Abstract
The biology of primary lytic Kaposi’s sarcoma-associated herpesvirus (KSHV) infection is still not well understood, which is largely attributed to the lack of cell lines permissive to robust lytic KSHV infection in vitro. Our study demonstrates that primary human dermal lymphatic microvascular endothelial cells (HDLMEC) support lytic KSHV replication following de novo infection, resulting in robust KSHV production, indicating that HDLMECs are suitable for studying the regulation of primary lytic KSHV infection. Importantly, by utilizing lytically infected HDLMECs, we show for the first time that the KSHV latent genes LANA and viral cyclin are required for lytic replication during de novo lytic infection, a function of these latent genes that has not yet been recognized. Since Kaposi’s sarcoma is considered to be originated from infected lymphatic endothelial cells, HDLMECs represent a valuable in vitro cell culture model for investigating lytic KSHV infection, which has been understudied in KSHV pathogenesis.
Keywords: KSHV, lytic infection, lymphatic endothelial cells, latent genes, herpesvirus
Introduction
Kaposi’s sarcoma-associated herpesvirus (KSHV) is a human gammaherpesvirus, which can cause a number of cancers that are derived from either latently infected lymphatic endothelial cells such as Kaposi’s sarcoma (KS) or latently infected B cells such as primary effusion lymphoma (Cesarman, 2011; Mesri et al., 2010). While latent infection is essential for the development of KSHV-associated tumors, the lytic phase is also crucial to many aspects of the pathogenesis of KSHV infection (Cavallin et al., 2014; Giffin and Damania, 2014). The lytic cycle, which is controlled by the viral replication and transcription activator protein called RTA, can be initiated either following primary infection or by reactivation from latently infected cells (Duus et al., 2004; Gao et al., 2003; Nakamura et al., 2003; Sun et al., 1998). The viral proteins expressed during the lytic phase have a wide range of functions besides driving virus production. They can regulate cell survival, cell cycle, and viral immune evasion, while some of the lytic proteins possess oncogenic activity whose expression is often detected in a subset of cancer cells in KSHV-associated tumors, suggesting that these lytic proteins may also contribute to the transformation and/or persistence of infected cells (Cavallin et al., 2014; Giffin and Damania, 2014). Further evidence that the lytic cycle of KSHV plays a role in viral oncogenesis came from the discovery that anti-herpesviral drugs that block lytic replication, but not latent replication, resulted in a reduction of KS lesion size in patients and an impaired progression to KS for those at risk (Martin et al., 1999; Mocroft et al., 1996). Finally, it is also appreciated that the continual lytic replication of KSHV may produce virus to re-seed a latently infected cell population, which can promote the growth of KSHV-associated cancers (Grundhoff and Ganem, 2004). Therefore, studying KSHV genes in the regulation of the lytic cycle is crucial to fully understand KSHV pathogenesis.
Since the default pathway of KSHV infection in vitro is the establishment of viral latency, the function of viral genes in the lytic phase is mostly assessed during lytic reactivation, which is triggered by either RTA overexpression or chemical inducers in latently infected cells (Bechtel et al., 2003; Nakamura et al., 2003; Purushothaman et al., 2015). While these lytic reactivation cell culture models provided vast information about the role of viral factors in KSHV lytic cycle, they have limitations. For example, if viral latent genes may have critical roles during both the latent and lytic phases, they would be difficult to study in the lytic cycle because their role in latency could also affect lytic reactivation. Thus, it is imperative that we study the contribution of viral genes directly in lytic infection. Although oral epithelial cells and human umbilical vein endothelial cells (HUVEC) have been shown to support lytic replication to some degree following de novo infection, neither oral epithelial cells nor HUVECs proved to be permissive to robust KSHV lytic infection (Duus et al., 2004; Gao et al., 2003). Thus, we still lack a permissive cell culture model, which could be used to study primary lytic KSHV infection similarly to alpha- and beta-herpesviruses.
Recently, it has been reported that primary lymphatic endothelial cells (LEC) stably infected by KSHV for 2 weeks displayed not only latent, but also widespread lytic gene expression and a very low amount of virus production (Chang and Ganem, 2013). Since KSHV is known to undergo a temporary and limited lytic phase during de novo infection, even in cells in which KSHV ultimately establishes tight latency (Krishnan et al., 2004), we hypothesized that primary LECs may support a potent lytic viral replication program following de novo infection. This hypothesis prompted us to test whether or not primary LECs can support a more robust lytic KSHV replication and virus production following de novo infection, as opposed to stably infected LECs. In this report, we show that de novo KSHV infection of human dermal lymphatic microvascular endothelial cells (HDLMEC) results in robust lytic replication and virus production by 4 days postinfection. The quantity of infectious virions, which was produced from de novo infected HDLMECs, was at least 400 times greater than the amount of virus produced by stably infected LECs as reported previously (Chang and Ganem, 2013). Furthermore, we present evidence for the first time that the KSHV latent genes LANA and viral cyclin, in addition to their roles in regulating latency, are essential for KSHV replication during lytic infection.
Materials and Methods
Primary cells and cell lines
Primary human adult, dermal lymphatic microvascular endothelial cells (HDLMEC) were purchased from Lonza (CC-2810) and cultured in microvascular endothelial cell growth medium, which contained 5% FBS and a combination of growth factors (CC-3202). HDLMECs were used between passages 6 and 9 for the experiments. The 293T cells and the iSLKBAC16 cell lines, which were used for the production of wild type and the latent gene knockout BAC16 mutants, were maintained in DMEM containing 10% FBS, 100 U/ml penicillin, and 100 µg/ml streptomycin. The TRExBCBL1-3xFLAG-RTA cell line was cultured in RPMI containing 10% Tet-approved FBS (Clontech), 100 U/ml penicillin, and 100 µg/ml streptomycin (Papp et al., 2018).
Virus Production and infection of HDLMECs
The construction of latent gene knockout BAC16 viruses and the establishment of their corresponding iSLK cell lines have been published previously (Toth et al., 2016). KSHV production has been described in detail in our previous study (Toth et al., 2017). To generate wild type and latent gene knockout KSHV, iSLKBAC16 cell lines were reactivated using 1 µg/ml doxycycline and 1 mM sodium butyrate. To produce KSHV from the TRExBCBL1-3xFLAG-RTA cell line, cells were treated with 1 µg/ml doxycycline. Four days after initiating lytic reactivation, the supernatants were collected and concentrated by ultracentrifugation. For infection, 1.5×105 HDLMECs were plated per well on six-well tissue culture plates. 24 hours later, the cells were infected by spinoculation (2000 rpm, 45 min, 30°C) at different multiplicities of infection (MOI). 2 hours later, the media was removed, the cells were washed with PBS, and fresh medium was added to the cells.
Microscopy and immunofluorescence analysis
At 48 hours postinfection (hpi), infected HDLMECs were fixed with 4% paraformaldehyde, permeabilized by 0.5% Triton X-100, washed twice with washing buffer (PBS with 0.2% Tween-20), and then incubated in blocking buffer (5% FBS, 0.2% fish skin gelatin, and 0.2% Tween-20 in PBS) for 30 min. Rabbit anti-ORF6 antibody and rabbit IgG (negative control) were diluted in blocking buffer and used to stain the cells for 2 hours at room temperature. Subsequently, the cells were washed three times with washing buffer and then incubated with anti-rabbit Alexa Fluor 568 antibody (Invitrogen) for 45 min at room temperature. Cells were washed with washing buffer three times and then stained with DAPI to visualize the nuclei. For GFP imaging and the immunofluorescence analyses, a Revolve fluorescence microscope (Echo Laboratories) was used.
Antibodies and immunoblot assay
Antibodies utilized in this study: mouse anti-Tubulin (GTU-88, Sigma), mouse anti-ORF45 (sc-53883, Santa Cruz), mouse anti-K8 (sc-57889, Santa Cruz), mouse anti-K8.1 (sc-65446, Santa Cruz), mouse anti-ORF26 (2F6B8) (NBP1-47357, Novus Biologicals). Rabbit anti-ORF6 was generously provided by Dr. Gary S. Hayward (Johns Hopkins University). HDLMECs were lysed in 2x Laemmli buffer (Bio-Rad) containing 2-mercaptoethanol, and protein concentration was measured by using a Pierce 660nm Protein Assay Kit. Proteins separated on a 10% acrylamide gel were transferred onto a PVDF membrane, which was then blocked with 5% non-fat dry milk in PBS with 0.1% Tween-20 (PBST), and incubated overnight with primary antibody at 4°C. The next day, the PVDF membrane was washed three times with PBST, incubated with HRP-linked secondary antibody for 1–2 hours at room temperature, washed three times in PBST, and then developed using SuperSignal West Femto (Thermo Scientific), and imaged on a Bio-Rad ChemiDoc Imager.
Quantification of viral RNA and DNA
Total RNA was extracted by Trizol (Sigma) from infected cells. cDNA was prepared from 500 ng of DNase I-treated RNA using the iScript cDNA Synthesis Kit (Bio-Rad). Viral mRNA expression was quantified by qPCR in a CFX96 real time PCR machine using SYBR Green supermix (Bio-Rad). Viral gene expression was normalized to the level of 18S using the 2−∆Ct method. To prepare DNA, KSHV-infected cells were lysed in RIPA buffer and sonicated in a Bioruptor Pico (Diagenode) for 30 sec. Total DNA was isolated using the phenol-chloroform extraction method. 10 ng of total DNA was measured in qPCR and the fold change in the viral DNA load was calculated by the 2−∆∆Ct method. Primer sequences have been published previously (Toth et al., 2016). An unpaired student’s two-tailed T test was used to determine statistical significance.
Flow cytometry to determine virus titer
To calculate the virus titer, KSHV-infected HDLMEC-derived supernatant was used to infect 293T cells. One day prior to infection, 2.5×105 293T cells were plated per well on six-well tissue culture plates. 293T cells were infected with 2 ml of media containing 0.4–1 ml of HDLMEC-derived supernatant using spinoculation. 24 hours after infection, the cells were harvested, fixed in 4% paraformaldehyde, and resuspended in FACS buffer (1% FBS and 4 mM EDTA in PBS). The percentage of GFP+ cells was quantified on a BD Accuri C6 flow cytometer (BD Biosciences), which was used to calculate the yield of KSHV as infectious units (IU)/ml.
Results and Discussion
Characterization of lytic KSHV infection in human dermal lymphatic microvascular endothelial cells
We infected HDLMECs with the KSHV clone BAC16, which constitutively expresses a GFP as a marker for the identification of infected cells (Brulois et al., 2012). While spindle cell conversion, a phenotype induced by KSHV infection of endothelial cells, could be observed by 24 hours postinfection (hpi), we also noticed an increasing number of cells that were rounded up by 72–96 hpi, which was reminiscent of a cytopathic effect due to advanced lytic infection (Fig. 1A). In fact, immunofluorescence analysis of BAC16-infected HDLMECs revealed that the early viral protein ORF6 was expressed in the majority of infected cells at 48 hpi, indicating lytic infection (Fig. 1B). To show whether or not HDLMECs indeed support lytic viral replication following de novo KSHV infection, we measured the virus production in infected HDLMECs at 72 hpi (Fig. 1C and D). Since the lytic replication and virus production of KSHV depends on viral DNA polymerase-mediated viral DNA synthesis, the virus production was tested both in the absence and the presence of 100 µM of viral DNA polymerase inhibitor phosphonoacetic acid (PAA). We found that while the PAA treatment did not affect the production of the early viral protein ORF45, it did greatly reduce the expression of late protein ORF26 (Fig. 1C) and virus production (Fig. 1D), confirming the lytic infection of HDLMECs by KSHV.
To analyze the progress of lytic KSHV infection in HDLMECs, we performed a time course KSHV infection and analyzed lytic viral gene expression, viral DNA replication, and virus production. In Figure 2A, immunoblot analyses show that early (ORF6, K8) and late (K8.1, ORF26) viral proteins were expressed in infected HDLMECs in a temporally ordered manner, which is characteristic for lytic herpesviral infection. The gradual induction of KSHV genes in the course of HDLMEC infection was also confirmed by RT-qPCR measurement of viral mRNAs (Fig. 2B). In line with the increasing viral gene expression over time, we also detected increasing viral DNA copy number (Fig. 2C) and infectious virion production (Fig. 2D).
Importantly, when HDLMECs were infected with an increasing amount of KSHV BAC16, the cells responded with increased virus production, supporting the notion that HDLMECs are permissive to lytic KSHV infection (Fig. 3A). We calculated that we could get more than 400,000 IU/ml virus titer at 96 hpi by spin infection of 150,000 HDLMECs with KSHV at an MOI of 1. In comparison, stably infected LECs were reported to produce ~1000 IU/ml (Chang and Ganem, 2013). We note, however, that in line with the previous study by Chang and Ganem, we could also obtain a stably infected HDLMEC cell culture after 10 days postinfection (data not shown), which is likely derived from a fraction of cells that successfully survived infection, and could proliferate to form a latently infected cell population (Chang and Ganem, 2013). To verify that the lytic de novo infection of HDLMECs is not specific for the recombinant KSHV clone BAC16, HDLMECs were also infected with wild-type (WT) KSHV derived from a KSHV+ primary effusion lymphoma cell line (BCBL1) (Fig. 3B). We found that BCBL1-derived KSHV infection of HDLMECs also led to virus production. We note that primary effusion lymphoma cell line-derived KSHV has been used before for infection of primary dermal microvascular endothelial cells (HDMEC), but robust lytic replication was not observed following de novo KSHV infection (Ciufo et al., 2001). Importantly, HDMECs isolated from donors are usually composed of a mixed population of blood vascular endothelial cells (BEC) and lymphatic endothelial cells (LEC), and it has been shown that KSHV infection of BECs results in latency, while LEC infection is more prone to show widespread induction of lytic genes (Chang and Ganem, 2013). Thus, the different ratio of BECs and LECs in a HDMEC culture can affect the outcome of de novo KSHV infection, which can be one of the reasons that different investigators may observe varying degrees of lytic gene expression and virus production in KSHV-infected HDMECs. In our experiments we used LEC-enriched HDLMECs for de novo KSHV infection. In addition, it is also known that lymphatic endothelial cells have a unique gene expression program driven by a set of specific transcription factors such as Prox1, Sox18, and COUP-TFII (Watabe, 2012). Thus, it is also conceivable that depending on how LECs were isolated, and the cell culture conditions, these may affect the expression of the LEC transcription factors and their target genes, which can also influence the susceptibility of LECs to lytic KSHV infection. Further studies will be required to test these possibilities. Altogether, our data support the notion that HDLMECs are permissive to lytic KSHV infection, supporting the completion of the full viral lytic cycle following de novo infection.
Analysis of the requisite of latent genes for KSHV lytic infection
To further validate that HDLMECs can be used to test the function of KSHV genes in lytic KSHV infection, we tested the replicative fitness of latent gene-knockout BAC16 mutants in comparison to WT BAC16. The latent genes are a set of four protein-coding ORFs and 12 viral miRNAs expressed from the latency locus of the KSHV genome, which have been implicated in the suppression of the lytic cycle and the regulation of the establishment and maintenance of viral latency (Plaisance-Bonstaff et al., 2014; Toth et al., 2016; Ye et al., 2011). However, it is also known that the latent genes of KSHV, which are constitutively expressed in infected cells, can regulate cellular pathways that intersect both latency and lytic reactivation. It is possible that the latent viral factors, whose expression increases in HDLMECs during de novo KSHV infection, can also affect KSHV replication following primary lytic infection, a possibility that has not yet been investigated before (Fig. 4A). To test this idea, we produced WT, latent gene knockout (KO), and latency locus deletion (Laloc KO) BAC16 viruses using iSLK KSHV-producing cell lines as published previously (Toth et al., 2016). HDLMECs were infected with the same titer of WT and BAC16 mutants, and then we measured the viral DNA copy number at 2 hpi (input viral DNA load) and at 96 hpi (replicated viral DNA) as well as virus production (Fig. 4B–G). We found that while the input viral DNA levels of BAC16 mutants were comparable with that of WT BAC16 at 2 hpi (Fig. 4A and D), viral DNA replication (Fig. 4B and E) and virus production (Fig. 4C and F) were significantly diminished in the latency-associated nuclear antigen (LANA) KO and viral Cyclin (v-Cyc) KO BAC16-infected cells and also reduced in the case of the Laloc KO BAC16 infection. Importantly, these experiments demonstrate for the first time that LANA and v-Cyc (homolog to cellular cyclin D) are essential for KSHV DNA replication and virus production during primary lytic infection. In contrast, studies on LANA during latent infection showed a repressive role for LANA where it can block the lytic cycle by various mechanisms such as recruiting polycomb proteins to the incoming viral DNA during de novo latent infection, inhibiting KSHV lytic gene expression, or directly suppressing oriLyt-dependent viral DNA replication during latency (Li et al., 2008; Rossetto et al., 2009; Toth et al., 2016; Verma et al., 2006; Ye et al., 2008). Interestingly, the homolog of KSHV LANA in MHV68 was reported to facilitate lytic viral replication and virus production, which was partly attributed to the inhibition of cellular stress by MHV68 LANA during infection (Forrest et al., 2007). KSHV LANA was also shown to promote the proliferation and the survival of infected cells, which can contribute to its positive effect on lytic viral infection (Wei et al., 2016). We note, however, that we did not see increased cell death in LANA KO BAC16-infected cells compared to WT BAC16-infected cells, which would explain the lack of virus production in LANA KO KSHV-infected cells (data not shown). Importantly, KSHV LANA interacts with not only transcription repressors, but also activators, which can be involved in LANA-mediated lytic viral infection (Hu et al., 2014; Wong et al., 2004). Similarly, KSHV v-Cyc has been shown to control latently infected cells, while MHV68 v-Cyc was found to be critical for lytic reactivation of MHV68 in mice (Sarek et al., 2010; van Dyk et al., 2000). Since KSHV v-Cyc can interact with and boost the activity of several cyclin-dependent kinases involved in transcriptional regulation, it will be important to test in the future if CDK/v-Cyc interactions play any role in facilitating lytic KSHV infection through viral gene regulation (Chang and Li, 2008; Li et al., 1997). Interestingly, we found that while the replication and virus production of Laloc KO BAC16 was significantly less relative to WT BAC16, they were higher compared to LANA KO or v-Cyc KO, suggesting that the latent genes may have both positive and negative roles in lytic KSHV infection. We note that both LANA KO and v-Cyc KO KSHV can be produced from latently infected iSLK cells upon lytic reactivation (Toth et al., 2016). However, virus production from iSLKBAC16 cell lines requires the overexpression of RTA along with the addition of a histone deacetylase inhibitor to the cells, which creates a robust condition for strong lytic reactivation. In contrast, HDLMEC infection reflects a natural infection, which is less efficient compared to the iSLK system. Additional experiments will be required to determine the role of LANA and v-Cyc in natural lytic KSHV infection, which can be done by using lytically infected HDLMECs.
In summary, we found that in contrast to stably infected LECs, de novo infection of HDLMECs resulted in robust lytic KSHV replication and virus production by 4 dpi. We also demonstrated that lytic infection of HDLMECs can be used to reveal novel functions of viral genes in the lytic cycle of KSHV such as the previously unrecognized role of latent genes in promoting lytic KSHV infection. Since lymphatic endothelial cells are relevant to KS pathophysiology, HDLMECs prove to be a valuable cell culture model for investigating lytic KSHV infection in KSHV pathogenesis.
Highlights.
Lymphatic microvascular endothelial cells support primary lytic KSHV infection.
Primary lytic infection results in robust KSHV replication and virus production.
Latent genes LANA and viral cyclin are required for primary lytic KSHV infection.
Acknowledgements
We thank Dr. Jae U. Jung (University of Southern California) for providing the iSLK cell line. We are grateful to Dr. Gary S. Hayward (Johns Hopkins University) for providing the ORF6 antibody. We also thank Dr. Bernadett Papp (University of Florida) and members of the Toth lab for their valuable comments and discussions. This study was supported by the American Cancer Society Research Scholar Grant (RSG-18-221-01-MPC), NIH grant R01AI132554, UF Health Cancer Center A1 Accelerator Grant, and UF Research Opportunity Seed Fund. GG was supported by NIH Training Grant T90DE021990.
Footnotes
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