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. 2019 Oct 3;14(10):e0222532. doi: 10.1371/journal.pone.0222532

Movement and habitat selection of the western spadefoot (Spea hammondii) in southern California

Katherine L Baumberger 1,¤a,*, M V Eitzel 2,¤b, Matthew E Kirby 3, Michael H Horn 4
Editor: William David Halliday5
PMCID: PMC6776459  PMID: 31581232

Abstract

Agricultural activity, urban development and habitat alteration have caused the disappearance of the western spadefoot (Spea hammondii) from 80% of its geographic range in southern California. Despite the western spadefoot’s continuing decline, little research has been conducted on its natural history. The home range of adult spadefoots is unknown, and their use of upland habitat is poorly understood. Both factors are important for the long-term conservation of the species because adult spadefoots spend the majority of their lives away from breeding pools in self-excavated burrows. Between January 2012 and January 2013, we surgically implanted radio transmitters in 15 spadefoots at two locations and recorded their movements and habitat use. The mean distance moved between burrow locations was 18 m (SD ± 24.1 m, range1–204 m). The mean distance of burrows from the breeding pools was 40 m (SD ± 37.42 m, range 1–262 m). Rain was a significant predictor of spadefoot movement, with more rain predicting higher probability of movement and larger distances moved. At remote sensing scale (1 m) spadefoots selected grassland habitat for their burrow locations. At the microsite scale (< 1 m) spadefoots strongly selected duff over grass or shrub cover. Spadefoots burrowed in friable, sandy/loam soil with significantly less clay than random pseudoabsence points. This research enhances our understanding of a little-studied species and will contribute to the development of effective management plans for the western spadefoot.

Introduction

Habitat loss is one of the main causes of amphibian decline throughout the world [14]. Because of this loss, amphibian conservation has historically been focused on the preservation or restoration of aquatic habitats [5], and on the upland habitat use of adult amphibians [67]. Specifically, attention has been given to determining the minimum buffer around a breeding pool required to conserve the adult population [811]. For a wide variety of amphibian species, the mean core terrestrial habitat ranges between 205–368 m from the edge of aquatic habitat [12]. Conservation plans benefit strongly from specific information about particular species of concern, and determining adequate terrestrial buffers for these species is key to ensuring the viability of their populations [5]. Delineating the upland habitat use of fossorial anurans is essential given that they spend the majority of their lives away from breeding pools in terrestrial burrows. Defining a required buffer around the pool is particularly important in conservation planning for these species; distances from breeding pools at which fossorial anurans aestivate can be as large as 370 m to 2,350 m, e.g. for the Great Basin spadefoot (S. intermontane) and eastern spadefoot (S. holbrookii) [1315]. In addition to the size of the buffer, restoration planning requires information regarding types of land cover preferred by the species of concern.

We examined use of upland habitat by the western spadefoot (Spea hammondii), a burrowing anuran that has been extirpated from 80% of its range in southern California because of agricultural expansion and urban development [1617]. This extensive habitat loss has led to the western spadefoot’s listing as a California Species of Special Concern [18], and the species is under review for listing as Endangered or Threatened under the Endangered Species Act [19]. The western spadefoot is endemic to California and historically inhabited lowlands such as river floodplains and washes in the Central Valley and along the coast from central California to northwestern Baja California [17,20]. Adult spadefoots spend most of their time underground and emerge primarily on rainy nights to feed and to breed in vernal pools [2122]. The home range size of adult western spadefoots is unknown, and the maximum distance moved from breeding pools has not been established [18,23].

The objective of this baseline study was to confirm the movement ecology and determine the habitat use of spadefoots at two sites in Orange County, California. We used radio-telemetry to monitor 15 spadefoots to establish a baseline understanding of four aspects of their habitat use patterns: 1) basic movement ecology, including home range size and distances moved away from breeding pools; 2) identification of variables predicting movement; 3) vegetation characteristics at burrow locations (from remote sensing classification and from vegetation surveys of the 1 x 1 m area encompassing the spadefoot’s position); and 4) soil characteristics of aestivation locations (defined as a residence exceeding three weeks in the same burrow location). We were thus able to contribute to basic understanding of the movement and habitat selection of the western spadefoot which can support future studies and management planning.

Materials and methods

Ethics statement

This study was conducted under California Department of Fish and Wildlife permit SC-07437 and approved by the Institutional Animal Care and Use Committee at California State University, Fullerton (Protocol No. 11-R-05). Animal handling followed the Herpetological Animal Care and Use Committee of the American Society of Ichthyologists and Herpetologists guidelines [24]. Animals were anaesthetized via immersion in MS-222 (0.4g dissolved in 500ml of water) at a veterinary clinic, and every effort was made to minimize suffering.

Study area

This study was conducted in two protected parks, Crystal Cove State Park (UTM 11S 423775 E 3714365) and the Laguna Coast Wilderness Park (UTM 11S 429081 E3714390) in Orange County, California. Together, these two areas form the largest remaining contiguous parcels of coastal sage scrub habitat in Orange County. These sites are also home to some of the few remaining vernal pools in the area. The site at Crystal Cove State Park is in a campground with greater potential for human nighttime activity. The site in the Laguna Coast Wilderness is a short drainage ditch along a popular hiking trail. Both areas were closed for several days following rain events to prevent visitors from damaging the wet trails. These closures reduced the impact of human interference on spadefoot movement by limiting the usual heavy human traffic at the study sites. All necessary permits were obtained from both Crystal Cove State Park and Orange County Parks, and our study complied with all relevant regulations.

The area of the Crystal Cove State Park breeding pool was approximately 38 m2, while the Laguna Coast Wilderness pool was 3 m2. However, during the 2011–2012 breeding season the Crystal Cove pool did not hold water. The Laguna Coast pool only held water for a week. The total precipitation during our study period (20.4 cm) was well below the 60-year average for the area (mean = 32.7 cm, SD ± 17.1). The average temperature for January through December 2012 (mean = 16.7° C, SD ± 5.5) was similar to the 60-year average (mean = 16.2° C, SD ± 1.29) [25].

Radio telemetry

During the potential breeding period, between the end of January and the end of April 2012 [16], we opportunistically captured a total of 15 spadefoots (see S1 Table for capture dates). Seven of the 15 animals were caught in Crystal Cove State Park: these spadefoots were most likely on the surface foraging because the breeding pool did not fill. The eight animals caught in the Laguna Coast Wilderness were found in or near the breeding pond while water was present. Only three female spadefoots were captured, all at Crystal Cove State Park. The animals were sexed in the field based on the presence/absence of nuptial pads [17]. The sexing was confirmed during surgery, as all three females had eggs present. We surgically implanted small radio transmitters (Model A2455, Advanced Telemetry Systems, Isanti, MN) into the coelomic cavities of each animal using the methods of Timm et al. [13]. Surgical implantation was deemed to be safer and more reliable for a fossorial species because external attachment of transmitters can cause abrasions and entanglement [24,26]. The transmitters weighed between 1.1 g and 1.2 g, putting them at less than 5% of the spadefoot’s weight (mean 32 g ± 5, range 26–40 g) (Table 1) [27]. We excavated the spadefoots from their burrows one time during the study to perform a welfare check approximately a week after their surgeries, and no ill effects (e.g. redness/swelling at incision site, weight loss) were observed.

Table 1. Summary of spadefoot characteristics and movement.

Number of spadefoot 15 Total 3 Female 12 Male
  Mean SD Range
Snout-vent length (mm) 62 5 54–70
Mass (g) 32 5 26–40
Capture date 2012/03/20 39 days 2012/01/21–2012/04/26
Last located date 2012/12/18 32 days 2012/10/13–2013/01/21
Number of locations 36 14 22–59
Number of burrows used 13 9 4–35
Maximum distance from pool (m) 69 60 16–262
Home range size (MCP m2) 1340 1690 25–5620
Mean distance between burrows (m) 18 12 9–57
Depth of burrow from welfare check (m) 0.1 0.05 0.01–0.18

We tracked the animals with a three-element Yagi antenna and a portable receiver (model TR-4, Telonics, Mesa, AZ) two times a week from January to June 2012. From July through October 2012, we monitored the animals’ aestivation locations every other week. From October 2012 through January 2013, we monitored the animals once a week until the batteries gave out on the transmitters. We recorded burrow locations with a hand-held GPS receiver (model Rino 520, Garmin International, Inc., Olathe, KS) and then uploaded the points to a Geographic Information System (GIS) (ArcGIS 10 and 10.1, ESRI, Redlands, CA).

Vegetation characteristics

To document vegetation characteristics at burrow locations, we placed a 1 m x 1 m Polyvinyl Chloride (PVC) square centered at the burrow opening. Within the square, we visually determined percent cover of five vegetation classes: grass, forbs, shrubs, leaf litter (recently fallen leaves), and duff (dead and decomposing vegetation from previous seasons) [28] to the nearest 5 percent. We also recorded topographic slope and aspect to the nearest degree using a hand-held compass with a built-in clinometer (Brunton, Riverton, WY). See Table 2 for a summary of these variables. In October 2012, we took the same measurements at 102 random pseudoabsence locations generated with ArcGIS and Geospatial Modeling Environment 0.7.2.1 (GME) [29]. The points were within a 300 m radius of the breeding pool (so as to encompass the maximum single movement of our tracked spadefoots), and at least 1 m away from a known spadefoot burrow [30].Though there is some temporal mismatch between these pseudoabsence points and the known spadefoot points, we carefully distinguished between dead grasses and forbs from 2012 and duff from 2011 or earlier. The points were stratified proportionally between the two habitat types present at our sites, “grassland” and “shrub,” as classified from heads-up digitization of a sub-meter spatial resolution satellite image (ESRI base map, sources: ESRI, DigitalGlobe, GeoEye, i-cubed, USDA, USGS, AEX, Getmapping, Aerogrid, IGN, IGP, swisstopo, and the GIS User Community). We chose to stratify proportionally between these two habitat types because we did not have previous knowledge regarding which type the spadefoots would select and wanted to ensure adequate representation of both habitat types.

Table 2. Summary of characteristics at burrow locations and rainfall data for the winter of 2011–2012.

  Mean SD Range
Percent sand 52 15 29–82
Percent silt 38 11 13–53
Percent clay 10 4.6 3.8–18
Total organic matter (percent) 4.6 1.2 2.4–7.1
Topographic slope (percent) 6 6.5 0–30
Aspect: northness -0.22 0.72 -1.0–1.0
Aspect: eastness 0.02 0.66 -1.0–1.0
Percent grass cover 25 28 0–100
Percent shrub cover 24 35 0–100
Percent leaf litter cover 15 33 0–100
Percent forb cover 15 20 0–100
Percent duff cover 40 36 0–100
Duff height (cm) 2.5 3 0–28
Vegetation height (cm) 45 36 0–150
Locations with other animal burrows 72/167 NA NA
Number of days with rainfall 29 NA NA
Amount of rainfall (cm) 0.41 0.89 0–4.5

Soil characteristics

We followed the methods of Kirby et al. [31] to measure the percent total organic matter, percent silt, percent clay, and percent sand of aestivation locations and pseudoabscence points. We used a core sampler to collect soil from 11 spadefoot burrows (this represents all 15 spadefoot aestivation burrows because several spadefoots aestivated within 1 m of each other) and 10 random points stratified spatially from our list of random points described above. The cores averaged 21.43 cm in length (range = 15–29 cm). This depth was consistent with the depth of burrows observed during welfare checks of the tracked animals (see Table 1). Soil cores were subsampled every 2 cm for compositional analysis. These analyses included determining grain size and using the loss-on-ignition method to obtain percent total organic matter [32]. Grain-size was measured on a Malvern Mastersizer 2000 laser-diffraction grain-size analyzer coupled to a Hydro 2000G. All data were reported as percent by volume. Grain-size data were classified using Wentworth’s [33] classification, dividing clay at < 3.9 μm, silt at 3.9–62.5 μm, and sand at 62.5–2000 μm [34]. We averaged soil characteristics for the entire length of each core because spadefoots presumably moved through the entire profile to reach final placement in their burrows.

Data analysis

We used ArcGIS and GME to estimate home range as a 95% minimum convex polygon (MCP) for each spadefoot and for each site. We estimated the utilization distribution (UD) via the a-local convex hull (a-LoCoH) method [3536] using the rhr package [37] in R [38]. The outputs from the UD analysis capture use of space at each site, rather than individual home ranges [36]. We pooled data by site because of the low number of locations observed.

We used R for all statistical models that follow. Unless otherwise noted, we calculated p-values using likelihood ratio (LR) tests, comparing a full model including all variables with a reduced model eliminating the variable of interest. LR tests are more conservative than t-tests and are less sensitive to unbalanced designs [39]. Where models included only fixed effects, we used “glm” to fit models for LR tests and to obtain parameter estimates. Where models included a random effect (movement models), we used glmmADMB [40] to fit the generalized linear mixed models.

To evaluate the spadefoots’ selection of burrowing location characteristics, we analyzed two scales of habitat classification: site scale, based on visual classification of remotely-sensed imagery; and microsite scale, based on the vegetation quadrats. At the site scale, we conducted a Chi-squared test of independence between spadefoot presence/pseudoabsence and vegetation type (grassland versus shrub). At the microsite scale, we fit four separate binomial generalized linear models for spadefoot presence or pseudoabsence as predicted by: 1) each of the five vegetation classes, 2) site, vegetation height, duff depth, 3) slope and aspect (transformed into ‘northness’ = cos (aspect) and ‘eastness’ = sin (aspect)), and 4) the effect of other animal burrows (e.g. gopher and ground squirrel) on spadefoot presence. The models for these sets of burrow location characteristics were separate because the sample sizes did not match (sample sizes for each set of models are listed in Results tables). Note that we did test the study site (Laguna Coast Wilderness versus Crystal Cove State Park) in these models, but as it was never significant, it was not included in the results tables. This outcome is unsurprising as we designed the study for equal numbers of spadefoots at each site.

To evaluate the spadefoot's soil preferences at aestivation locations, we used binomial generalized linear models for spadefoot presence or pseudoabsence predicted by soil characteristics: soil texture (percent sand, silt, and clay) and total organic matter. At our sites, soil composition was confined to a narrow combination of the three textures, and in addition to the fact that percent sand, percent silt, and percent clay sum to 100%, these percentages correlated strongly (sand/clay: -0.90, sand/silt: -0.98, silt/clay: 0.80). Therefore we conducted a principal components analysis (using the “prcomp” function in R), which gave a first component reflecting the greatest variation in soil composition in our sites (98%), and a second component orthogonal to the first which reflected the second greatest variation in soil characteristics (2%). The third component reflected the degree to which the three textures did not sum to 100 percent, i.e. the analysis error. As this component accounted for very little variation (0.004%), we did not include it in the binomial model for spadefoot presence/pseudoabsence. Because principal components can be difficult to interpret, we also report the parameters for a binomial model with presence/pseudoabsence predicted by silt and clay (the least correlated of the three textures). We created a similar generalized linear model for spadefoot presence or pseudoabsence predicted by total organic matter. Organic matter and soil texture variables were tested separately because of differing sample sizes.

To determine drivers of spadefoot movement, we used a “hurdle” model [41] in which we first modeled the probability of movement (binomial generalized linear model) and then separately modeled the distances moved (gamma generalized linear model with a log link). Predictors in both models included rainfall in centimeters [42], sex of the spadefoot, phase of the moon [43], and study site (all as fixed effects), and individual spadefoot as a random effect. These models were fit using glmmADMB. Note that the sampling effort at the two sites was not equal, as the spadefoots were tagged much earlier at Laguna Coast Wilderness and therefore the number of possible movements was higher. This difference in sampling effort was less important for the habitat models, but for the movement models it was critical that we control for site.

Results

The transmitters lasted an average of 272 days (range 224–335 days). During that time, we fixed the location of the spadefoot burrows 532 times, representing 195 unique spadefoot burrows. The maximum distance the spadefoots were found from the pools ranged from 16 to 262 m (Table 1, S1 Table), with a mean maximum distance of 69 m ± 61.48. The spadefoots used a mean of 13 burrows (SD ± 8.5), and the mean distance between burrow locations was 18 m (SD ± 24.2). They used 4–31 unique burrow sites (mean 11 ± 7.8) during the study. Nine of the 15 spadefoots (60%) reused one or more burrows at least once after moving to a different burrow. Outside of their aestivation period, the spadefoots shifted their burrow location an average of every 8 ± 7 days, and 147 of 194 (~76%) movements between burrows were ≤ 25 m. Spadefoots began aestivating in May and June 2012. The spadefoots remained in their aestivation burrows 125–220 days (mean 157 days ± 24.5), with the last spadefoot moving to a new burrow from its aestivation site on December 21, 2012. The 95% MCP home range size for Laguna Coast Wilderness was 8,242 m2, larger than for Crystal Cove State Park, which had a 95% MCP size of 6,285 m2. The UD for the Laguna Coast Wilderness was also larger with an area of 1115 m2. The UD for Crystal Cove was 599 m2, roughly half (53%) of the UD of Laguna Coast Wilderness (Fig 1). All the spadefoots were presumed to be alive at the end of the study, based on movement before transmitter failure. We observed no predation events or injuries. We did not remove the transmitters because of the potential negative consequences of removing transmitters that had been encapsulated by connective tissue [44].

Fig 1. Home range and utilization distribution of spadefoots.

Fig 1

Home ranges (black outline) represented as 95% minimum convex polygons, and utilization distribution (yellow polygons) of adult western spadefoots in Orange County, California, USA, in 2012 for Laguna Coast Wilderness (left) and Crystal Cove State Park (right). Blue solid polygons show the breeding pool at each site.

Drivers of movement

Although spadefoots did move when no rain was present (Fig 2), rain significantly predicted spadefoot movement, as did the animal random effect (Table 3). For an average animal, the model predicts a 46 percent chance the spadefoot will move with no rainfall (not significantly different than 50 percent), while at maximum rainfall (4.5 cm) the model predicts an 87 percent chance that the animal will move. We also found significantly more movement at Laguna Coast Wilderness, consistent with that site’s longer sampling period. Number of meters moved away from or towards the breeding pool was predicted by rain in cm and by the animal random effect. With no rainfall, the model predicts that the average animal will move 21 m, while at maximum rainfall the model predicts that the average animal will move 163 m.

Fig 2. Spadefoot movement away from breeding pools vs. rainfall.

Fig 2

Spadefoot movement away from breeding pools over the course of the study (January 2012 through January 2013) at A) Laguna Coast Wilderness and B) Crystal Cove State Park. Daily rainfall in Orange County, USA, is displayed in gray bars in the background, and each line represents an individual spadefoot's distance from the breeding pool throughout the year. Most individuals remained within 100 m radial distance from the breeding pool, while one individual went much farther. Movements occurred outside rainfall events, and movement did not always occur during rainfall events, but statistically the relationship is significant (see Table 3). Individuals were tracked for a shorter time period at Crystal Cove State Park.

Table 3. Model untransformed parameter estimates, standard errors, and statistical significance.

Model N Parameter Estimate SE1 P-value
Burrows: site level2 297 Shrub vs. Grassland 36.2, df = 1 NA <0.001
Burrows: vegetation structure 271 Vegetation height NS NS NS
    Duff height NS NS NS
Burrows: vegetation cover 300 Percent duff 0.02 0.006 0.002
    Percent shrubs -0.01 0.006 0.02
    Percent forbs NS NS NS
    Percent grass -0.02 0.007 0.02
    Percent leaf litter NS NS NS
    Percent open ground NS NS NS
    Percent tree NS NS NS
Burrows: physiography 285 Slope -0.2 0.03 <0.001
    Aspect: northness -0.55 0.22 <0.001
    Aspect: eastness 0.79 0.24 0.01
Burrows: other burrow 167 In other animal burrows 1.42 0.35 <0.001
Aestivation: soil texture 20 Principal component 1 NS NS NS
    Principal component 2 -2.79 1.55 0.03
    Percent clay3 -0.46 0.25 0.03
    Percent silt3 0.17 0.1 0.05
Aestivation: organic matter 19 Total organic matter NS NS NS
Movement: yes/no 532 Rainfall (cm) 0.46 0.11 < 0.001
    Mean site difference -0.81 0.35 0.02
    Phase of moon NS NS NS
    Sex of spadefoot NS NS NS
    Animal random effect 0.33 NA 0.03
Movement: distance (m) 181 Rainfall (cm) 0.13 0.06 0.02
    Mean site difference NS NS NS
    Phase of moon NS NS NS
    Sex of spadefoot NS NS NS
    Animal random effect 0.41 NA < 0.001

1Standard errors for random effect variance components are not symmetrical and not included.

2Chi-squared test of independence.

3Separate model from principal components analysis.

Characteristics of burrow locations

Duff depth and vegetation height were not significant predictors of spadefoot presence (Table 3). At the site scale (from the imagery-classified vegetation types), spadefoots strongly selected for grassland rather than shrubs (Fig 3F, Table 3). At the microsite scale, spadefoot strongly selected duff over grass or shrub cover (Fig 3A–3E): the model predicts that a spadefoot encountering a site composed entirely of grass has probability 0.30 of choosing to burrow there (significantly less than 0.50); if the site were composed entirely of shrub, a probability 0.36 of choosing to burrow there (significantly less than 0.50); and if it were composed entirely of duff, a probability 0.94 of choosing to burrow (significantly more than 0.50). No other cover types were significant, including open ground (Table 3).

Fig 3. Habitat characteristics of spadefoot burrow locations.

Fig 3

Habitat characteristics within 1 m2 of spadefoot burrow locations (P) and pseudoabsence (PA) locations in Orange County, California, USA, in 2012. Percent cover of A) duff, B) grass, C) shrubs, D) leaf litter, and E) forbs, in addition to F) the classification from high spatial resolution imagery of each presence or pseudoabsence point as “grass” or “shrub.” (Two other cover classes are not shown: tree cover, which is rare at our sites, and open ground, which is the complement to grass, leaf litter, and duff: they sum to 100%).

The model predicts that spadefoots encountering sites without burrows created by other animals (e.g. gophers and ground squirrels) have a probability 0.43 of choosing to burrow there (not significantly different from 0.50), whereas a spadefoot encountering a site with a pre-existing burrow has probability 0.76 of choosing to burrow there (Table 3). Spadefoots selected burrows on flatter slopes with south-eastern aspects. For example, the model predicts that, for a spadefoot encountering a site on a south-facing slope, there would be a 0.02 probability that they would choose to burrow if the site had a 30 degree slope, a probability 0.62 if it had a 6 degree slope (the mean slope at our sites), and a 0.90 if it was on flat ground. If the spadefoot encountered a site on a 6-degree slope, they would have a 0.49 probability of choosing to burrow if the site was a north-facing location, a 0.43 probability if it were west-facing, and a 0.78 probability if it were east-facing (Table 3).

Soil characteristics of aestivation locations

Total organic matter was not a statistically significant predictor of whether a spadefoot would choose to aestivate at a given site. The soil-texture classification for all soil cores ranged from loamy sand to silt loam (Fig 4). The first principal component, representing the greatest variation in soil textures across our sites, was not significant in determining spadefoots’ choice of aestivation sites, but the second component was significant (Table 3). Because the second principal component had weightings of -0.21 for sand, -0.58 for silt, and 0.79 for clay, and the corresponding model parameter was negative (-2.79), we conclude that spadefoots tended to prefer soils with less clay and more sand and silt, with the preference against clay as the more dominant effect (Fig 4). This agrees with the results of a model including just percent clay and percent silt: for a site with one additional percent clay from the mean value, the clay/silt model predicts that the probability of a spadefoot choosing to aestivate there would drop from 0.51 to 0.40, while for an additional percent silt, the probability of spadefoot aestivation would rise from 0.51 to 0.56.

Fig 4. Ternary soil map showing percent composition of clay, sand, and silt at spadefoot sites.

Fig 4

On each side the arrow indicates which direction to read for that soil type (e.g. "clay" percentages are read horizontally). Black "X"s indicate the soil texture of pseudoabsence sites and black "O"s indicate soil texture of aestivation sites for our 15 spadefoots. The thick gray lines indicate principal component combinations of soil textures: principal component 1 (longer line) reflects the greatest variation in soil composition in our sites (which spadefoots did not respond to in choosing aestivation sites), and principal component 2 (shorter line) reflects the deviation from the first component (which spadefoots did respond to in choosing aestivation sites). In particular, spadefoots tend to avoid clay soils. In color are model predictions using those two principal components: red signifies 99.7% probability of finding a spadefoot, while light yellow indicates 79.6% probability of finding a spadefoot.

Discussion

We documented details of the terrestrial activity and burrow site characteristics of S. hammondii, which was previously unknown for the species [18,23]. No previous studies had been conducted on the upland habitat use of western spadefoots; the work done by Ruibal et al. [45] focused on Spea multiplicata when it was still thought to be a subspecies of S. hammondii. Our findings can establish minimum buffer distances and type of habitat required for the conservation of the species and set a starting point for future study of this species’ habitat needs–key information given that habitat loss is the driving factor in the western spadefoot being considered for listing under the Endangered Species Act [19] as well as its status as a Priority I Species of Special Concern in California [18].

Current conservation efforts for the western spadefoot include delineating buffer zones around known breeding pools. Based on our results, the 76 m buffer around vernal pools required by the California Department of Fish and Wildlife [46] encompasses 169/194 (87%) of spadefoot burrows. This amount may be enough habitat to maintain the local populations at our sites [12], but it does not consider habitat quality within the buffer area. The minimum terrestrial buffer distance of 368 m recommended by the U. S. Fish and Wildlife Service [15] would encompass all the spadefoot home ranges in our study. In rapidly urbanizing environments, implementation of a 368 m buffer around all breeding pools might not be feasible; therefore, important habitat elements such as aestivation locations and migration/dispersal corridors should be identified and conserved [30].

For the S. hammondii in coastal California, one important habitat element is grassland for burrowing, as indicated by our satellite-imagery based analysis. Other spadefoot species including Spea intermontana and the European spadefoot (Pelobates fuscus), were found to use grassland or areas with short vegetation rather than shrub habitat; however, both of those species were more likely to burrow in bare ground [14,26], unlike the S. hammondii at our sites which had over half of their burrows in areas characterized by duff. The duff present at both sites is the product of non-native annual grasses in the genera Bromus and Avena; very little native grass was present at either site. The duff could act as cover for spadefoot movement and could also limit evaporation, thus conserving soil moisture for spadefoot burrows [47]. In addition, three spadefoots aestivated within one meter of each other at the only tree-dominated habitat at one site. The tree’s shade could keep the area cool during a hot summer, and it may also regulate soil moisture through leaf-litter mulch and hydraulic lift of the roots [48]. Tree cover could therefore be another important habitat element to conserve, and further study is warranted.

Another major habitat element may be the presence of mammal burrows. Like the sympatric California tiger salamander (Ambystoma californiense), the western spadefoot showed a preference for burrow placement adjacent to or in California ground squirrel (Spermophilus beechyi) and Botta’s pocket gopher (Thomomys bottae) burrows [6]. The benefit of using mammal burrows include the ease of digging and the potential for optimal moisture conditions [4950]. However, unlike salamanders, spadefoots are excellent diggers; therefore, we cannot assume that they were inside the gopher and ground squirrel burrows. In fact, during welfare checks, we found that one spadefoot had dug his own burrow adjacent to, but not in, a ground squirrel burrow. Use of pre-existing burrows does not come without risk; the western spadefoot could be using the disturbed soil next to or immediately inside burrows to aid their digging, as has been found for the Great Basin spadefoot [14], without directly facing the occupants of the burrows.

The spadefoots in our study stayed closer to the pool locations compared to sympatric species such as the Baja California treefrog (Pseudacris hypochondriaca), western toad (Anaxyrus boreas), and A. californiense. Brattstrom and Warren [51] found P. hypochondriaca 457–914 m from a lake in southern California, whereas A. boreas have been found to move between an average of 218 m and 1800 m from breeding ponds depending on sex and site, and have been observed up to 7.4 km from their breeding sites [5254]. A. californiense migrates farther than all but one other salamander species, with a median distance of 556 m [55]. By contrast, the spadefoots in our study moved a mean maximum distance of 69 m (SD ± 61.48) and a maximum distance of 262 m from the pool. Considering that we found rain to be a significant predictor of spadefoot movement and distance moved, the ongoing drought during our study could have negatively impacted spadefoot movement distances. Rainfall was about 50% below the 60-year average during the 2012–2013 season [42]. In wetter years, the western spadefoot could potentially move much longer distances. For comparison, the closely related eastern spadefoot (S. holbrookii) can disperse an estimated maximum distance 449 m away from breeding pools, though this is under conditions with four times the amount of rain that fell in southern California during our study [13], and the Great Basin spadefoot (S. intermontane) has been shown to move up to 2,350 m away from breeding pools [15],.

The movements we observed were not sufficient to connect the two sites studied to other known spadefoot breeding locations, the closest being a road rut 816 m from the Crystal Cove site. Knowledge of spadefoot dispersal is important for preserving the genetic diversity of S. hammondii populations [2]. Although we do not know if S. hammondii populations historically functioned as a metapopulation (i.e. with some exchange of individuals between subpopulations leading to increased genetic diversity and the recolonization of breeding pools following local extinction events [56]), our findings on spadefoot dispersal suggest that subpopulations may no longer be connected. Five years of drought dried pools, and the subsequent lack of breeding, could heighten the likelihood of local extinction at both the Crystal Cove and the Laguna Coast Wilderness sites.

Unfortunately, our study had some limitations, including male bias, low sample size and the fact that our study sites were spatially close together on the coast. In addition, there is always the chance that implantation of radio transmitters could impact behavior. However, telemetry studies of other spadefoot species have not shown a significant effect of transmitters on spadefoot behavior [1315]. Because the spadefoot in our study utilized their terrestrial habitat differently from closely related and sympatric species, further research is warranted to determine if this difference was a result of low rainfall, or if it only applies to coastal populations. Western spadefoots are found in a variety of habitats, including coastal sage scrub, chaparral, oak woodlands, grasslands, washes, and floodplains along the California coast through the Central Valley and into the Sierra Nevada foothills [18,23]. Comparing movement and burrow preference of inland and coastal populations as well as repeating the study with a larger, more balanced sample size over multiple years to capture the effect of changes in climate on habitat use and movement could provide additional insight on the natural history of this species while also informing land managers as to the terrestrial requirements of different spadefoot populations.

Supporting information

S1 Table. Spadefoot summary data.

Table giving the length, mass, sex, capture date, number of telemetry fixes, number of burrows used, maximum distance from pool in meters, mean distance between burrows in meters, standard deviation of distance between burrows, minimum convex polygon home range in square meters, percent grass in that home range, depth of burrow in centimeters, and site location of each animal in our study.

(XLS)

Acknowledgments

We thank our field volunteers and the Serrano Animal Hospital, in particular, Dr S. Weldy, Dr K. Krause and Dr N. Beaudet. This manuscript was improved by comments from D. Sandquist, J. Solera, and J. Carroll. Any use of trade names or specific product is for descriptive purposes only and does not imply endorsement of the U. S. Government. This study is contribution 502 of the U. S. Geological Survey Amphibian Research and Monitoring Initiative (ARMI).

Data Availability

All data files are available from the Dryad database (doi:10.5061/dryad.8359820, https://datadryad.org/review?doi=doi:10.5061/dryad.8359820).

Funding Statement

K. B. received funding from the Laguna Canyon Foundation (https://lagunacanyon.org/), the Association of Zoos and Aquariums Amphibian Taxon Advisory Group Conservation Fund (https://www.aza.org/amphibian-conservation), and the Natural Communities Coalition (formally the Nature Reserve of Orange County) (https://occonservation.org/). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

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Decision Letter 0

William David Halliday

11 Jul 2019

PONE-D-19-16369

Movement and habitat selection of the western spadefoot (Spea hammondii) in southern California

PLOS ONE

Dear Ms. Baumberger,

Thank you for submitting your manuscript to PLOS ONE. After careful consideration, we feel that it has merit but does not fully meet PLOS ONE’s publication criteria as it currently stands. Therefore, we invite you to submit a revised version of the manuscript that addresses the points raised during the review process.

This is an interesting study with important conservation implications. Both reviewers and I agree that it is generally well written, and with some minor revisions, could be acceptable for publication. Please address all comments from both reviewers, as well as my few comments (see below) when revising your manuscript.

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Additional Editor Comments:

This is an interesting study with important conservation implications. Both reviewers and I agree that it is generally well written, and with some minor revisions, could be acceptable for publication. Please address all comments from both reviewers, as well as my few comments (see below) when revising your manuscript.

Minor comments:

Manuscript currently uses both “vernal” and “ephemeral”. Both are synonymous, but better to use consistent terminology throughout, so pick one and stick with it.

Line 73: Should say “and the species is under review” (not “in under review”)

The use of percent in the results makes the text quite confusing. I’ll use results from the Burrow Locations as an example. How can 100% duff be selected 95% of the time and 100% grass selected 32% of the time? The spadefoot would spend > 100% of time in both habitats, which is not possible, unless of course a site can be both 100% grass and 100% duff. Similarly, spadefoots select sites without pre-existing burrows 43% of the time, but sites with pre-existing burrows 76% of the time. In this latter example, I don’t know how the sum of sites without burrows and sites with burrows can add up to anything more than 100%. I assume you’re calculating log-odds ratios or something like this with your binomial regression results, but this is not equivalent to a percent. Please either clarify the interpretation of these results, or find a different way of communicating your results using something other than percent.

Line 352: add a comma or semi-colon before “very little native grass”. Otherwise, the sentence does not work.

[Note: HTML markup is below. Please do not edit.]

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Reviewer #1: Yes

Reviewer #2: Partly

**********

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Reviewer #2: Yes

**********

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Reviewer #1: Yes

Reviewer #2: Yes

**********

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Reviewer #2: Yes

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Reviewer #1: This study examines the upland habitat use of western spadefoot toads. Overall, statistical analyses seem sound, and it provides a solid baseline of habitat use data. As you will see, my only major concern is the description of the principal components analysis and its usefulness for guiding conservation. I provide a suggestion for replacing it below.

Lines 44-46: It would be shorter to write “range: 1-204 m” than to write out “min = 1 m – max = 204 m”

Line 73: Change “in” to “is”

Line 74: Capitalize Endangered or Threatened

Line 126: Can you say a bit more about what the animals were doing when captured? Were they migrating toward or away from the breeding pond, etc.?

Line 135: Place apostrophe after the s and change location to locations.

Line 146: Slope would not be recorded with a compass. How was slope measured?

Lines 208-210, 310-313 & 321-323: The authors need to change the way they describe principal components. The first principal component is not the average of the sites. The first principal component is the primary axis of variation across the sites. The second principal component captures as much of the remaining variation as possible, provided that it is orthogonal to the first. If the authors decide to keep the principal components analysis, then they should report the percentage of variation that is captured by each principal component. However, I would suggest dropping the principal components entirely. I realize that the reason for using them was that the three axes in the ternary graph are not independent from each other, and thus there was an issue with analyzing all three. However, the principal components in this case are difficult to interpret (they almost always are), so the reader is left wondering, “What does it mean that toads have a negative association with principal component 2?” It sounds like the interpretation is that toads dislike clay and like sand? Why not just analyze those two axes of the ternary plot and skip silt? That way you are not analyzing the third confounded axis, and if there is a direct association between toads and either clay or sand, then readers will be able to interpret what that actually means and apply it to conserving appropriate habitat for spadefoots.

Line 232: Insert comma after “period”

Line 235: Insert comma before “with”

Line 237: Insert comma before “which”

Line 250: In Table 2 it gives a wide range of MCPs, making it seem like MCPs were created for each individual toad. In the text, however, it only describes methods in which a single MCP was created for all toads at the same site. Can the methods be updated?

Lines 261-263: The movement distances predicted by the model seem high given that the mean distance between burrows was 18 m. Why are all predicted movements above the mean movement distance?

Lines 282-284: Why is this result not in Table 3? This seems like one of the most important results, and currently if a reader only looked at Table 3 they would think that toads are avoiding grasses rather than usually inhabiting them. I realize those results are at two different spatial scales, but someone skimming the paper might miss that distinction unless they are both highlighted in the table.

Lines 349-354: This section is trying to explain why western spadefoots don’t prefer bare ground the way that two of their close relatives do. However, bare ground wasn’t even one of the vegetation cover categories in this dataset. Thus, western spadefoots might prefer bare ground if it was available, but it simply isn’t available at these sites? Among the vegetation cover types that are available, is duff most similar to bare ground? Also, insert a semi-colon before “very”.

Lines 357-358: If tree cover is truly important, then why isn’t there a positive association with leaf litter?

Line 375: Insert a comma before with.

Lines 384-385: I think it’s good to bring up the possibility of limited rainfall being a confounding factor. However, I don’t know that is should be dwelt on quite this much. Eastern spadefoot are a different species, and thus may migrate a different distance for a number of reasons. Maybe drop this sentence?

Line 393: Insert comma after pools.

Line 394: Change heighten to heightened.

Reviewer #2: Manuscript Title: Movement and habitat selection of the western spadefoot (Spea hammondii) in southern California.

Manuscript Number: PONE-D-19-16369

Reviewer Comments to Authors:

This work describes research competed for the western spadefoot (Spea hammondii) on burrow selection and upland habitat use for two discrete sites within southern California. Utilizing radio-telemetry, the authors tracked 15 animals to determine the selection of burrow sites and the habitat preferences at these sites. The authors note that movements away from breeding ponds and between burrow sites are relatively small, restricted to less than 262-m. Western spadefoot in this study appear to select for specific habitat attributes at the microhabitat scale including selection for duff over grass or shrub cover. This study provides the first work on burrow habitat selection for western spadefoot.

Overall the manuscript is relatively clear and concise and provides an excellent starting point for further research for this species. While no major issues were noted during this review, several minor issues were noted that are highlighted below and annotated in the .pdf of the manuscript which is included in this review submission. Note that the annotated .pdf provides further comments and notes.

1. There are several grammatical issues that can be corrected to improve on the manuscript. Some of these have been noted in the marked up .pdf.

2. The introduction could benefit from a more comprehensive review of available literature for amphibian movements, in particular, an overview of available literature for other spadefoot and/or sympatric species.

3. A stronger argument could be developed for why this research is required. How does improving on the understanding of habitat use for western spadefoot support the management for this species? Your executive summary is good and provides some context that could be used here. There is certainly some good information here that could be expanded upon.

4. The description of the study area is good. The addition of some spatial reference would help to improve on this description.

5. The methods regarding radio telemetry would benefit from some additional clarifications including information regarding sexing of spadefoots, transmitter weight ratios and transmitter recovery.

6. The methods describing vegetation characteristics provide a good overview with some clarifications provided. In particular, Table 1 appears to provide results versus methods. Consideration for edits to this table could be made.

7. The description of methods for describing soil characteristics is also good with minor clarifications on core sample locations required.

8. The data analysis utilized for this work appears to be appropriate for the intent of the work.

9. The discussion section would benefit from a more through review of available literature to provide context for the results of this work.

10. The paper would benefit from a discussion on the limitations of the work. Specifically on the small, male biased, sample size and the limitations imposed by two sample sites. It would be useful to address any potential limitations or impacts to behaviour resulting from surgical implantation of transmitters.

11. The paper would benefit from a more thorough discussion on potential future research including expanding on sample sizes and the number of study sites.

**********

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Reviewer #1: No

Reviewer #2: Yes: Dustin Oaten

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Attachment

Submitted filename: PONE-D-19-16369_reviewer.pdf

PLoS One. 2019 Oct 3;14(10):e0222532. doi: 10.1371/journal.pone.0222532.r002

Author response to Decision Letter 0


24 Aug 2019

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Additional Editor Comments:

This is an interesting study with important conservation implications. Both reviewers and I agree that it is generally well written, and with some minor revisions, could be acceptable for publication. Please address all comments from both reviewers, as well as my few comments (see below) when revising your manuscript.

Minor comments:

Manuscript currently uses both “vernal” and “ephemeral”. Both are synonymous, but better to use consistent terminology throughout, so pick one and stick with it.

Change accepted

Line 73: Should say “and the species is under review” (not “in under review”)

Change accepted

The use of percent in the results makes the text quite confusing. I’ll use results from the Burrow Locations as an example. How can 100% duff be selected 95% of the time and 100% grass selected 32% of the time? The spadefoot would spend > 100% of time in both habitats, which is not possible, unless of course a site can be both 100% grass and 100% duff. Similarly, spadefoots select sites without pre-existing burrows 43% of the time, but sites with pre-existing burrows 76% of the time. In this latter eWe appreciate the attention to the flow of the introduction xample, I don’t know how the sum of sites without burrows and sites with burrows can add up to anything more than 100%. I assume you’re calculating log-odds ratios or something like this with your binomial regression results, but this is not equivalent to a percent. Please either clarify the interpretation of these results, or find a different way of communicating your results using something other than percent.

Thank you for noting the confusing nature of these sections. It is of course challenging to present results on the probability scale which are meaningful to the question at hand (especially when some of the predictor variables are themselves percents!). We have re-written the section to clarify that it is not whether a given novel spadefoot chooses A or B (because they must have chosen one or the other, i.e. the probabilities sum to 1), but rather the probability that a spadefoot encountering a specific novel site with given characteristics will choose to burrow there or not. We have also shifted to referring to probabilities rather than percentages.

For example, “the model predicts that a spadefoot encountering a site composed entirely of grass has probability 0.32 of choosing to burrow there (significantly less than 0.50); if the site were composed entirely of shrub, a probability 0.42 of choosing to burrow there (significantly less than 0.50); and if it were composed entirely of duff, a probability 0.95 of choosing to burrow (significantly more than 0.50).” We have similarly rephrased the other parts of the results referring to percentages/probabilities as well.

Line 352: add a comma or semi-colon before “very little native grass”. Otherwise, the sentence does not work.

Change accepted

Reviewer Comments to Authors:

Reviewer #1: This study examines the upland habitat use of western spadefoot toads. Overall, statistical analyses seem sound, and it provides a solid baseline of habitat use data. As you will see, my only major concern is the description of the principal components analysis and its usefulness for guiding conservation. I provide a suggestion for replacing it below.

Lines 44-46: It would be shorter to write “range: 1-204 m” than to write out “min = 1 m – max = 204 m”

Change accepted

Line 73: Change “in” to “is”

Change accepted

Line 74: Capitalize Endangered or Threatened

Change accepted

Line 126: Can you say a bit more about what the animals were doing when captured? Were they migrating toward or away from the breeding pond, etc.?

We have added this information. Seven of the animals were found on the surface, presumably foraging since that breeding pond did not fill. The other eight were found in or near the breeding pond when water was present.

Line 135: Place apostrophe after the s and change location to locations.

Change accepted

Line 146: Slope would not be recorded with a compass. How was slope measured?

Slope was measured with the clinometer that is built into the compass. This has been added to the manuscript.

Lines 208-210, 310-313 & 321-323: The authors need to change the way they describe principal components. The first principal component is not the average of the sites. The first principal component is the primary axis of variation across the sites. The second principal component captures as much of the remaining variation as possible, provided that it is orthogonal to the first. If the authors decide to keep the principal components analysis, then they should report the percentage of variation that is captured by each principal component. However, I would suggest dropping the principal components entirely. I realize that the reason for using them was that the three axes in the ternary graph are not independent from each other, and thus there was an issue with analyzing all three. However, the principal components in this case are difficult to interpret (they almost always are), so the reader is left wondering, “What does it mean that toads have a negative association with principal component 2?” It sounds like the interpretation is that toads dislike clay and like sand? Why not just analyze those two axes of the ternary plot and skip silt? That way you are not analyzing the third confounded axis, and if there is a direct association between toads and either clay or sand, then readers will be able to interpret what that actually means and apply it to conserving appropriate habitat for spadefoots.

We have corrected the description of the principal components and included the percent of variation accounted for in each component. The methods section now states: “Therefore we conducted a principal components analysis (using the “prcomp” function in R), which gave a first component reflecting the greatest variation in soil composition in our sites (98%), and a second component orthogonal to the first which reflected the second greatest variation in soil characteristics (2%).” We have similarly corrected the language elsewhere in the manuscript to match, and have also made a note in the Results that the spadefoots do not apparently respond to the axis representing the most variation, but to the second component orthogonal to that.

The principal components are actually in some ways more interpretable than the original variables, because the three variables are highly correlated (in addition to being complementary/summing to 100%). We have added a note to the Methods regarding the correlations, as well as the fact that our sites appear to be confined to a narrow band of soil textures.

Note that trying to use the raw variables has poor results due to the correlations between them. However, we do agree with Reviewer #1 that principal components are difficult to draw conclusions from. Because only one component was significant in the statistical model, we give the coefficients from that component (PC2) and extrapolate from the coefficients and the sign of its model parameter that spadefoot prefer sand and silt and dislike clay (which is consistent with what one can see in the figure). We also report parameters in the results for a parallel model using silt and clay (the two least correlated soil textures), which confirms that the preference against clay is stronger than the preference for silt.

Line 232: Insert comma after “period”

Change accepted

Line 235: Insert comma before “with”

Change accepted

Line 237: Insert comma before “which”

Change accepted

Line 250: In Table 2 it gives a wide range of MCPs, making it seem like MCPs were created for each individual toad. In the text, however, it only describes methods in which a single MCP was created for all toads at the same site. Can the methods be updated?

The methods have been updated. We had originally only included minimum convex polygons by site because we had so few locations, but we estimated them by animal to show the variation in the amount moved.

Lines 261-263: The movement distances predicted by the model seem high given that the mean distance between burrows was 18 m. Why are all predicted movements above the mean movement distance?

The movement distances predicted by the model are for radial distances from the pool (mean distance = 40 m), while the mean distance between burrows could be much shorter. We have added some text to clarify this: “Number of meters moved away from or towards the breeding pool was predicted by rain in cm and by the animal random effect.”

Lines 282-284: Why is this result not in Table 3? This seems like one of the most important results, and currently if a reader only looked at Table 3 they would think that toads are avoiding grasses rather than usually inhabiting them. I realize those results are at two different spatial scales, but someone skimming the paper might miss that distinction unless they are both highlighted in the table.

Table 3 includes only statistical results, and the results pertaining to the remotely sensed data were not statistically tested in the previous draft, only summarized. We have now included a Chi-squared test of independence for these results in Table 3 (see row 1 and footnote 2). Note that we have now simplified the text in the prose portion of the results and referred to the Table. (We have also mentioned the Chi-squared test in the Methods)

Lines 349-354: This section is trying to explain why western spadefoots don’t prefer bare ground the way that two of their close relatives do. However, bare ground wasn’t even one of the vegetation cover categories in this dataset. Thus, western spadefoots might prefer bare ground if it was available, but it simply isn’t available at these sites? Among the vegetation cover types that are available, is duff most similar to bare ground?

We had initially not included bare ground in the analysis, because it was the complement of grass, leaf litter, and duff (they typically summed to 100%, constituting the understory layer). This means that bare ground percentage is strongly correlated with those variables and will impact their parameter estimates and p-values, so we chose to leave it out of the statistical model. We had also left out tree cover, because tree cover was rare in our dataset.

We have re-done the statistical model to include tree cover and bare/open ground, and neither are significant (the significance and relative magnitude of the parameters for the other cover types are essentially unchanged). We now report tree and bare ground cover statistical results in Table 3, along with slightly updated parameter estimates and p-values for grass, duff, and shrub.

Also, insert a semi-colon before “very”.

Change accepted.

Lines 357-358: If tree cover is truly important, then why isn’t there a positive association with leaf litter?

Leaf litter is transported some distance away from a given tree and could serve a different function for spadefoots. We highlight the other ecological functions of trees as a potentially important habitat factor: shade, hydraulic lift.

Line 375: Insert a comma before with.

Change accepted.

Lines 384-385: I think it’s good to bring up the possibility of limited rainfall being a confounding factor. However, I don’t know that is should be dwelt on quite this much. Eastern spadefoot are a different species, and thus may migrate a different distance for a number of reasons. Maybe drop this sentence?

We do think that rain has a significant impact on spadefoot movement, but have taken this comment into consideration and dropped the sentence.

Line 393: Insert comma after pools.

Change accepted

Line 394: Change heighten to heightened.

We are not certain that it has heightened the risk, therefore we changed this to “could heighten.”

Reviewer #2:

This work describes research competed for the western spadefoot (Spea hammondii) on burrow selection and upland habitat use for two discrete sites within southern California. Utilizing radio-telemetry, the authors tracked 15 animals to determine the selection of burrow sites and the habitat preferences at these sites. The authors note that movements away from breeding ponds and between burrow sites are relatively small, restricted to less than 262-m. Western spadefoot in this study appear to select for specific habitat attributes at the microhabitat scale including selection for duff over grass or shrub cover. This study provides the first work on burrow habitat selection for western spadefoot.

Overall the manuscript is relatively clear and concise and provides an excellent starting point for further research for this species. While no major issues were noted during this review, several minor issues were noted that are highlighted below and annotated in the .pdf of the manuscript which is included in this review submission. Note that the annotated .pdf provides further comments and notes.

1. There are several grammatical issues that can be corrected to improve on the manuscript. Some of these have been noted in the marked up .pdf.

See responses below.

2. The introduction could benefit from a more comprehensive review of available literature for amphibian movements, in particular, an overview of available literature for other spadefoot and/or sympatric species.

We have cited several papers on other spadefoot species elsewhere in the paper, but we have now rewritten the first two paragraphs of the introduction and now include those citations here as well. We have also included new citations (Richardson and Oaten 2013).

Richardson, J.S. et D. Oaten. 2013. Critical breeding, foraging, and overwintering habitats of Great Basin spadefoot toads (Spea intermontana) and western toads (Anaxyrus boreas) within grassland ecosystems: 2013 final report. Prepared for Can. Wildl. Fed., Kanata, ON.

3. A stronger argument could be developed for why this research is required. How does improving on the understanding of habitat use for western spadefoot support the management for this species? Your executive summary is good and provides some context that could be used here. There is certainly some good information here that could be expanded upon.

We have rewritten the first two paragraphs of the introduction to clarify the argument for this study. We focus on the natural history of burrowing species, where the distance from the pools is particularly important, and this information (as well as habitat preferences, etc) is not known for Western spadefoot.

4. The description of the study area is good. The addition of some spatial reference would help to improve on this description.

See below (spatial reference to entrance gates added).

5. The methods regarding radio telemetry would benefit from some additional clarifications including information regarding sexing of spadefoots, transmitter weight ratios and transmitter recovery.

See below (this information was added)

6. The methods describing vegetation characteristics provide a good overview with some clarifications provided. In particular, Table 1 appears to provide results versus methods. Consideration for edits to this table could be made.

Table 1 has been moved to the results section and has been renumbered as Table 2.

7. The description of methods for describing soil characteristics is also good with minor clarifications on core sample locations required.

We have added language to clarify the locations of core samples.

8. The data analysis utilized for this work appears to be appropriate for the intent of the work.

9. The discussion section would benefit from a more through review of available literature to provide context for the results of this work.

We have conducted another literature review and added several citations (see below).

10. The paper would benefit from a discussion on the limitations of the work. Specifically on the small, male biased, sample size and the limitations imposed by two sample sites. It would be useful to address any potential limitations or impacts to behaviour resulting from surgical implantation of transmitters.

We have added language discussing the limitations of the work. Unfortunately, there is no way to do this kind of study without telemetry and there is always the possibility that any kind of transmitter will have an impact on animal behavior. But previous studies have found no significant effect and we have inserted language to reflect that.

11. The paper would benefit from a more thorough discussion on potential future research including expanding on sample sizes and the number of study sites.

We have added language addressing the need for further studies with larger sample sizes and more study sites in different habitats.

Specific comments from pdf:

line 57: “There is information available for the Great Basin spadefoot showing movements away from breeding ponds ”

The introduction now includes references to maximum distances for other spadefoot species (including Great Basin spadefoot).

line 64: “A stronger argument could be developed for why this research is required. How does improving on habitat use understanding support the management for this species and this habitats? Your executive summary is good and provides some context that could be used here.”

See response to general comments above, point 3

line 67: “Is there a more fluid way to tie these together? ”

We appreciate the attention to the flow of the introduction – we have now edited the introduction to clarify the importance of the study, which means the logic proceeds from buffer widths to the distances of aestivation of fossorial species, and from there to habitat use and movement. We have omitted the details regarding California regulations and species of special concern (this material is treated in the discussion).

line 74: “Italicize.” (ESA)

PLoS style is not to italicize "Endangered Species Act," see for example:

Dunk JR, Woodbridge B, Schumaker N, Glenn EM, White B, LaPlante DW, et al. (2019) Conservation planning for species recovery under the Endangered Species Act: A case study with the Northern Spotted Owl. PLoS ONE 14(1): e0210643. https://doi.org/10.1371/journal.pone.0210643

Valdivia A, Wolf S, Suckling K (2019) Marine mammals and sea turtles listed under the U.S. Endangered Species Act are recovering. PLoS ONE 14(1): e0210164. https://doi.org/10.1371/journal.pone.0210164

Gibbs KE, Currie DJ (2012) Protecting Endangered Species: Do the Main Legislative Tools Work? PLoS ONE 7(5): e35730. https://doi.org/10.1371/journal.pone.0035730

line 80: “size”

Change accepted

line 104: “UTMs or other spatial reference.”

Because of the sensitivity of the species we do not provide the location of the breeding pools; instead we provide coordinates for the entrance gates of the parks which are publicly accessible.

line 126: “Reference”

A reference was added.

line 126: “Include info on morphological features used to determine sex.”

Change accepted, we have added language to describe how we determined the animal’s sex.

line 127: “Were reproductive females excluded from captured animals?”

Reproductive females were not excluded from captured animals, we just didn’t catch very many of them. As stated, we captured animals opportunistically, and calling males are easier to find.

line 129: “Weight of transmitter and relative proportion of study animal mass.”

We have added language with this information to the manuscript.

line 132: “How are ill effects defined? Proportion of body mass loss, maintenance of capture weight? ”

We have added language with this information to the manuscript.

line 137: “Should explicitly state here that transmitters were not removed. Also note why utilizing implanted transmitters was used.”

We have added language about why we used internal transmitter. We state that transmitters were not removed in the results section (line 257)

line 142: “State explicitly how many plots were completed (167?) .”

We have explicitly stated how many plots were completed. We feel this fits better into the results section; it has been added there.

line 150: “Noted as 262-m elsewhere.”

We used a 300 m radius to encompass the maximum single movement of the spadefoot, plus a bit extra in cased they moved some more. We added language to this effect.

line 162: “Title for the table could be updated to reflect the information presented. This is a summary of the characteristics at burrow locations. The rainfall data is assumed to be for each site, versus burrow locations. ”

Change accepted.

line 162: “This Table seems to be better suited to being placed in the results section versus material and methods.” (Table 1)

Change accepted.

line 168: “How many different spadefoots did this represent? Need to understand if this data was collected from several representative burrow locations,”

We have included language to make it clear that all 15 spadefoot were included with 11 samples.

line 172: “Table 1, above, does not appear to depict burrow depth.”

We have renumbered the tables. Table 1 now depicts burrow depth.

line 247: “Remove” (species name)

Change accepted

line 327: “Specifically burrow site characteristics.”

Change accepted.

line 368: “Garner (2012) notes that Great Basin spadefoot utilized the friable soil inside animal burrows as a starting point for burrow sites.”

We have added this reference.

line 373: “There are several research articles on western toad that highlight much longer movements away from breeding ponds (>7 km).”

We have added a reference to this effect.

Schmetterling DA, Young MK. Summer movements of boreal toads (Bufo boreas boreas) in two western Montana basins. J Herptol. 2008;42:111-123.

line 376: “Note that there is recent information for the Great Basin spadefoot showing much larger movements away from breeding ponds - up to 2,350 m (see "Recovery Strategy for the Great Basin Spadefoot (Spea intermontana) in Canada' for a summary).”

Environment and Climate Change Canada. 2017. Recovery Strategy for the Great Basin Spadefoot (Spea intermontana) in Canada. Species at Risk Act Recovery strategy series. Environment and Climate Change Canada, Ottawa. 2 parts, 31 pp. + 40 pp.

We have added this to the manuscript for comparison.

line 380: “Good point. Do note that spadefoot toads are very well adapted to dry ecosystems and rainfall may not be restrictive to movements. ”

From the results of our study we feel that rainfall could be restrictive to movements. They have adapted to dry ecosystems by not moving when it doesn’t rain.

This figure would benefit from a legend to define the lines.

We respectfully decline this change. We feel that a legend would be too crowded with all the spadefoot lines, and that the caption adequately defines the lines.

Attachment

Submitted filename: Response To Reviewers.doc

Decision Letter 1

William David Halliday

3 Sep 2019

Movement and habitat selection of the western spadefoot (Spea hammondii) in southern California

PONE-D-19-16369R1

Dear Dr. Baumberger,

We are pleased to inform you that your manuscript has been judged scientifically suitable for publication and will be formally accepted for publication once it complies with all outstanding technical requirements.

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With kind regards,

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Academic Editor

PLOS ONE

Additional Editor Comments (optional):

Good job on the revisions.

Reviewers' comments:

Acceptance letter

William David Halliday

25 Sep 2019

PONE-D-19-16369R1

Movement and habitat selection of the western spadefoot (Spea hammondii) in southern California

Dear Dr. Baumberger:

I am pleased to inform you that your manuscript has been deemed suitable for publication in PLOS ONE. Congratulations! Your manuscript is now with our production department.

If your institution or institutions have a press office, please notify them about your upcoming paper at this point, to enable them to help maximize its impact. If they will be preparing press materials for this manuscript, please inform our press team within the next 48 hours. Your manuscript will remain under strict press embargo until 2 pm Eastern Time on the date of publication. For more information please contact onepress@plos.org.

For any other questions or concerns, please email plosone@plos.org.

Thank you for submitting your work to PLOS ONE.

With kind regards,

PLOS ONE Editorial Office Staff

on behalf of

Dr. William David Halliday

Academic Editor

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Associated Data

    This section collects any data citations, data availability statements, or supplementary materials included in this article.

    Supplementary Materials

    S1 Table. Spadefoot summary data.

    Table giving the length, mass, sex, capture date, number of telemetry fixes, number of burrows used, maximum distance from pool in meters, mean distance between burrows in meters, standard deviation of distance between burrows, minimum convex polygon home range in square meters, percent grass in that home range, depth of burrow in centimeters, and site location of each animal in our study.

    (XLS)

    Attachment

    Submitted filename: PONE-D-19-16369_reviewer.pdf

    Attachment

    Submitted filename: Response To Reviewers.doc

    Data Availability Statement

    All data files are available from the Dryad database (doi:10.5061/dryad.8359820, https://datadryad.org/review?doi=doi:10.5061/dryad.8359820).


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