Abstract
BACKGROUND
Human alphaB crystallin (HspB5) contains the alpha crystallin core domain, a series of antiparallel beta-strands organized into the characteristic beta sandwich of small heat shock proteins (sHsp). The full 3-dimensional structure for alpha crystallin has not been determined and the mechanism for the biological activity remains elusive because sHsp participate in multiple interactions with a broad range of target proteins that favor self-assembly of polydisperse fibrils and complexes. We selected human alphaB crystallin to study interactive sequences because it is involved in many human condensation, amyloid, and aggregation diseases and it is very sensitive to the destabilization of unfolding proteins. Sophisticated methods are being used to analyze and complete the structure of alphaB crystallin with the expectation of understanding sHsp function. This review considers the identification interactive sites on the surface of the alphaB crystallin, which may be the key to understanding the multifunctional activity of human alphaB crystallin.
SCOPE OF REVIEW
This review summarizes the research on the identification of the bioactive interactive sequences responsible for the function of human alphaB crystallin, a sHsp with chaperone-like activity.
MAJOR CONCLUSIONS
The multifunctional activity of human alphaB crystallin results from the interactive peptide sequences exposed on the surface of the molecule. The multiple, non-covalent, interactive sequences can account for the selectivity and sensitivity of alphaB crystallin to the initiation of protein unfolding.
GENERAL SIGNIFICANCE
Human alphaB crystallin may be an important part of an endogenous protective mechanism in aging cells and tissues.
1. INTRODUCTION
The interactive sequences in the small heat shock protein (sHsp) human alphaB crystallin (sHspB5) were determined using a novel experimental method known as pin arrays[1]. AlphaB crystallin was selected for study of the interactive sites because it is highly-soluble, and is protective against protein condensation, aggregation and amyloid formation in diseases of aging. In contrast to alpha A crystallin (sHspB4) and most sHsp, alphaB crystallin contains no cysteines. The use of human alphaB crystallin in our studies avoided the complications of sulfhydryl chemistry in the characterization of the functional interactions with destabilized target proteins. The study of the protein-protein interactions responsible for functional activity are complicated enough without including disulfide formation. Since human alphaB crystallin interacts with a variety of target proteins, and the number of target proteins is so large, early studies often considered sHSP to be promiscuous in their binding and the protein-protein interactions to be non-specific. Continued experimentation demonstrated that alphaB crystallin interactions were selective and depended on weak non-covalent interactions at a number of sites throughout the alphaB crystallin sequence. When mapped to the surface of computer models of alphaB crystallin, the interactive sequences appeared to form a network of highly sensitive areas for protein-protein interactions[2].
Pin array experiments allowed a systematic assessment of interactions between sequential peptides in the protein sequence of human alphaB crystallin and target proteins (figure 1). Sequential peptides from human alphaB crystallin were immobilized on pins organized in an array that matched a 96 well plate. Each well contained a known concentration of a target protein. In each well, the interactions between the synthetic peptides on each pin and the target protein were measured using a simple colorimetric method where the intensity of the color corresponded with the relative strength of the interaction between the peptide sequence and the target protein. The target proteins that were studied included cytoskeletal proteins and filaments, crystallins, chaperone target proteins, and signaling molecules[3]. The negative controls, myoglobin and apomyoglobin, which are rich in alpha helix, had no significant interactions with alphaB crystallin sequences. While the interactive sequences were separated along the primary sequence of human alphaB crystallin, the binding sequences for each category of target protein were connected when mapped to a space filling model of alphaB crystallin (2).
Nearly twenty years ago, a protective fragment of the sHSP, alpha A crystallin, Hsp4B, was identified in the Sharma laboratory using crosslinking, proteolysis, and sequencing[4]. The functional element was KFVIFLDVKHFSPEDLTVK which became known as a mini-alpha crystallin chaperone, MAC. A corresponding fragment, DRFSVNLDVKHFSPEELKVK, was identified in alphaB crystallin [5]. Chaperone-like activity was observed using a synthetic peptide in assays for the aggregation of oxidized gamma-crystallin or alcohol dehydrogenase (ADH)[6]. At the time, it was hypothesized that each category of target protein interacted with an independent site on alpha crystallin, which was the basis for the experiments using the pin arrays to determine the sequence of each binding site.
The results of the pin arrays were consistent with the Sharma results but the pin arrays determined that sequences as small as four amino acids in the core domain had bioactivity (figure 1). When the interactive sequences for different target proteins were mapped to the surface of alphaB crystallin, the surface exposed regions were interconnected. In addition, the side-chain interactions with the destabilized, unfolding target proteins were through weak noncovalent protein-protein interactions. Recent reports confirmed the interactive structure of the functional core domain of alphaB crystallin and the MAC interactive sites using X-ray diffraction and solution NMR [7, 8]. There is little doubt about the importance of the original findings by the Sharma laboratory for understanding the functional elements in alpha crystallins which continue to be confirmed using advanced technology (summarized in another review article in this issue).
STRUCTURE
The full length sequence of human alphaB crystallin is 175 amino acids and it contains the characteristic “alpha crystallin core domain” of approximately 85 amino acids in the C-terminal region [8, 9]. Similar to all sHsp there are C- and N- terminal extensions in human alphaB crystallin. The earliest successful X-ray diffraction studies of sHsp were conducted using crystals of sHsp16.5 from the archaeal Methanococcus jannaschii [10], and Triticum aestivum (wheat) sHsp16.9 [11]. In both molecules, the prominent structural motif was the alpha crystallin core domain consisting of anti-parallel beta strands in beta sheets that were organized in a beta-sandwich resembling an immunoglobulin fold. The results of X-ray diffraction confirmed previous circular dichroism studies and demonstrated that the lens crystallins were predominantly beta strands similar to all sHsp, even when the sequence identity was minimal [12, 13]. Dimerization was the basis for the self-assembly of larger oligomers involving the N- and C-terminal extensions, which are similar only in closely related sHsp [9, 14]. The C-terminal extension of human alphaB crystallin included an I-X-I motif which is conserved in most sHsp. Diffraction data for the full length human alphaB crystallin has not yet been obtained. Instead of forming crystals, concentrated solutions of human alpha crystallin favor polydisperse, globular oligomers and X-ray diffraction of human alphaB crystallin was possible only by removal of the N- and C-sequence extensions [9, 15, 16]. Computer modeling and energy minimization resulted in an alphaB structure containing the characteristic beta sandwich and immunoglobulin – like fold that was fit to sHsp 16.5 and sHsp 16.9 with an excellent Cα RMSD of= 2.06 angstroms [1]. In the absence of a detailed atomic structure of the full length human alphaB crystallin molecule, there continues to be uncertainty about the exact configuration of the N- and C- termini which are characteristically dynamic, often disordered d, and contribute to the multifunctional structure and activity of alphaB crystallin [9, 14]. A full length model for alphaB crystallin based on solid-state NMR, small angle X-ray scattering and electron microscopy confirmed the dynamic nature of the human alphaB crystallin in the formation of multimeric oligomers[17].
ALPHA CRYSTALLIN as a MODEL for PROTEIN AGGREGATION
Protein-protein interactions are fundamental to the self-assembly of the cytoskeleton, dimerization of surface receptors, and formation of amyloid aggregates in pathology, mechanisms known to be modulated by alphaB crystallin [2, 18–20]. Historically, the earliest studies of the protein-protein interactions involving alpha crystallin were in the formation of light scattering High Molecular Weight aggregates (HMW) in lens opacification (figures 2 & 3). An increase in light scattering and lens opacity correlated with a progressive increase in water-insoluble protein and cross-linked HMW aggregates [21, 22] where protein deamidation [22]and disulfide crosslinks between crystallins increased. Alpha crystallin was a major component of HMW aggregates which appeared to account for increased light scattering in cataract [21, 23, 24]. As a result there was an emphasis on covalent –S-S- interactions between alpha crystallin and other crystallins as the cause of light scattering resulting from protein destabilization, unfolding and aggregation in aging human lenses. These results were based on the analysis of mature cataracts. In fact, covalent disulfide bonds are unnecessary for the formation of HMW and may be important in the late stage of cataract formation. A few years later, the realization that mammalian alpha crystallin was related to sHsp in drosophila [25] inspired an experimental demonstration of the protective effects of alpha crystallin against the aggregation of unfolding proteins [26]. As a result of those experiments, the historic emphasis on alpha crystallin as a cause of cataract had to be reconsidered. Then a new hypothesis considered alpha crystallin to be protective against protein aggregation and cataract, rather than causative. The presence of alphaB crystallin in cells and tissues involved with disorders of aging, including cardiovascular and neurodegenerative disease, raised the possibility that alphaB crystallin might be protective against aggregation and fibrillation of amyloidogenic proteins in neurodegeneration, not just aggregation of lens crystallins in aging cataract. It needs to be noted that the protective activity of alphaB crystallin does not require –SH or –S-S- interactions.
Pin arrays were then used to evaluate the potential interactive sequences in human alphaB crystallin involved in recognition and inhibition of protein fibrillation of the amyloid forming proteins, Abeta1–42, alpha-synuclein, transthyretin, and beta2-microglobulin [27]. In an extensive series of experiments, the pin arrays identified five sequences in human alphaB crystallin that modulated fibrillation measured by the ThioflavinT fluorescence assays, often used to measure self-assembly of amyloid fibrils. Enhanced Thioflavin T fluorescence at 486 nm can be used to quantify the self-assembly of amyloid fibrils. The peptides derived from human alphaB crystallin were inhibitors of amyloid assembly. Unexpectedly, systematic truncation of these bioactive peptides of alphaB crystallin resulted in peptide fragments that were effective in assays of fibril formation. While longer sequences could simulate the effects of the full length protein, these studies determined that sequences as short as four amino acids (molecular weight <500) were bioactive and modulated fibrillation in the ThioflavinT assays (figure 4)[27].
Once we identified the sequences for the sites where the bioactive peptides interacted with the amyloid proteins, we used computer docking programs to model the interactions. The modeling showed that interactions occurred at the sequences in transthyretin or beta2-microglobulin known to form amyloid. While X-ray diffraction structures of the amyloidogenic sequences were unavailable for Abeta1–42 and alpha-synuclein, there are similarities in the primary sequences responsible for amyloid formation. These sequences were identified as interactive sites for the bioactive peptides derived from alphaB crystallin using molecular modeling. These findings are supported by recent structural studies that determined the capability of the alphaB crystallin core domain to prevent amyloid fibrillation and associated toxicity [7]. Recent NMR analysis of the interface between the mini-alpha crystallin derived from the beta 3 –beta 4 strands in the core of alpha A crystallin, identified residues responsible for binding between the target protein human gamma D crystallin (HGD) and an interactive site on the mini-alpha crystallin[8]. Apparent Kd values in the range of only 200–700 micromolar characterized weak reversible binding which preceded unfolding of the target HGD protein and formation of a stable, irreversible complex where much stronger Kd values were needed. While the affinities were not determined, the structural studies characterized weak interactive sites involved in dimer formation in the core alphaB crystallin domain [7]. These results suggested that surface exposed side chains of the interactive sequences can be influenced by subtle cellular changes in pH, ionic strength or osmolarity under physiological conditions to modify their binding to target proteins. This is an area that needs further study.
FUNCTION of the ALPHA CRYSTALLIN SEQUENCES
After the Sharma laboratory determined that a 19-residue peptide fragment in human alpha A crystallin had functional activity, it was only a matter of using new experimental methods to characterize the activity of component peptides and their involvement in the functional mechanism. Pin array studies of alphaB crystallin identified as many as seven interactive sequences in human alphaB crystallin involved in the interactions between human alphaB crystallin and target proteins. Five of the sequences were involved in interactions between human alphaB crystallin and amyloid proteins. On the basis of the pin array results, synthetic fragments as small as four amino acids in length were used in quantitative studies of bioactivity against fibrillation of amyloidogenic proteins (figures 1 and 4). When the surface exposed side chains of the bioactive peptides were mapped to 3-dimensional computer models of alphaB crystallin, the overlap of the bioactive surfaces appeared as a network. Exactly how a network of interactive sequences contributes to the functional mechanism of human alphaB crystallin remains to be determined. In theory, a network may be more sensitive to one energetic state than another, emphasizing the importance of measuring exact affinities for binding structurally diverse, dynamic sites in destabilized proteins. The pin array results combined with surface mapping generated new knowledge for the basis of protein -protein interactions and selective, rather than specific, interactions between alphaB crystallin and its targets. The possibility that alphaB crystallin need not bind directly to a functional target but instead binds indirectly to regulatory sites where modification can occur by phosphorylation, deamidation or proteolysis, needs to be considered. The results summarized in this article suggest that no individual amino acid sequence is required for protective activity and that the bioactivity of any sequence varies with the target protein. Whether or not a protective peptide adapts to any secondary structure or the activity depends on interactions with hydrophobic patches was not determined. Clearly, identification of the earliest initiating events of self-assembly will benefit our understanding of the alphaB crystallin mechanism.
These results raised new hypotheses about the mechanism(s) for the protective action of human alphaB crystallin and its selective binding with diverse target proteins. Exactly how the alphaB crystallin regulated the interactions with target proteins remains to be determined, but preliminary results are consistent with a mechanism where dynamic interactive surfaces on alphaB crystallin can recognize multiple interactive domains exposed on the surface of diverse targets from crystallins to cytoskeletal elements to amyloid proteins. The interactive domains for each target protein are not separated on the surface of alphaB crystallin. Instead the interactive domains for different categories of target proteins overlap. It should be noted that the interactive sequences on alphaB crystallin are used in normal dynamic self assembly of alpha crystallins which do not require disulfide bonds [1,2]. There remains much to discover about the biological importance of the interactive sequences in normal cell function and in protection against modified abnormal proteins. Quantification of the nature of the interactions, the affinities between interactive sites, and the effects of 3D surface topology on alphaB crystallin function, are needed to understand the mechanism of alphaB crystallin activity in cells.
Taken together the results using synthetic peptides (figure 4) based on interactive sequences in human alphaB crystallin and identified using pin arrays (figure 1), were consistent with the hypothesis that human alphaB crystallin, the archetype for all sHsp, is multifunctional because it has multiple surface-exposed, interactive sequences. While not specific for a single category of proteins, most targets for alphaB crystallin appeared to be self-assembling proteins, both normal and abnormal. AlphaB crystallin has target protein preferences. For example, lens crystallins appeared to be the favored targets for human alphaB crystallin. While the alpha crystallins self-assemble, there were also preferential interactions with the beta/gamma crystallins present at high concentrations in lens cells throughout the lifetime of an animal. Numerous studies support the hypothesis that alphaB crystallin protects against endogenous protein destabilization leading to the slow progressive unfolding and self-assembly of HMW aggregates during aging and cataract formation. The inhibition of aggregation by many of the peptides corresponded to the inhibition of aggregation by the full length protein. In lens, crystallins are the highest concentration of the cytoplasmic proteins by a factor of nearly ten. After crystallins, the predominate proteins in lens cells are those of the cytoskeleton including fibers, filaments and microtubules. The cytoskeleton is important in cellular restructuring during the proliferation, migration and elongation of lens cells to form a highly symmetric, refractive, transparent optical element in the eye (figures 2&3) [28, 29]. Within each cell, the cytoskeleton provides a scaffold for establishing short range transparent order in the concentrated crystallins [30]. It is well established that alphaB crystallin (and other sHsp) can interact with and regulate self-assembly of cytoskeletal proteins in a variety differentiating cells throughout the body and in cell culture [18, 20, 31, 32].
Having determined that several small sequences on the surface of alphaB crystallin have the ability to interact with amyloid forming proteins, we hypothesized that common physical properties were responsible for modification of potential interactions with unfolding target proteins. Peptide modifiers of protein-protein interactions needed to be studied in individual cells or tissues in model organisms where fundamental interactions found in the earliest phylogenies can be evaluated. The same protein-protein interactions and interactive surfaces on molecules in human cells were probably important in the simplest unicellular organisms even where there was little sequence identity. While the proteins and the sequences may have evolved, it can be expected that fundamental properties of the subtle interactions between proteins remain unchanged.
RECOGNITION of UNSTABLE TARGET PROTEINS
Given the diversity of the interactive sequences on the surface of human alphaB crystallin and the variety of self-assembling target proteins including crystallins, cytoskeletal proteins, and amyloid proteins, a series of experiments were conducted to evaluate the sensitivity of human alphaB crystallin to the initiation of protein self-assembly [33]. Hemoglobin S (HbS), sickle cell hemoglobin, was selected as the experimental model because the filament assembly of HbS results from a glu-6-val mutation in normal HbA, and it may be the most thoroughly studied self-assembly pathology in biology. Numerous structural and biophysical reports on all aspects of the HbS assembly have been published [34, 35]. Interactions were not expected between human alphaB crystallin and HbS or HbA in vivo or in vitro. Using a thermal unfolding assay, the experiments determined that alphaB crystallin bound 6% more HbS than native HbA at room temperature and 25% more at 37°C [33]. It was of special interest that alphaB crystallin distinguished native HbA from HbS under near physiological conditions. Continued destabilization with time or increasing temperature increased the interaction between alphaB crystallin and both HbS or HbA though the interactions with HbS were stronger than HbA. AlphaB crystallin appeared to be more sensitive than ultra violet circular dichroism (UVCD) to the earliest stages of protein unfolding in HbS. In terms of surface interactions, the alphaB crystallin recognized the difference between HbA and HbS while the difference in hydrophobic surface area was less than one percent. The molecular basis for the recognition of destabilized proteins is an area that needs much more attention. Continued study of the interactive domains in HbA and HbS for alphaB crystallin during initiation of unfolding is expected to provide new insight into mechanisms of alphaB crystallin function.
ENDOGENOUS PROTECTIVE PEPTIDES
Separate studies of alpha crystallin purified from different layers of lenses found that the oldest cells in the core of a lens contained modified alpha crystallins and crystallin fragments that may be more than 20% of the protein [36, 37]. While it is expected that the increase in fragments could cause aggregation and increased light scattering, the protective effects of fragments of alpha crystallin may maintain transparency. Mechanistically it is understandable that molecular aging of the proteins can result in aggregation in the absence of intact alphaB crystallin or protective fragments. An accumulation of crystallins altered by post-translational modification or mutated by genetic factors favors the disruption of transparent short range order by the formation of HMW aggregates. However, endogenous production of protective peptides could help protect against self-assembly of light scattering aggregates with aging [37].
From a phylogenetic perspective, alphaB crystallin homologs are endogenous to nearly all cells throughout the plant and animal kingdoms. As a predominant class of proteins in the lens, alpha crystallin was readily characterized in early biochemical studies. But alphaB crystallin is constitutively expressed in a diverse number of cells as well, indicating the potential importance of alphaB crystallin in a variety of molecular systems where self-assembly is important for differentiation, migration and protection against cell stress. A number of sHsp share common functions as well as a common structure with alphaB crystallin. The similarities in protective sequences can account for the shared functions. While the similar functional sequences are important, the differences in the surface exposure of interactive sequences appear to account for the diversity in the selectivity of the sHsp. The phenotype for the first functional sHsp may have appeared early in phylogeny. Systematic analysis of the surface exposure of the interactive domains across phyla could provide new insights into the fundamental basis for the protective mechanism against amyloid formation and aggregation diseases and reveal novel therapeutic targets for regulation of the self-assembly of amyloid proteins.
In mammals and zebra fish, the lens is an excellent model system for studies of alphaB crystallin function because the lens is a transparent optical element that transmits and focuses light [29]. Transparency and refraction result from the establishment of short range order (Fig 2 & 3) in very high cellular concentrations of cytoplasmic proteins known as alpha and beta/gamma crystallin [38–40]. The cytoskeleton participates in the establishment of short range order[30] possibly through production of a scaffold involving interactions between cytoskeletal elements and alphaB crystallin, as expression of beta/gamma crystallins increases during cell differentiation [41–43]. Careful and subtle regulation of the interactions between the beta/gamma crystallins and the cytoskeleton can result in a transparent structure without aggregation [44–47] during the elongation and migration of lens fibers during differentiation into symmetric layers of varying refractive power.
SUMMARY
In humans, alphaB crystallin, sHspB5, is a multifunctional protein containing the alpha crystallin core domain, the fundamental beta-sandwich found in most small heat shock proteins, sHsp. The beta-strand structure is represented in sHsp across all phyla in both the plant and animal kingdoms, supporting the hypothesis that sHsp are critical for the response of cells to cell stress including cell differentiation and cell aging. Mechanisms for the self-assembly of protein complexes are the basis for cytoskeletal assembly that is necessary for normal cell function and for the pathological amyloid aggregates that are common in cataract, sickle cell disease, and neurodegeneration. Our hypothesis is that the self-assembly mechanisms critical for filament, fibril, and tubule formation in normal cells share common dynamics with the formation of amyloid and aggregate complexes in multifactorial aging diseases. In human alphaB crystallin, there is no single binding site for target proteins. Instead, multiple interactive sequences that map to the exposed surface of the molecule, regulate the function of αB crystallin in diverse biological self-assembly systems under normal or abnormal conditions (figure 5).
BBA HIGHLIGHTS.
The interactive sequences in human alphaB crystallin are reviewed.
Multifunctional interactive sequences were identified
The interactive sequences as small as four amino acids have protective activity independent of the intact alphaB crystallin.
ACKNOWLEGEMENTS
Funding from grant # EY04542 from N.E.I. is gratefully acknowledged. Technical assistance from J.M. Clark is appreciated.
Footnotes
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