Skip to main content
. 2019 Aug 20;142(10):3176–3189. doi: 10.1093/brain/awz233

Table 4.

eQTL association summary table

eQTL (effect allele) Gene Database P-value Effect dir Tissue
rs2758605-C SEMA4A GTEx 1.8 × 10-5 + Artery - tibial
GTEx 4.3 × 10-3 + Brain - cerebellar hemisphere
GTEx 6.7 × 10-3 + Artery - coronary
GTEx 1.5 × 10-3 + Nerve - tibial
GTEx 0.01 + Brain - cerebellum
GTEx 0.03 + Brain - caudate
SLC25A44 GTEx 3.9 × 10-4 Nerve - tibial
GTEx 1.9 × 10-4 Artery - aorta
GTEx 2.8 × 10-3 Artery - tibial
PMF1 GTEx 1.1 × 10-4 Nerve - tibial
GTEx 0.02 Brain - substantia nigra
Braineac 2.3 × 10−4 + Brain - thalamus
Braineac 0.02 + Brain - putamen
SMG5 GTEx 1.1 × 10−4 Nerve - tibial
GTEx 0.02 Brain - substantia nigra
LMA GTEx 0.01 Brain - caudate
GTEx 0.02 Brain - putamen (basal ganglia)
rs72932727-C CARF GTEx 1.1 × 10−10 Artery – tibial
GTEx 0.01 Artery - aorta
FAM117B GTEx 2.1 × 10−7 Artery - aorta
GTEx 0.03 Artery - coronary
GTEx 0.03 Artery - tibial
ICA1L GTEx 7.7 × 10−4 + Artery - tibial
GTEx 0.04 + Artery - aorta
GTEx 0.04 Brain - nucleus accumbens (basal ganglia)
NBEAL1 GTEx 1.2 × 10−34 Artery - tibial
GTEx 1.3 × 10−19 Artery - aorta
GTEx 4.9 × 10−8 Artery - coronary
GTEx 0.03 Brain - hypothalamus
WDR12 GTEx 7.6 × 10−4 Brain - putamen (basal ganglia)
GTEx 5.0 × 10−4 Brain - amygdala
GTEx 1.4 × 10−3 Brain - nucleus accumbens (basal ganglia)
GTEx 0.04 Brain - substantia nigra
ABI2 GTEx 0.01 Nerve - tibial
rs9515201-A COL4A1 GTEx 0.02 Nerve - tibial
Braineac 2.1 × 10−3 + Brain - putamen
COL4A2 GTEx 0.01 + Brain - putamen (basal ganglia)

Significance threshold: 1.6 × 10−4.

The eQTLs that remained significant after multiple test correction are highlighted in bold.