthesis of a variety of potential therapeutic products (Bindu et al., 1998 ▸).
The crystal and molecular structure of salicylaldehyde N(4)-morpholinothiosemicarbazone was published previously (Koo et al., 1977 ▸) based on multiple-film equi-inclination Weissenberg data using Cu Kα radiation and refined to an R value of 0.11. In this study, we present the synthesis of salicylaldehyde N(4)-morpholinothiosemicarbazone (3) together with its structural characteristics and crystal structure redetermination using present-day technology.
Structural commentary
The title compound crystallizes in the orthorhombic space group Pna21 with one molecule in the asymmetric unit (Fig. 1 ▸). The N9—N10 and C11=N10 bond lengths are 1.371 (3) and 1.275 (3) Å, respectively (compared to 1.40 and 1.30 Å in the previous structure determination; Koo et al., 1977 ▸). The configuration of the C11=N10 bond is E [the N9—N10—C11—C12 torsion angle is −179.9 (3)°], which gives rise to an intramolecular O18—H18⋯N10 hydrogen bond with an
(6) graph-set motif (Table 1 ▸). The planes of the phenyl ring (r.m.s. deviation = 0.0020 Å) and the thiosemicarbazone function (N1/C7–C11; r.m.s. deviation = 0.0911 Å) make an angle of 16.26 (5)°. The molecule is slightly twisted about the N9—N10 bond [torsion angle C7—N9—N10—C11 is 162.4 (3)°; +ap conformation].
Figure 1.
A view of the molecular structure of (3), with atom labels and displacement ellipsoids drawn at the 50% probability level. H atoms are shown as small circles of arbitrary radii and the intramolecular O—H⋯N and C—H⋯S interactions, respectively, by blue and grey dashed lines.
Table 1. Hydrogen-bond geometry (Å, °).
| D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A |
|---|---|---|---|---|
| N9—H9⋯O4i | 0.86 (3) | 2.33 (3) | 3.141 (3) | 157 (3) |
| O18—H18⋯N10 | 0.80 (4) | 1.91 (5) | 2.597 (3) | 145 (4) |
| C6—H6A⋯S8 | 0.97 | 2.62 | 3.121 (3) | 112 |
| C15—H15⋯O18ii | 0.93 | 2.48 | 3.404 (4) | 176 |
Symmetry codes: (i)
; (ii)
.
The morpholino ring adopts a chair conformation [puckering parameters Q = 0.554 (3) Å, θ = 173.2 (3)° and φ = 214 (3)°] with the thiosemicarbazone function in an equatorial position. The plane of the phenyl ring forms a dihedral angle of 43.44 (17)° with the best plane through the morpholino ring. A second intramolecular C6—H6A⋯S8 interaction is observed (Table 1 ▸).
Supramolecular features
The crystal packing of (3) is dominated by N9—H9⋯O4 hydrogen bonds (Table 1 ▸), resulting in the formation of chains of molecules with graph-set motif
(7) propagating along the a-axis direction (Fig. 2 ▸). Furthermore, a second parallel chain of molecules with graph-set motif
(5) running along the a-axis direction is formed by C15—H15⋯O18 interactions (Fig. 3 ▸). These two chain motifs combine to generate a sheet lying parallel to (002). No voids or π–π stackings are observed in the crystal packing of (3).
Figure 2.
Partial crystal packing of (3), showing the N—H⋯O interactions (red dashed lines) resulting in chain formation in the a-axis direction [see Table 1 ▸; symmetry code: (i) x +
, −y +
, z].
Figure 3.
Partial crystal packing of (3), showing the C—H⋯O interactions (red dashed lines) resulting in chain formation in the a-direction [see Table 1 ▸; symmetry code: (ii) x +
, −y +
, z].
A Hirshfeld surface analysis (Spackman & Jayatilaka, 2009 ▸) and the associated two-dimensional fingerprint plots (McKinnon et al., 2007 ▸) were performed in order to further investigate the supramolecular network. The Hirshfeld surface calculated using CrystalExplorer (Turner et al., 2017 ▸) and mapped over d norm is given in Fig. 4 ▸. The bright-red spots near atoms O4 and N9 in Fig. 4 ▸ a refer to the N9—H9⋯O4 hydrogen bond, and near atoms C15 and O18 in Fig. 4 ▸ b to the C15—H15⋯O18 hydrogen bond. The faint-red spots near atoms C5 and S8 illustrate a short contact in the crystal packing of (3) (H5B⋯S8 = 2.913 Å). The fingerprint plots (Fig. 5 ▸) further indicate a major contribution by H⋯H contacts, corresponding to 51.6% of the two-dimensional fingerprint plot (Fig. 5 ▸ b). Significant contributions by reciprocal O⋯H/H⋯O (13.4%) and S⋯H/H⋯S (12.5%) contacts appear as two symmetrical spikes at d e + d i ≃ 2.2 and 2.8 Å, respectively (Fig. 5 ▸ c,d). Smaller contributions are from C⋯H/H⋯C (11.7%, Fig. 5 ▸ e), N⋯C/C⋯N (5.3%, Fig. 5 ▸ f), C⋯C (3.2%), N⋯H/H⋯N (1.6%), C⋯O/O⋯C (0.3%), C⋯S/S⋯C (0.3%) and O⋯O contacts (0.1%).
Figure 4.
The Hirshfeld surface mapped over d norm for (3) in the range −0.3153 to 1.2662 a.u.
Figure 5.
Full two-dimensional fingerprint plots for (3), showing (a) all interactions, and delineated into (b) H⋯H, (c) O⋯H/H⋯O, (d) S⋯H/H⋯S, (e) C⋯H/H⋯C and (f) N⋯C/C⋯N interactions. The d i and d e values are the closest internal and external distances (in Å) from a given point on the Hirshfeld surface.
Database survey
A search of the Cambridge Structural Database (CSD, Version 5.40, update of May 2019; Groom et al., 2016 ▸) for the central N—C(=S)—NH—N=C moiety (Fig. 6 ▸ a) present in the title compound gave 583 hits. Fig. 6 ▸ b,c illustrate the histograms of the distribution of torsion angles τ1 and τ2. The histogram of τ1 shows a major preference for the −sp/+sp (or cis) conformation and a minor preference for the −ap/+ap (or trans) conformation. For torsion angle τ2, only one region is preferred: a narrow spread in the region −ap/+ap (or trans). For (3), the torsion angles τ1 and τ2 are both in the +ap region [τ1 = 173.8 (3) and τ2 = 162.4 (3)°].
Figure 6.
(a) Fragment used for a search in the CSD. (b),(c) Histograms of torsion angles τ1 and τ2. The vertical pink lines show the torsion angle observed in (3).
The most similar compound present in the CSD is the 2-hydroxynaphthaldehyde-based thiosemicarbazone (refcode IDEQAM; Aneesrahman et al., 2018 ▸). The asymmetric unit contains two molecules (one morpholino ring shows disorder). The mean plane of the non-disordered morpholino ring makes an angle of 36.9 (7)° with the naphthalene ring system. The torsion angles τ1 [175.89 (15) and −175.97 (15)°] and τ2 [166.51 (16) and −174.99 (16)°] are similar to those observed for the title compound. An intramolecular hydrogen bond similar to O18—H18⋯N10 is also observed.
Synthesis and crystallization
The reaction scheme for the synthesis of (3) is given in Fig. 7 ▸.
Figure 7.
Reaction scheme for the synthesis of (3).
Synthesis of 2-((morpholine-4-carbonothioyl)thio)acetic acid (1) :
A mixture consisting of carbon disulfide (0.2 mol) and concentrated ammonia (25 mL) was stirred to form a homogeneous solution at 278 K. Then, morpholine (0.2 mol) was added dropwise to this solution. The yellow solid that separated from the solution was filtered off and immediately dissolved in deionized water (300 mL) at room temperature to generate a yellow solution. Sodium chloroacetate (0.2 mol) was added to this solution and the reaction mixture maintained for 6 h at room temperature. The yellowish solution was acidified with concentrated hydrochloric acid and the resulting white precipitate was filtered off and recrystallized from ethanol.
Synthesis of N(4)-morpholinothiosemicarbazide (2) :
A mixture composed of (1) (50 mmol), deionized water (10 mL) and hydrazine hydrate (25 mL) was refluxed for 30 minutes at 353 K. The white solid which precipitated from the transparent solution was filtered off and recrystallized from ethanol to give (2).
Synthesis of salicylaldehyde N(4)-morpholinothiosemicarbazone (3) :
After dissolving (2) in hot ethanol, the solution was added to an equivalent amount of salicylaldehyde. The final solution was refluxed at 353 K for 2 h in the presence of acetic acid as a catalyst. The resulting solution was gradually reduced in volume at room temperature overnight. The needle-shaped crystals that formed were filtered off and recrystallized from ethanol to give (3) in the form of transparent crystals (yield 60%), m.p. 461–463 K. FT–IR (cm−1): 3436 (O—H), 3279 (N—H), 1617 (CAr—H), 1540 (C=N), 1061 (N—N), 1348 and 959 (C=S). 1H NMR [Bruker 500 MHz, d6-DMSO, δ (ppm), J (Hz)]: 3.67 (4H, t, H2 and H6); 3.92 (4H, t, H3 and H5); 6.90 (2H, m, H14 and H16); 7.28 (1H, m, J = 7.5, H15); 7.41 (1H, d, J = 7.0, H17); 8.47 (1H, s, H11); 11.49 (1H, br, N—H); 11.55 (1H, br, O—H). 13C NMR [Bruker 125 MHz, d6-DMSO, δ (ppm)]: 49.4 (C2 and C6), 66.2 (C3 and C5), 117.0 (C14), 118.9 (C12), 119.5 (C16), 130.4 (C17), 131.3 (C15), 146.9 (C13), 157.6 (C11), 180.1 (C7). UV–Vis (ethanol, nm): 200 (π→π*); 300 and 350 (n→π*).
Refinement
Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. Both H atoms H9 and H18 were located from difference electron density maps and refined freely. The other H atoms were placed in idealized positions and included as riding contributions with U iso(H) values 1.2U eq of the parent atoms, with C—H distances of 0.93 (aromatic, CH=N) and 0.97 Å (CH2). In the final cycles of refinement, 4 outliers were omitted.
Table 2. Experimental details.
| Crystal data | |
| Chemical formula | C12H15N3O2S |
| M r | 265.33 |
| Crystal system, space group | Orthorhombic, P n a21 |
| Temperature (K) | 293 |
| a, b, c (Å) | 11.7579 (4), 15.0584 (5), 7.1103 (3) |
| V (Å3) | 1258.92 (8) |
| Z | 4 |
| Radiation type | Mo Kα |
| μ (mm−1) | 0.26 |
| Crystal size (mm) | 0.5 × 0.2 × 0.1 |
| Data collection | |
| Diffractometer | Rigaku Oxford Diffraction SuperNova, Single source at offset/far, Eos |
| Absorption correction | Multi-scan (CrysAlis PRO; Rigaku OD, 2018 ▸) |
| T min, T max | 0.483, 1.000 |
| No. of measured, independent and observed [I > 2σ(I)] reflections | 12278, 2565, 2314 |
| R int | 0.025 |
| (sin θ/λ)max (Å−1) | 0.625 |
| Refinement | |
| R[F 2 > 2σ(F 2)], wR(F 2), S | 0.034, 0.087, 1.07 |
| No. of reflections | 2565 |
| No. of parameters | 171 |
| No. of restraints | 1 |
| H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
| Δρmax, Δρmin (e Å−3) | 0.17, −0.17 |
| Absolute structure | Flack x determined using 938 quotients [(I +)−(I −)]/[(I +)+(I −)] (Parsons et al., 2013 ▸) |
| Absolute structure parameter | 0.02 (3) |
Supplementary Material
Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989019011812/mw2147sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989019011812/mw2147Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989019011812/mw2147Isup3.cml
CCDC reference: 1949697
Additional supporting information: crystallographic information; 3D view; checkCIF report
Acknowledgments
LVM thanks the Hercules Foundation for supporting the purchase of the diffractometer through project AKUL/09/0035.
supplementary crystallographic information
Crystal data
| C12H15N3O2S | Dx = 1.400 Mg m−3 |
| Mr = 265.33 | Mo Kα radiation, λ = 0.71073 Å |
| Orthorhombic, Pna21 | Cell parameters from 5842 reflections |
| a = 11.7579 (4) Å | θ = 3.2–27.3° |
| b = 15.0584 (5) Å | µ = 0.26 mm−1 |
| c = 7.1103 (3) Å | T = 293 K |
| V = 1258.92 (8) Å3 | Block, colourless |
| Z = 4 | 0.5 × 0.2 × 0.1 mm |
| F(000) = 560 |
Data collection
| Rigaku Oxford Diffraction SuperNova, Single source at offset/far, Eos diffractometer | 2565 independent reflections |
| Radiation source: micro-focus sealed X-ray tube, SuperNova (Mo) X-ray Source | 2314 reflections with I > 2σ(I) |
| Mirror monochromator | Rint = 0.025 |
| Detector resolution: 15.9631 pixels mm-1 | θmax = 26.4°, θmin = 2.7° |
| ω scans | h = −14→14 |
| Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2018) | k = −18→18 |
| Tmin = 0.483, Tmax = 1.000 | l = −8→8 |
| 12278 measured reflections |
Refinement
| Refinement on F2 | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: mixed |
| R[F2 > 2σ(F2)] = 0.034 | H atoms treated by a mixture of independent and constrained refinement |
| wR(F2) = 0.087 | w = 1/[σ2(Fo2) + (0.0434P)2 + 0.1653P] where P = (Fo2 + 2Fc2)/3 |
| S = 1.07 | (Δ/σ)max < 0.001 |
| 2565 reflections | Δρmax = 0.17 e Å−3 |
| 171 parameters | Δρmin = −0.17 e Å−3 |
| 1 restraint | Absolute structure: Flack x determined using 938 quotients [(I+)-(I-)]/[(I+)+(I-)] (Parsons et al., 2013) |
| Primary atom site location: dual space | Absolute structure parameter: 0.02 (3) |
Special details
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2)
| x | y | z | Uiso*/Ueq | ||
| N1 | 0.12956 (17) | 0.37994 (13) | 0.5311 (5) | 0.0441 (5) | |
| C2 | 0.1602 (2) | 0.28850 (18) | 0.4815 (5) | 0.0438 (7) | |
| H2A | 0.174911 | 0.254390 | 0.594672 | 0.053* | |
| H2B | 0.228621 | 0.288274 | 0.405192 | 0.053* | |
| C3 | 0.0625 (3) | 0.2474 (2) | 0.3728 (5) | 0.0552 (8) | |
| H3A | 0.050961 | 0.280351 | 0.257136 | 0.066* | |
| H3B | 0.081833 | 0.186795 | 0.339747 | 0.066* | |
| O4 | −0.04027 (17) | 0.24774 (14) | 0.4794 (3) | 0.0545 (6) | |
| C5 | −0.0710 (2) | 0.3379 (2) | 0.5178 (7) | 0.0615 (9) | |
| H5A | −0.141436 | 0.338728 | 0.588879 | 0.074* | |
| H5B | −0.084419 | 0.368531 | 0.399814 | 0.074* | |
| C6 | 0.0177 (3) | 0.3860 (2) | 0.6249 (6) | 0.0597 (9) | |
| H6A | −0.003873 | 0.447934 | 0.636901 | 0.072* | |
| H6B | 0.023218 | 0.361089 | 0.750398 | 0.072* | |
| C7 | 0.2028 (2) | 0.44909 (15) | 0.5299 (5) | 0.0388 (6) | |
| S8 | 0.16206 (6) | 0.55578 (4) | 0.54532 (17) | 0.0552 (2) | |
| N9 | 0.31482 (18) | 0.42656 (14) | 0.5168 (4) | 0.0406 (6) | |
| H9 | 0.337 (2) | 0.3724 (19) | 0.521 (6) | 0.044 (8)* | |
| N10 | 0.39379 (18) | 0.49289 (14) | 0.4965 (3) | 0.0384 (6) | |
| C11 | 0.4978 (2) | 0.47549 (15) | 0.5317 (5) | 0.0366 (5) | |
| H11 | 0.519030 | 0.418814 | 0.569994 | 0.044* | |
| C12 | 0.5829 (2) | 0.54502 (15) | 0.5115 (4) | 0.0353 (6) | |
| C13 | 0.5532 (2) | 0.63316 (17) | 0.4666 (4) | 0.0394 (6) | |
| C14 | 0.6374 (3) | 0.69733 (19) | 0.4546 (5) | 0.0512 (8) | |
| H14 | 0.617815 | 0.755628 | 0.426000 | 0.061* | |
| C15 | 0.7497 (3) | 0.6758 (2) | 0.4845 (4) | 0.0542 (8) | |
| H15 | 0.805097 | 0.719608 | 0.475521 | 0.065* | |
| C16 | 0.7811 (2) | 0.5896 (2) | 0.5277 (6) | 0.0537 (7) | |
| H16 | 0.857037 | 0.575138 | 0.547403 | 0.064* | |
| C17 | 0.6977 (2) | 0.52566 (18) | 0.5408 (6) | 0.0466 (6) | |
| H17 | 0.718495 | 0.467720 | 0.570242 | 0.056* | |
| O18 | 0.44378 (18) | 0.65822 (14) | 0.4336 (4) | 0.0513 (6) | |
| H18 | 0.402 (3) | 0.617 (3) | 0.446 (6) | 0.073 (13)* |
Atomic displacement parameters (Å2)
| U11 | U22 | U33 | U12 | U13 | U23 | |
| N1 | 0.0326 (10) | 0.0409 (10) | 0.0590 (14) | −0.0031 (9) | 0.0038 (14) | −0.0046 (15) |
| C2 | 0.0354 (13) | 0.0407 (13) | 0.0551 (19) | −0.0024 (11) | 0.0056 (13) | −0.0046 (13) |
| C3 | 0.0576 (18) | 0.0553 (18) | 0.0528 (19) | −0.0181 (15) | 0.0075 (16) | −0.0038 (15) |
| O4 | 0.0436 (11) | 0.0530 (11) | 0.0670 (16) | −0.0148 (9) | 0.0020 (11) | 0.0020 (11) |
| C5 | 0.0376 (14) | 0.0584 (17) | 0.088 (3) | −0.0044 (13) | −0.0064 (19) | 0.014 (2) |
| C6 | 0.0370 (16) | 0.0545 (17) | 0.088 (3) | −0.0016 (14) | 0.0139 (17) | −0.0090 (18) |
| C7 | 0.0360 (12) | 0.0418 (12) | 0.0387 (14) | −0.0009 (10) | −0.0011 (15) | 0.0015 (15) |
| S8 | 0.0481 (4) | 0.0396 (3) | 0.0780 (6) | 0.0056 (3) | 0.0010 (5) | −0.0010 (5) |
| N9 | 0.0333 (11) | 0.0329 (10) | 0.0556 (16) | −0.0031 (8) | 0.0009 (12) | 0.0040 (12) |
| N10 | 0.0336 (11) | 0.0359 (10) | 0.0458 (15) | −0.0050 (9) | −0.0004 (10) | 0.0032 (10) |
| C11 | 0.0388 (13) | 0.0329 (10) | 0.0380 (13) | −0.0003 (9) | −0.0010 (14) | 0.0021 (14) |
| C12 | 0.0353 (12) | 0.0354 (11) | 0.0353 (16) | −0.0029 (9) | 0.0002 (12) | −0.0007 (12) |
| C13 | 0.0418 (14) | 0.0356 (12) | 0.0408 (15) | 0.0001 (11) | 0.0026 (12) | −0.0019 (12) |
| C14 | 0.0605 (19) | 0.0351 (13) | 0.0581 (19) | −0.0111 (13) | 0.0005 (16) | 0.0001 (14) |
| C15 | 0.0534 (17) | 0.0585 (17) | 0.0507 (19) | −0.0249 (15) | −0.0003 (15) | −0.0007 (15) |
| C16 | 0.0363 (14) | 0.0681 (17) | 0.0567 (18) | −0.0104 (13) | −0.0022 (17) | 0.0016 (19) |
| C17 | 0.0389 (14) | 0.0465 (13) | 0.0545 (16) | −0.0001 (11) | −0.0039 (18) | 0.0019 (18) |
| O18 | 0.0448 (11) | 0.0349 (10) | 0.0744 (15) | 0.0042 (9) | −0.0019 (11) | 0.0049 (10) |
Geometric parameters (Å, º)
| N1—C2 | 1.466 (3) | N9—H9 | 0.86 (3) |
| N1—C6 | 1.478 (4) | N9—N10 | 1.371 (3) |
| N1—C7 | 1.351 (3) | N10—C11 | 1.275 (3) |
| C2—H2A | 0.9700 | C11—H11 | 0.9300 |
| C2—H2B | 0.9700 | C11—C12 | 1.456 (3) |
| C2—C3 | 1.516 (4) | C12—C13 | 1.409 (3) |
| C3—H3A | 0.9700 | C12—C17 | 1.396 (4) |
| C3—H3B | 0.9700 | C13—C14 | 1.386 (4) |
| C3—O4 | 1.426 (3) | C13—O18 | 1.361 (3) |
| O4—C5 | 1.432 (4) | C14—H14 | 0.9300 |
| C5—H5A | 0.9700 | C14—C15 | 1.376 (4) |
| C5—H5B | 0.9700 | C15—H15 | 0.9300 |
| C5—C6 | 1.481 (5) | C15—C16 | 1.383 (4) |
| C6—H6A | 0.9700 | C16—H16 | 0.9300 |
| C6—H6B | 0.9700 | C16—C17 | 1.377 (4) |
| C7—S8 | 1.680 (2) | C17—H17 | 0.9300 |
| C7—N9 | 1.364 (3) | O18—H18 | 0.80 (4) |
| C2—N1—C6 | 112.7 (2) | N1—C7—N9 | 115.1 (2) |
| C7—N1—C2 | 124.4 (2) | N9—C7—S8 | 121.17 (18) |
| C7—N1—C6 | 121.5 (2) | C7—N9—H9 | 121.8 (18) |
| N1—C2—H2A | 110.0 | C7—N9—N10 | 118.7 (2) |
| N1—C2—H2B | 110.0 | N10—N9—H9 | 119.5 (18) |
| N1—C2—C3 | 108.6 (2) | C11—N10—N9 | 118.6 (2) |
| H2A—C2—H2B | 108.4 | N10—C11—H11 | 120.3 |
| C3—C2—H2A | 110.0 | N10—C11—C12 | 119.5 (2) |
| C3—C2—H2B | 110.0 | C12—C11—H11 | 120.3 |
| C2—C3—H3A | 109.3 | C13—C12—C11 | 121.9 (2) |
| C2—C3—H3B | 109.3 | C17—C12—C11 | 120.0 (2) |
| H3A—C3—H3B | 107.9 | C17—C12—C13 | 118.1 (2) |
| O4—C3—C2 | 111.7 (3) | C14—C13—C12 | 119.5 (3) |
| O4—C3—H3A | 109.3 | O18—C13—C12 | 122.3 (2) |
| O4—C3—H3B | 109.3 | O18—C13—C14 | 118.1 (3) |
| C3—O4—C5 | 108.6 (2) | C13—C14—H14 | 119.6 |
| O4—C5—H5A | 109.1 | C15—C14—C13 | 120.7 (3) |
| O4—C5—H5B | 109.1 | C15—C14—H14 | 119.6 |
| O4—C5—C6 | 112.6 (2) | C14—C15—H15 | 119.6 |
| H5A—C5—H5B | 107.8 | C14—C15—C16 | 120.8 (3) |
| C6—C5—H5A | 109.1 | C16—C15—H15 | 119.6 |
| C6—C5—H5B | 109.1 | C15—C16—H16 | 120.6 |
| N1—C6—C5 | 111.4 (3) | C17—C16—C15 | 118.7 (3) |
| N1—C6—H6A | 109.4 | C17—C16—H16 | 120.6 |
| N1—C6—H6B | 109.4 | C12—C17—H17 | 118.9 |
| C5—C6—H6A | 109.4 | C16—C17—C12 | 122.1 (3) |
| C5—C6—H6B | 109.4 | C16—C17—H17 | 118.9 |
| H6A—C6—H6B | 108.0 | C13—O18—H18 | 110 (3) |
| N1—C7—S8 | 123.73 (19) | ||
| N1—C2—C3—O4 | −58.7 (4) | N9—N10—C11—C12 | −179.9 (3) |
| N1—C7—N9—N10 | 173.8 (3) | N10—C11—C12—C13 | 4.5 (5) |
| C2—N1—C6—C5 | −50.2 (4) | N10—C11—C12—C17 | −176.9 (3) |
| C2—N1—C7—S8 | 167.6 (3) | C11—C12—C13—C14 | 178.1 (3) |
| C2—N1—C7—N9 | −13.0 (5) | C11—C12—C13—O18 | −2.1 (4) |
| C2—C3—O4—C5 | 62.2 (4) | C11—C12—C17—C16 | −178.5 (4) |
| C3—O4—C5—C6 | −59.5 (4) | C12—C13—C14—C15 | 0.6 (5) |
| O4—C5—C6—N1 | 53.7 (4) | C13—C12—C17—C16 | 0.2 (5) |
| C6—N1—C2—C3 | 51.7 (4) | C13—C14—C15—C16 | −0.2 (5) |
| C6—N1—C7—S8 | −27.0 (5) | C14—C15—C16—C17 | −0.2 (5) |
| C6—N1—C7—N9 | 152.5 (3) | C15—C16—C17—C12 | 0.2 (6) |
| C7—N1—C2—C3 | −141.7 (3) | C17—C12—C13—C14 | −0.6 (4) |
| C7—N1—C6—C5 | 142.7 (3) | C17—C12—C13—O18 | 179.3 (3) |
| C7—N9—N10—C11 | 162.4 (3) | O18—C13—C14—C15 | −179.3 (3) |
| S8—C7—N9—N10 | −6.7 (4) |
Hydrogen-bond geometry (Å, º)
| D—H···A | D—H | H···A | D···A | D—H···A |
| N9—H9···O4i | 0.86 (3) | 2.33 (3) | 3.141 (3) | 157 (3) |
| O18—H18···N10 | 0.80 (4) | 1.91 (5) | 2.597 (3) | 145 (4) |
| C6—H6A···S8 | 0.97 | 2.62 | 3.121 (3) | 112 |
| C15—H15···O18ii | 0.93 | 2.48 | 3.404 (4) | 176 |
Symmetry codes: (i) x+1/2, −y+1/2, z; (ii) x+1/2, −y+3/2, z.
References
- Aneesrahman, K. N., Rohini, G., Bhuvanesh, N. S. P., Sundararaj, S., Musthafa, M. & Sreekanth, A. (2018). ChemistrySelect 3, 8118–8130.
- Berners-Price, S. J. (2011). Angew. Chem. Int. Ed. 50, 804–805. [DOI] [PubMed]
- Bindu, P., Kurup, M. R. P. & Satyakeerty, T. R. (1998). Polyhedron, 18, 321–331.
- Chen, J., Huang, Y. W., Liu, G., Afrasiabi, Z., Sinn, E., Padhye, S. & Ma, Y. (2004). Toxicol. Appl. Pharmacol. 197, 40–48. [DOI] [PubMed]
- Dilović, I., Rubcić, M., Vrdoljak, V., Kraljević Pavelić, S., Kralj, M., Piantanida, I. & Cindrić, M. (2008). Bioorg. Med. Chem. 16, 5189–5198. [DOI] [PubMed]
- Dolomanov, O. V., Bourhis, L. J., Gildea, R. J., Howard, J. A. K. & Puschmann, H. (2009). J. Appl. Cryst. 42, 339–341.
- Go, R. S. & Adjei, A. A. (1999). J. Clin. Oncol. 17, 409–422. [DOI] [PubMed]
- Groom, C. R., Bruno, I. J., Lightfoot, M. P. & Ward, S. C. (2016). Acta Cryst. B72, 171–179. [DOI] [PMC free article] [PubMed]
- Harbour, J. W., Murray, T. G., Hamasaki, D., Cicciarelli, N., Hernández, E., Smith, B., Windle, J. & O’Brien, J. M. (1996). Invest. Ophthalmol. Vis. Sci. 37, 1892–1898. [PubMed]
- Koo, C. H., Kim, H. S. & Ahn, C. H. (1977). J. Korean Chem. Soc. 21, 3–15.
- Lévi, F., Metzger, G., Massari, C. & Milano, G. (2000). Clin. Pharmacokinet. 38, 1–21. [DOI] [PubMed]
- Liberta, A. E. & West, D. X. (1992). Biometals, 5, 121–126. [DOI] [PubMed]
- McKinnon, J. J., Jayatilaka, D. & Spackman, M. A. (2007). Chem. Commun. 3814–3816. [DOI] [PubMed]
- Parsons, S., Flack, H. D. & Wagner, T. (2013). Acta Cryst. B69, 249–259. [DOI] [PMC free article] [PubMed]
- Rigaku OD (2018). CrysAlis PRO. Rigaku Oxford Diffraction, Yarnton, UK.
- Sheldrick, G. M. (2015a). Acta Cryst. A71, 3–8.
- Sheldrick, G. M. (2015b). Acta Cryst. C71, 3–8.
- Shi, L., Mao, W. J., Yang, Y. & Zhu, H. L. (2009). J. Coord. Chem. 62, 3471–3477.
- Spackman, M. A. & Jayatilaka, D. (2009). CrystEngComm, 11, 19–32.
- Turner, M. J., McKinnon, J. J., Wolff, S. K., Grimwood, D. J., Spackman, P. R., Jayatilaka, D. & Spackman, M. A. (2017). CrystalExplorer17. University of Western Australia. http://hirshfeldsurface.net
Associated Data
This section collects any data citations, data availability statements, or supplementary materials included in this article.
Supplementary Materials
Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989019011812/mw2147sup1.cif
Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989019011812/mw2147Isup2.hkl
Supporting information file. DOI: 10.1107/S2056989019011812/mw2147Isup3.cml
CCDC reference: 1949697
Additional supporting information: crystallographic information; 3D view; checkCIF report







