Table 5.
Sample | Raw Reads | Clean Reads | Error Rate (%) | Q20 (%) | Q30 (%) | GC Content (%) | Mapped Reads | Mapping Ratio (%) |
---|---|---|---|---|---|---|---|---|
CON1 | 69574378 | 66118288 | 0.014 | 97.55 | 93.10 | 53.09 | 44762303 | 67.70 |
CON2 | 86256452 | 81986216 | 0.014 | 97.55 | 93.10 | 53.04 | 57458904 | 70.08 |
CON3 | 63166500 | 61480000 | 0.015 | 97.28 | 91.61 | 52.09 | 44125392 | 71.77 |
MCB1 | 73128306 | 71283226 | 0.015 | 97.39 | 91.86 | 51.89 | 54736639 | 76.79 |
MCB2 | 70861430 | 69014276 | 0.015 | 97.36 | 91.83 | 51.46 | 53077396 | 76.91 |
MCB3 | 68653432 | 67100512 | 0.014 | 97.48 | 92.08 | 51.87 | 50924758 | 75.89 |
ANT1 | 56781984 | 54956604 | 0.016 | 97.16 | 91.28 | 51.42 | 41418070 | 75.37 |
ANT2 | 68298598 | 66725288 | 0.015 | 97.39 | 91.86 | 52.78 | 47897114 | 71.78 |
ANT3 | 83351864 | 81730498 | 0.014 | 97.56 | 92.30 | 52.89 | 56127772 | 68.67 |
1 GC, guanine-cytosine; Q20, Phred quality score 20; Q30, Phred quality score 30; Mapping ratio, mapped reads/all clean reads.