Abstract
Metabolic reprogramming is rapidly gaining appreciation in the etiology of immune cell dysfunction in a variety of diseases. Tuberculosis, schistosomiasis, and sarcoidosis represent an important class of diseases characterized by the formation of granulomas, where macrophages are causatively implicated in disease pathogenesis. Recent studies support the incidence of macrophage metabolic reprogramming in granulomas of both infectious and non-infectious origin. These publications identify the mechanistic target of rapamycin (mTOR), as well as the major regulators of lipid metabolism and cellular energy balance, peroxisome proliferator receptor gamma (PPAR-γ) and adenosine monophosphate-activated protein kinase (AMPK), respectively, as key players in the pathological progression of granulomas. In this review, we present a comprehensive breakdown of emerging research on the link between macrophage cell metabolism and granulomas of different etiology, and how parallels can be drawn between different forms of granulomatous disease. In particular, we discuss the role of PPAR-γ signaling and lipid metabolism, which are currently the best-represented metabolic pathways in this context, and we highlight dysregulated lipid metabolism as a common denominator in granulomatous disease progression. This review therefore aims to highlight metabolic mechanisms of granuloma immune cell fate and open up research questions for the identification of potential therapeutic targets in the future.
Keywords: macrophage, immunometabolism, granuloma, tuberculosis, schistosomiasis, sarcoidosis
Introduction
At its core, a granuloma is a compact and organized structure formed by the initial aggregation of macrophages in response to a persistent stimulus (1, 2). A multitude of stimuli have been reported to evoke a granulomatous reaction, including infectious agents, the best studied of which are Mycobacterium tuberculosis and the parasitic trematode genus Schistosoma, non-infectious foreign bodies such as silica, pollutants, dust and biomedical implants (3, 4), as well as autoimmune or inflammatory diseases of unknown etiology, including sarcoidosis and Crohn's disease. It has also been suggested, particularly in the case of sarcoidosis, that a combination of infectious and non-infectious factors could be responsible for disease pathogenesis, with evidence suggesting Propionibacterium acnes or mycobacterial infection as potential environmental triggers (5).
Depending on the nature and persistence of the inciting stimulus, the macrophages at the core of the granuloma can undergo a series of distinct morphological changes, the most prominent involving epithelioid cell differentiation; an enigmatic process for which the exact trigger and molecular mechanisms have yet to be elucidated. The resultant macrophages, termed “epithelioid,” are characterized by a hypertrophic, flattened appearance, diffuse cytoplasm and elongated nuclei, as well as epithelial-like interdigitated cell membranes, enabling the cells to interlace and form an epithelioid barrier to wall off the persistent antigen (1, 6, 7). These epithelioid macrophages can further develop into multinucleated giant cells via as yet undefined mechanisms; however, cell-cell fusion (8, 9) and cytokinesis failure (10) have been proposed. Furthermore, in the case of tuberculosis granulomas, macrophages can transform into foam cells as a result of their enhanced accumulation of lipids as the infection progresses (11).
As the granuloma matures, a number of additional cells can be recruited to the structure—a process that depends heavily on the nature of the inciting agent. Such cells include granulocytes, monocytes, dendritic cells, B and T cells, NK cells and fibroblasts (1, 12, 13), which surround the macrophage core resulting in a complex and highly organized structure. A subsequent and final stage of granuloma maturation involves the development of pathological structures as a result of dysregulated inflammation, which are associated with tissue damage and morbidity. One such feature is the formation of a fibrotic outer capsule that occurs in granulomas of diverse etiology, including sarcoidosis and schistosomiasis. Another pathological feature, which develops primarily in granulomas of infectious origin, is the formation of necrotic regions within the central core of the granuloma. This is a characteristic that is well-studied in the case of tuberculosis, during which necrosis is associated with a failure of the immune response and results in bacterial dissemination and patient morbidity (14).
Due to the major clinical role of granulomas in an array of disease pathologies, the morphological properties of granuloma formation have been extensively studied. However, the fundamental and molecular core mechanisms involved in the granulomatous immune response are only starting to emerge. Our group recently identified the mechanistic target of rapamycin (mTOR) complex 1 (mTORC1) signaling pathway as a molecular mechanism in the initiation and maintenance of granulomas in mice, as well as its activation in sarcoidosis patients suffering from a progressive form of the disease (15). mTOR is well-known to sense and integrate a range of environmental signals to regulate cellular metabolism and cell growth in many cell types (16, 17). However, our work specifically revealed an involvement of macrophage mTORC1 signaling in the context of granuloma formation and development (15), thus highlighting the potential importance of macrophage immunometabolic responses in granulomatous disease. While mTORC1 was also recently identified as a driver of foam cell biogenesis in tuberculosis (18), the relevance of mTOR signaling in schistosomiasis remains to be elucidated. Likewise, adenosine monophosphate-activated protein kinase (AMPK) has been reported to orchestrate lipid catabolism and oxidative phosphorylation (OXHPOS) in tuberculosis (19, 20); however, an involvement of this metabolic regulator in schistosomiasis and sarcoidosis has barely been defined. Interestingly, peroxisome proliferator receptor gamma (PPAR-γ)-signaling has been implicated in the progression of all three diseases. As PPAR-γ is a master regulator of lipid homeostasis (21), this strongly suggests an involvement of lipid metabolism in the pathogenesis of granulomas.
Indeed, the significance of macrophage metabolic plasticity dependent on disease pathology is now widely accepted and the field of immunometabolism has gained momentum in recent years. New findings have emerged that shed light on the complex molecular mechanisms underpinning macrophage function across numerous diseases states; however, at present, such responses are exquisitely linked to the current M1/M2 framework of macrophage polarization. In this review, we focus on the current literature describing the immunometabolic programming of macrophages—as the workhorses at the forefront of granuloma formation, development and maintenance (1, 13)—in the best characterized examples of granulomatous disease: tuberculosis, schistosomiasis and sarcoidosis. In particular, we highlight literature pertaining to the role of PPAR-γ and lipid metabolism in the pathogenesis of these diseases, which suggests dysregulated lipid metabolism as a key contributor to granuloma fate.
A Prelude to M1/M2 Polarization and Its Immunometabolic Nature
At present, the concept of M1/M2 macrophage polarization, albeit oversimplified and based primarily on in vitro data, still remains one of the best means by which macrophage activation can be described. Classically activated M1 macrophages function at the crux of host defense by eliciting essential pro-inflammatory responses and bridging innate and adaptive immunity. In contrast, alternatively activated M2 macrophages are crucial to immune regulation by promoting the resolution of inflammation and preventing an exacerbated, chronic inflammatory state, as well as the maintenance of tissue homeostasis by inducing tissue healing and remodeling (22–24). M1 and M2 polarization states are additionally defined by distinct metabolic profiles that are crucial in driving the differential activation of macrophages (25). It is important to note, however, that while the scheme of M1/M2 polarization has been very useful in furthering our understanding of macrophage function and biology, in vivo and human studies point toward a larger, less distinct spectrum of polarization states (26, 27). Accordingly, it is becoming more common to refer to the subcategories, which include M1a, M1b, and M2a-c that are, in part, defined by their differential expression of chemokine receptors (28). Transcriptomic analyses have revealed that there are six main polarization states in humans that are highly sensitive to certain stimuli, and thus the nomenclature has also been adapted to “M(LPS),” “M(IL-4)” and others (29). In addition, there is significant evidence to suggest that these polarization states have a high plasticity and do not represent a terminal differentiation (30).
Nevertheless, the pathological consequences of the immunometabolic nature of macrophage polarization in granulomas are only just starting to emerge, with the tubercle granuloma currently constituting the best-studied example. Thus, while the metabolic landscape of granuloma macrophages in a human disease scenario will be much more complex, the simplified M1/M2 dogma and the use of in vivo models currently comprise the primary framework for discussing macrophage metabolism in the context of granulomatous disease. Below, we therefore provide a brief overview of the key immunometabolic features of M1/M2 macrophage polarization as an introduction to the subsequent discussion on their contributing roles in the pathology of tuberculosis, schistosomiasis and sarcoidosis.
Classically Activated (M1) Macrophages
M1 macrophage polarization is typically stimulated by inflammatory cytokines including interferon-gamma (IFN-γ) and/or tumor necrosis factor (TNF) in combination with Toll-like receptor (TLR) ligation (31). This leads to NF-κB signaling via the phosphorylation of Inhibitor of (I)κB kinase, and the activation of several interferon-regulatory factors (IRFs) (32), which are signature genes of the M1 macrophage phenotype. Although both TLR ligation and IFN-γ signaling can individually and redundantly induce the phenotype (31), it was recently shown in tumor-associated macrophages that both mechanisms may need to work synergistically to produce an effective, highly pro-inflammatory M1 switch (33). Metabolically, M1 macrophage activation classically involves the Warburg effect. This metabolic switch is well-known in oncology and refers to a distinct metabolic profile in tumor cells undergoing uncontrolled division, during which cells utilize glycolysis for rapid ATP generation in the presence of oxygen, termed “aerobic glycolysis” (34). In macrophages, this switch drives the essential increase in ATP production required to support the innate immune response to infectious insult and/or tissue injury, supporting the rapid production of inflammatory cytokines and enhancing phagocytosis (25). Both TLR ligation and LPS-induced increased hypoxia-inducible factor 1-α (HIF-1α) expression are associated with the Warburg effect in macrophages (35, 36). Specifically, HIF-1α links the effector functions of M1 macrophages to their metabolic profile by both activating glycolytic enzymes and directly promoting transcription of the inflammatory mediator IL-1β (36). Moreover, when HIF-1α is overexpressed in macrophages, mitochondrial OXPHOS is suppressed and the cells enter a highly glycolytic and inflammatory state with a clear M1 phenotype (37). It must be noted, however, that the Warburg effect has almost exclusively been observed in vitro and in cancer cells, and it has been proposed that M1 macrophages only exhibit a “Warburg-like” phenotype (38).
Alternatively Activated (M2) Macrophages
M2 macrophage polarization is brought about by the cytokines IL-4 and IL-13 released from CD4+ Th2 cells (39, 40). The IL-4/13 receptor activates insulin receptor substrate 2 (IRS2), leading to the upregulation of key M2 markers: Arg-1, RELMα, and Ym1. The IL-4/13 receptors signal via signal transducer and activator of transcription 6 (STAT6) to activate phospholipases and GATA binding protein 3 (GATA3), which are required for the production of chemokines and the anti-inflammatory cytokine IL-10 (41, 42). There is also evidence that IL-10 can produce an M2 or M2-like phenotype via the phosphorylation of STAT3, leading to the production of IL-10 in an autocrine manner (43, 44). Unlike their M1 counterparts, M2 macrophages are defined by their intact TCA cycle, which allows for the generation of FADH2 and NADH and the production of high ATP yields through OXPHOS. Concomitantly, M2 macrophages display increased glycolysis as a carbon source (15, 45). Importantly, an intact TCA cycle allows for the glycosylation of M2-specific mannose and lectin receptors by UDP-GlcNAc (46). OXPHOS in M2 macrophages is supported by fatty acid oxidation (FAO), and M2 polarization is marked by increased expression of the lipid scavenger receptor CD36, as well as a dependence on cell-intrinsic lysosomal lipolysis (38, 45, 47). M2 macrophages are also known to consume more glutamine than other macrophage phenotypes (48). Glutamine augments the production of UDP-GlcNAc (46) and glutaminolysis has been shown to produce α-ketoglutarate, a major metabolite and component of the TCA cycle (49). Glutamine-derived α-ketoglutarate promotes specific histone demethylation and transcription of M2 genes (49, 50).
Tuberculosis and the Immunometabolic Response: A Balancing Act
Tuberculosis is an infectious disease caused by the bacillus Mycobacterium tuberculosis (Mtb) and is one of the most frequent etiological triggers of granuloma formation. It is the leading cause of mortality from a single infectious agent and was responsible for an estimated 1.7 million deaths worldwide in 2017 (51). However, only a small proportion (5–10%) of the infected population will develop active tuberculosis, with a greater incidence in individuals infected with HIV or suffering from malnutrition or diabetes (51). It has therefore long been established that the outcome of Mtb infection depends upon a complex and dynamic interplay between host and pathogen (52–54), with the degree of bacterial virulence and host resistance defining the pathogenesis of disease (55–57).
Initial Host Responses to Mtb Infection
Tuberculosis is typically a disease of the lungs initiated upon inhalation of airborne droplets containing the tubercle bacilli at an estimated infectious dose of just a single bacterium (58, 59). The bacteria are subsequently deposited in the airways where they are phagocytosed by resident alveolar macrophages and transported into the lung parenchyma (60, 61). The generation of TNF-α and inflammatory chemokines by the infected macrophages then drives a localized inflammatory response involving the recruitment of additional mononuclear cells (52), including interstitial macrophages, monocytes, neutrophils, and dendritic cells, many of which Mtb subsequently infects (54). Dendritic cells transfer Mtb from the lungs to the local draining lymph nodes (62) for subsequent priming of naive T cells and the adaptive immune response (63), the development of which is unusually delayed during Mtb infection, taking up to 5–6 weeks in humans (64, 65). The latter has been attributed to successful immune evasion by the bacteria, which is thought to seek refuge within lung phagocytes (54). Thus, although Mtb is known to infect multiple immune cells in the lung, macrophages are considered to be the key players in the balance between bacterial containment and disease progression (66). Moreover, increasing evidence from non-human primate and/or human patient granulomas suggests that mycobacterial burden, as well as advancement to active disease, is associated with an increased proportion of alternatively activated M2 to classically activated M1 macrophages (67–69). We will explore this further in the following subsections, with a particular focus on the emerging importance of the immunometabolic characteristics of M1- vs. M2-like macrophages on the outcome of mycobacterial infection.
Distinct Immunometabolic Responses of Pulmonary Macrophages to Mtb
Tissue resident alveolar macrophages are the first cells to encounter invading mycobacteria after aerosol infection (54). Several studies in diverse model systems, encompassing mycobacterial infection of human alveolar macrophages (70–72), mouse models (73, 74) and zebrafish larvae (75), demonstrate an initial mycobactericidal role that is conserved in multiple tissue resident macrophages across species. However, these reports contend with numerous contradictory studies that render the alveolar macrophage as a favorable niche for the growth and survival of mycobacteria, acting as a shield against the bactericidal activity of subsequently recruited immune cells, as well as activation of the Th1 response (54).
At steady state, alveolar macrophages do not conform to the classical definition of M1 or M2 polarization, but instead exhibit a hybrid phenotype that affords a degree plasticity in keeping with their critical role in maintaining lung homeostasis (76, 77). It is logical that as sentinels of the lung, alveolar macrophages would mount an initial pro-inflammatory response to invading pathogens. Taking into account their potential to switch between activation states, it may not be surprising if they then re-polarize to a more M2-like status in response to a persistent pathogen to protect against hyperinflammation and exacerbated lung immunopathology. Such a switch toward an M2 state is particularly pertinent in the case of Mtb infection, considering the ability of mycobacteria to manipulate host immune responses to favor their own survival (52). Recent data suggesting alveolar macrophages are more permissive to Mtb replication than recruited monocyte-derived interstitial macrophages (78) highlight distinct metabolic programming as a critical factor in the differential antimycobacterial capacity of these two macrophage populations. This study utilized transcriptomic and subsequent pathway enrichment analyses, as well as functional in vivo and in vitro experiments employing inhibitors of different metabolic pathways, to reveal the metabolic preferences of Mtb-infected alveolar vs. interstitial macrophages. This work demonstrated that Mtb-infected alveolar macrophages preferentially utilize FAO and exhibit enhanced fatty acid uptake, as well as higher bacterial replication rates, than interstitial macrophages. As it is well-known that Mtb accesses host-derived fatty acids and cholesterol as a primary carbon source (79–82), the fact that alveolar macrophages exhibit enhanced fatty acid uptake may explain why they are more permissive to Mtb replication. Furthermore, Huang et al. (78) showed that a FAO inhibitor, etomoxir, almost entirely abolished the production of IFN-β in Mtb-infected BMDMs. As type I interferon responses have been shown in multiple studies to be detrimental during tuberculosis [reviewed by (83)], this may explain how FAO can also contribute to Mtb survival. Conversely, interstitial macrophages were primarily glycolytic, which was shown to restrict mycobacterial growth (78), presumably due to the pro-inflammatory cytokine signals associated with glycolysis as well as the comparatively lower uptake of fatty acids by these cells. This is in agreement with several studies that demonstrate the requirement of glycolysis for Mtb growth control (84–86). Huang et al. (78) also showed that depletion of alveolar macrophages in Mtb-infected mice reduced bacterial burden, whereas depletion of the interstitial macrophage population was detrimental, resulting in enhanced bacterial survival. Thus, in this setting, alveolar macrophages appear to function as M2-like nutritionally permissive hosts in which mycobacteria can evade pro-inflammatory action and replicate relatively unperturbed, which is in contrast to the more growth-restrictive environment within pro-inflammatory interstitial macrophages. These data are supported by additional studies of alveolar or M2 macrophage depletion in animal models of pulmonary tuberculosis, which was associated with an enhanced Th1 response, reduced bacterial burden in the lung and protection against tuberculosis-induced lethality (87, 88). Granuloma formation was also found to be defective in mice deficient in alveolar macrophages, while the attraction and activation of T cells in the lung, as well as the numbers of polymorphonuclear cells, were enhanced (87). This is in contrast to the depletion of activated M1-like macrophages, which was detrimental and resulted in enhanced bacterial survival (88).
Such immunometabolic divergence of the two pulmonary macrophage populations in response to Mtb infection suggests that the developmental origin of granuloma macrophages plays a role in disease progression. Indeed, the role of ontogeny in macrophage functionality and metabolism during infectious insult has been discussed in a recent review (89). Furthermore, it should be noted that while the Warburg effect is considered to be primarily an in vitro phenomenon, the in vivo relevance of this bioenergetic phenotype is starting to emerge in the literature. Specifically, during the establishment of chronic Mtb infection in mice (up to 30 days after low-dose aerosol infection), transcriptomic and histological analysis of Mtb-infected lung tissue revealed a HIF-1α-dependent enhancement of glucose uptake and glycolysis, as well as lactate formation and export (84). This was coupled with a concomitant down-regulation of pyruvate dehydrogenase complex (PDC), TCA cycle enzymes and OXPHOS. Moreover, defects in macrophage glycolytic capacity have been associated with the enhanced susceptibility of cigarette smokers to Mtb infection (86). In this study, extracellular flux analysis of Mtb-infected human alveolar macrophages isolated from the bronchoalveolar lavage (BAL) fluid of smokers and non-smokers revealed an impairment of metabolic activity in the alveolar macrophages of the smokers, including reduced glycolytic response and spare respiratory capacity, which was accompanied by a weakened inflammatory response.
Biphasic Immunometabolic Response of Individual Mtb-Infected Macrophages
Further to the immunometabolic distinction between pulmonary macrophages of different lineages, increasing evidence points toward a time-dependent blend of M1 and M2 responses to Mtb infection within individual granuloma macrophages (90–92), which may further explain the paradox of alveolar macrophage functionality during infection. One such study utilized high-throughput capped analysis of gene expression (deepCAGE) technology to investigate the promoter-based transcriptional landscape of Mtb-infected macrophages (91). This work revealed drastic gene expression alterations that included up-regulation of genes involved in M1-related immune response and inflammation, as well as M2-related cell wounding and apoptosis. Furthermore, to delineate macrophage responses to Mtb infection, authors of a recent review (92) comprehensively analyzed the metabolic patterns reported in transcriptome databases and supplementary data files from studies of primary macrophage Mtb infection in the literature. The authors report on a biphasic response marked by a defensive M1 phenotype during the early phase of in vitro infection (up to 8 h post-infection), followed by a switch to an M2-driven adaptation/resolution phase as the infection progresses (24–48 h after infection). The early pro-inflammatory phase was characterized by upregulation of genes indicating a classical Warburg shift in metabolism, including Hif1α, as well as genes encoding glucose uptake transporters (GLUT1 and GLUT6), hexokinases (HK1 and HK2), phosphofructokinase liver (PFKL; from the phosphofructokinase-1 (PFK-1) family), 6-phosphofructo-2-kinase/fructose-2,6 biphosphatase 3 (PFKFB3; an essential enzyme from the PFK-2 family that is responsible for elevated glycolytic flux), and the major lactate secretion transporter member 4 (MCT4). Consistent with the profile of M1 macrophage polarization, this up-regulation of Warburg-associated genes was coupled with the downregulation of genes encoding mitochondrial enzymes and proteins, including the PDC, TCA cycle enzymes (aconitase 2 [ACO2], isocitrate dehydrogenase 2 [IDH2] and subunits of the succinate dehydrogenase [SDH] complex), as well as multiple components of respiratory chain complexes.
These findings are consistent with the current knowledge of the molecular mechanisms underpinning the metabolic switch in M1 macrophages, which are brought about by two distinct “breakpoints” in the TCA cycle (25). The first breakpoint occurs at the conversion of citrate to α-ketoglutarate, which is catalyzed by isocitrate dehydrogenase 1 (IDH1). IDH1 is downregulated 7-fold in M1 macrophages compared to non-polarized macrophages, while the ratio of citrate to α-ketoglutarate is tripled (46). Itaconate, generated from the citrate accumulated as a result of this metabolic break (93), is a powerful bactericidal agent produced by M1 macrophages that functions as a potent inhibitor of bacterial isocitrate lyase (ICL). ICL, an enzyme that facilitates retention of carbon from fatty acids via the glyoxylate shunt (94), has been implicated in the control of Mtb infection (95, 96) due to its requirement for fatty acid catabolism by the bacteria (96). In this study, Muñoz-Elías and McKinney show that deletion of the genes that encode two ICL isoforms in Mtb (icl1 and icl2) reduced growth and survival of the bacteria in murine macrophages and in human monocyte-derived macrophages, as well as the bacterial load in mouse lungs.
The second breakpoint in the TCA cycle occurs at the succinate-fumarate conversion step, which is catalyzed by SDH, as demonstrated by the accumulation of mitochondrial succinate in LPS-stimulated macrophages (36). Succinate accumulation occurs partially as a result of the aforementioned citrate-induced generation of itaconate, which downregulates SDH directly (97). Succinate can also be produced directly from glutamine in a TCA cycle-independent, γ-aminobutyric acid (GABA)-dependent manner via the GABA shunt (36, 46, 49, 50). Increasing evidence supports the role of succinate as an important metabolic signal linking metabolism and immunity (92, 98), as succinate has been shown to stabilize HIF-1α and its proinflammatory effects, in particular its induction of IL-1β expression (99, 100). In addition to the identification of genes involved in these classical pathways, Shi et al. (92) report the modulation of a diverse array of genes associated with a number of pro-inflammatory processes affected as a result of these TCA cycle breaks. Such processes include an augmented oxidative stress response coupled with an increase in antioxidant defense, as well as the synthesis of pro-inflammatory bioactive lipids (including long chain fatty acyl-CoAs, phospholipids and prostaglandins), and arginine uptake and metabolism.
Consistent with the metabolic profile of alternative macrophage activation, the adaptation/resolution phase transition in Mtb-infected macrophages was marked by gene expression changes signifying a reduction in glucose uptake and dampened glycolytic metabolism, with a concomitant recovery of the TCA cycle and OXPHOS (92). The latter coincided with induction of Pgc1b (92), which encodes PPAR-γ coactivator-1β (PGC-1β), a key player in mitochondrial biogenesis and oxidative metabolism that has been implicated in alternative macrophage activation (47). The PPAR-γ coactivator family of transcription factors (PGC-1) are potent anti-inflammatory regulators and enhancers of OXPHOS in various cell types, including macrophages, where retroviral transfection with PGC-1β drives non-polarized cells toward an anti-inflammatory M2 phenotype characterized by enhanced OXPHOS and arginase-I expression (47).
Studies focusing on the behavior of Mtb during its infection cycle are also suggestive of a biphasic immunometabolic response of individual macrophages to Mtb infection. Following macrophage invasion, Mtb undergoes a series of physiological adaptations that accompany distinct phases of its infection process, from initial infection to intra-macrophage adaptation and eventual establishment of successful, productive disease. Transcriptional profiling of Mtb, in conjunction with the use of a clock plasmid to measure bacterial replication and death rates, revealed a clear distinction in bacterial survival and response to host phagocyte function in a 2-week in vitro infection model encompassing this multi-phasic infection process (101). For the first 2 days post-infection of primary BMDMs, the bacteria encountered a “bottleneck” during which Mtb killing outweighed its relatively high replication rate (101); a finding that is emulated in vivo by rapid bacterial growth and pronounced bacterial killing in the mouse lung during the first 2 weeks of infection (102). Reduced survival of Mtb during early in vitro infection was attributed to Mtb stress due to the initial macrophage arsenal, inferred by up-regulation of Mtb genes involved in general stress response, carbon metabolism, oxidative stress, iron storage, as well as hypoxia and nitrosative stress (101). These findings are in accordance with an earlier transcriptomic dataset that was also acquired 2-day after Mtb infection of murine BMDMs (103).
The bottleneck observed by Rohde et al. (101) was followed by a period of reduced replication but enhanced bacterial survival (intracellular adaptation phase), which progressed over time to a period of extended growth resulting in established macrophage infection. Interestingly, only a subset of Mtb genes were upregulated early (by day 2 post-infection) and remained elevated over the remaining 2-week infection period, including genes involved in fatty acid and cholesterol metabolism, secreted antigens and regulators. Furthermore, many of the general stress response genes observed during early infection were markedly down-regulated during the adaptation and establishment phases. Such modifications of the Mtb response over time are consistent with an M1-M2 switch in macrophage activation, and suggest that Mtb exploits the proposed biphasic response of host macrophages in order to establish productive infection.
Foamy Macrophages and Lipid Metabolism in Tuberculosis
A characteristic feature of tuberculosis pathogenesis is the formation of foam cells (lipid-laden macrophages) that are associated with tubercle granuloma necrosis (11) due to their contribution to caseum formation, which is defined as an accumulation of necrotic debris at the core of the granuloma. The latter promotes inflammation, tissue injury, and the eventual cavitation of the granulomatous structure, resulting in transmission of live bacilli and tuberculosis disease [reviewed by (104)]. Although the role of foamy macrophages in the progression of tuberculosis is clear, the mechanisms controlling foam cell biogenesis remain ill-defined for this disease. However, a recent study using multiple Mtb-infection models has shed light on these mechanisms, as well as the lipid composition of tuberculosis foam cells (18). This work demonstrated that foamy macrophages in necrotizing granulomas in tuberculosis lung lesions accumulate triglycerides (TAG), and exhibit a multispecies TAG profile that is conserved in rabbits, non-human primates and humans. Elevated levels of TAG were also detected in Mtb-infected human monocyte-derived macrophages, and were accompanied by higher lipid content and enhanced expression of TAG biosynthesis genes. Mechanistically, this TAG accumulation was mediated by TNFR signaling via downstream activation of the caspase cascade and mTORC1. Inhibition of these pathways was shown to significantly reduce lipid content in these cells, and up-regulation of the pathways was also observed in transcriptomic data from human tuberculosis lung tissue (18). Interestingly, an involvement of mTORC1 was previously implied by histological analysis of a human tuberculosis lung sample, which revealed mTORC1 activation in foamy macrophages (105). Furthermore, this key metabolic sensor has been shown to promote lipogenesis, in particular TAG biosynthesis, in obesity, diabetes, cancer and neurodegenerative disorders, while blocking lipolysis and β-oxidation (106). Indeed, Mtb and other mycobacterial species induce mTOR in macrophages (107, 108), and rapamycin inhibition of mTOR has been shown to decrease mycobacterial viability (107).
It is also interesting to note that mycobacterial infection of macrophages induces the expression and activation of PPAR-γ (109), a hallmark of alternative macrophage activation and a master regulator of lipid metabolism that controls fatty acid uptake, storage and lipogenesis (21). PPAR-γ has been implicated in mycobacterial disease progression by modulating host cell metabolism toward lipid droplet formation, as well as diminishing the pro-inflammatory immune response to favor bacterial survival (109–113). Moreover, a link between mycobacterial virulence and host PPAR-γ expression and activation during infection has been proposed. For instance, the virulent H37Rv strain of Mtb was shown to induce PPAR-γ expression, and attenuated growth of virulent Mtb was observed in human macrophages following PPAR-γ deletion (111), as well as in the lungs of macrophage-specific PPAR-γ-deficient mice (113). In contrast, attenuated M. bovis bacillus Calmette-Guerin (BCG) up-regulated PPAR-γ to a lesser extent (111) and M. smegmatis, an avirulent mycobacterial strain, failed to induce PPAR-γ expression (110, 111). Taken together, these findings suggest that PPAR-γ may also contribute to foam cell biogenesis in tuberculosis granulomas. This may additionally explain the link between PPAR-γ and tuberculosis pathogenesis, which is suggested by the correlation between Mtb virulence and PPAR-γ activity. Furthermore, enhanced expression of PPAR-γ has been reported in adipogenesis, and this was shown to be mTOR-dependent (114, 115), which raises the question as to whether PPAR-γ plays a role in mTORC1-mediated foam cell formation in tuberculosis. Interestingly, PPAR-α, one of the three PPAR isoforms alongside PPAR-γ and PPAR-β and a key driver of fatty acid β-oxidation (116), was recently reported to play an essential role in host innate immune defense against Mtb and BCG (117). In this study, the PPAR-α-mediated antimycobacterial response of BMDMs was attributed to enhanced autophagy, lysosomal biogenesis and phagosome maturation, as well as suppression of exacerbated inflammation via activation of transcription factor EB (TFEB). Moreover, PPAR-α promoted lipid catabolism, mitochondrial respiration and fatty acid β-oxidation in mycobacteria-infected macrophages (117). Thus, it appears that PPAR-γ and PPAR-α play opposing roles during mycobacterial infection, which is due, in part, to their distinct effects on host lipid homeostasis.
AMPK is another key metabolic regulator that has gained traction in tuberculosis research, although the literature on its role in other granulomatous diseases is sparse. AMPK is an important coordinator of M2 polarization and lipid catabolism, and its effects can overlap, enhance or antagonize those of mTOR and the PPAR family [reviewed by (118)]. During Mtb infection, AMPK activation increases OXPHOS, FAO and also antimicrobial autophagy by interacting with PGC-1α, as well as inhibiting Mtb-induced mTOR activation (19, 20). It is well-established that autophagy constitutes a successful antimycobacterial host response (119), therefore it is no surprise that Mtb has developed mechanisms to protect itself against this process. One such mechanism is the induction of microRNA expression in macrophages that directly silence AMPK (20). A second mechanism could be the activation of mTOR (19, 120), which is a well-known inhibitor of autophagy (121, 122). Indeed, mTORC1 has been reported to inhibit PPAR-α (123), which may constitute a mechanism by which mTORC1 inhibits autophagy in Mtb-infected cells. In comparison, mTORC1 is known to enhance the expression of PPAR-γ (114, 115), which supports an interplay between mTORC1 and PPAR-γ in the formation of foamy macrophages during Mtb infection.
These findings highlight not only the importance of macrophage lipid metabolism in the pathogenesis of tuberculosis, but also the critical involvement of mTORC1 and PPAR-γ in the survival and maintenance of Mtb during disease progression. The additional identification of AMPK and PPAR- α as host protective metabolic signaling pathways further accentuates the important link between immunometabolic signaling and the outcome of granulomatous disease. An overview of the Mtb-macrophage interactions described in this section is provided in Figure 1.
Schistosomiasis: A Story of Eggs and Fats
The second major cause of infectious granulomas, schistosomiasis (or bilharzia), is an endemic tropical disease of significant morbidity, mortality and socioeconomic impact. Like other helminth-borne infections, schistosomiasis occurs mainly in the southern hemisphere, where it is considered endemic in over 50 countries and affects over 200 million people, making it the most significant parasitic infection after malaria (124). Schistosomiasis is transmitted to humans via the aquatic larvae of several geographically distinct species of the Schistosoma trematodes. The most prominent causative agents of human schistosomiasis are S. mansoni, S. japonicum, and S. haematobium, all of which employ freshwater snails as intermediate hosts. Upon subcutaneous infection with the swimming larval stage, known as cercariae, the worms mature in the lung over the course of a month. During this time, the infection elicits an acute type-1 inflammatory response, which, in the case of S. mansoni and S. japonicum, subsides when the adult schistosomes travel to the hepatic and mesenteric vasculature to mate and lay eggs (125). S. haematobium instead colonizes the urogenital tract. Egg deposition into perivascular tissues is accompanied by an acute type-2 response about 2 months post-infection, which finally becomes a lower-grade chronic disease marked by chronic pain, anemia, diarrhea, hepatomegaly and malnutrition (126). During this type-2 antihelminthic response, schistosome egg antigens induce rapid periovular granuloma formation that encases the eggs. Periovular granulomas protect the host from continuous exposure to toxic egg antigens and reduce immunopathology, but hepatic granulomas frequently become fibrotic if untreated, leading to portal hypertension and eventually liver cirrhosis with significant morbidity (127). Schistosome granulomas therefore have advantages and disadvantages for the host and their usefulness as a containment strategy has been discussed at length (128–130).
Cellular Composition of Schistosome Granulomas
Typically, periovular granulomas consist of alternatively activated M2 macrophages, Th2 CD4+ T cells and eosinophils (128). Although M2 macrophages are considered the key component of schistosome granulomas (131), granuloma composition is variable, with hepatic granulomas showing a higher cell heterogeneity and intestinal granulomas containing largely macrophages (132). Based on inverse proportions of eosinophils, macrophage numbers also appear to be higher in the granulomas of naturally-infected wild water rats (Nectomys squamipes) than in chronic granulomas of experimentally-infected mice (133), indicating that there may be significant differences between experimental and natural granuloma formation that must be taken into account. Schistosome egg-derived antigens such as omega-1 play a major role in driving a highly Th2-skewed antihelminthic immune response at 5–6 weeks after the initial infection, causing local CD4+ T helper cells to release IL-4 and IL-13 (134, 135). At the same time, intercellular adhesion molecule 1 (ICAM-1) is upregulated on sinusoidal endothelial cells surrounding newly deposited eggs (136). This milieu of cytokines and chemokines results in the T cell and STAT6-dependent recruitment of Ly6Chi monocytes to the periovular space, where they differentiate into granuloma macrophages with only a minor contribution from resident hepatic macrophages (131, 137–139). In the case of S. japonicum infection, parasite antigens can also signal via TLR2 to promote M2 polarization (140). Contrastingly, Tundup et al. (141) showed that the TLR co-receptor CD14 is highly upregulated in hepatic macrophages upon S. mansoni infection and acts as a crucial negative regulator of M2 polarization, possibly as part of a parasitic defense mechanism against granuloma formation (141). CD14, in turn, induces uptake of oxidized low-density lipoproteins (oxLDL), cholesterol and lipids into macrophages (142).
Lipid Metabolism and PPAR-γ-Signaling in Schistosomiasis
S. mansoni infection was recently linked to specific metabolic changes in hepatic macrophages, where granuloma formation around schistosome eggs was associated with differential lipid and cholesterol metabolism (143). This is supported by multiple studies that have highlighted the significance of PPAR-γ in the context of schistosomiasis. PPAR-γ is a hallmark of M2 polarization and globally regulates lipid uptake and metabolism (144, 145). It is activated by a multitude of immunometabolic ligands, including various unsaturated fatty acids, lipoproteins, eicosanoids, flavonoids and the amino acids glutamine and arginine (146). Although the precise role of PPAR-γ in macrophages depends on their lineage, polarization state and post-translational modifications (145, 147), PPAR-γ is generally considered to be an anti-inflammatory receptor known to limit M1 activation, for instance by transrepression and ubiquitination of NF-κB (145, 148). Importantly, lipids secreted from the tegument of S. mansoni adults were shown to directly activate PPAR-γ in macrophages, leading to upregulation of arginase-1 expression and other M2 markers in vitro (149). This study did not clarify whether this effect is only achieved in the presence of adult worms, or whether similar PPAR-γ-activating lipids are also found on the eggs. However, both live and inactivated S. mansoni eggs have been reported to induce a 7-fold increase in PPAR-γ expression in human liver cell cultures (150). PPAR-γ activation is a classical M2 macrophage marker and M2 macrophages are known to preferentially utilize FAO. While mice with a macrophage-specific PPAR-γ knockout show a downregulation of genes for both synthesis and oxidation of fatty acids in non-infectious settings (144), S. mansoni-infected human liver biopsies revealed a specific downregulation of FAO-related genes, including acetyl-CoA acyltransferase 2 (ACAA2) and acyl-CoA synthetase long-chain family member 1 (ACSL1) (151). Additionally, a secretory protein of S. japonicum inhibited PPAR-α, a key promoter of FAO, in a colitis mouse model (152), indicating that downregulation of FAO may be directed by the parasite itself. These findings support the notion that macrophage polarization during schistosomiasis is complex, with a potential decrease in FAO despite many classical M2 signatures (153).
It is now well-established that infection with S. mansoni alters host lipid metabolism globally by reducing total cholesterol, low-density lipoprotein (LDL) and triglycerides in the plasma of humans and apolipoprotein E (apoE)-deficient or high-fat diet-fed mice (154–156). In particular, PPAR-γ activation during schistosomiasis has been shown to counteract atherosclerosis and other high-fat diet-induced pathologies (157, 158). PPAR-γ has been strongly linked to these conditions, and mice with macrophage-specific PPAR-γ knockouts become susceptible to diet-induced obesity and insulin resistance (144). Peritoneal macrophages with a conditional PPAR-γ knockout have markedly reduced expression of cholesterol transport genes, such as the ATP-binding cassette transporters (ABC) A1 and G1, as well as reduced cholesterol efflux (157, 159, 160). Similar effects were shown in hepatic macrophages during schistosomiasis, where a recent study reports downregulation of a number of genes involved in cholesterol metabolism, including APOC1 and APOC3 (143), which are known contributors to inflammatory atherosclerosis (161, 162). A recent RNA interference study revealed that ApoC1 in particular is a key promoter of oxLDL cholesterol uptake into macrophages via the lectin-like oxLDL receptor-1 (LOX-1), which is in turn inhibited by PPAR-γ (163, 164). Thus, S. mansoni infection blocks macrophage oxLDL cholesterol uptake by inhibiting ApoC1 and ApoC3 and may at the same time facilitate cholesterol efflux via ABCA1 and ABCG1. This suggests that unlike in tuberculosis, schistosomiasis macrophages do not accumulate lipids (see Figure 2). In accordance with this, there are no reports to date of S. mansoni or S. japonicum leading to foam cell formation. The rarer S. mekongi, which does not promote fibrosis, appears to be the only member of its genus to induce foam cells, although this phenomenon has not yet been investigated further (165).
Mechanistically, S. mansoni infection leads to significant upregulation of CD14, which induces macrophage uptake of oxLDL cholesterol and lipids (141, 142). Additionally, PPAR-γ is known to mediate transcription of the Cd36 scavenger receptor gene in macrophages (166), which promotes uptake of oxLDL cholesterol and provides a stepping stone for the development of atherosclerosis (158). A PPAR-γ response element in the Cd36 gene means that PPAR-γ directly promotes CD36 transcription following PPAR-γ activation by oxLDL, constituting a positive feedback loop for cholesterol accumulation (158, 167, 168). In mice infected with S. mansoni while on an atherogenic high-fat diet, significant lipid uptake was found to be induced in the outermost cell layers of hepatic periovular granulomas; however, the plasma ratio of HDL to LDL was still improved (156). Unfortunately, this study did not determine which cells were responsible for the increased lipid uptake. However, as the experiments were performed only 7 weeks after S. mansoni infection, when granulomas are still somewhat immature and not yet associated with additional leukocytes (128), it is likely that the responsible cells were either eosinophils or macrophages. Another study showed that S. mansoni infection can induce lipid uptake and retention in hepatic stellate cells (150). Therefore, the lipid droplet-positive cells identified by Stanley et al. (156) could be non-granulomatous hepatic cells, although this would not account for their circular distribution around the granulomas. Since lipid uptake was only induced in the outermost cell layers of granulomas (156), there may be an as-of-yet unknown significance of physical proximity between the egg and the surrounding macrophages. While it is known that female schistosomes take up large amounts of fatty acids in order to produce eggs, it is not established whether eggs, which themselves contain large amounts of fatty acids, could extract and ingest lipids from surrounding macrophages (169, 170). It may be the case that CD36-induced oxLDL uptake, while pro-atherogenic in arterial walls, allows some sequestration of oxLDL cholesterol in non-migratory macrophages, thus contributing to the anti-atherogenic effect of schistosomiasis (171).
Overall, S. mansoni is characterized by modifications in the PPAR-γ network of lipid metabolism, during which oxLDL cholesterol uptake via ApoC1 and ApoC3 is directly suppressed, while uptake via CD14 and CD36 may be enhanced due to PPAR-γ signaling. Since PPAR-γ can directly activate multiple HDL cholesterol efflux channels, and there appears to be limited lipid accumulation and no evidence of foam cell formation in schistosome macrophages, this suggests that there may be a significant efflux of cholesterol from granuloma macrophages during schistosomiasis. The expulsion of HDL cholesterol could explain the anti-diabetic and anti-atherogenic effects observed in response to PPAR-γ agonists such as rosiglitazone (172–174).
PPAR-γ in Schistosoma-Induced Fibrosis
Macrophage lipid metabolism may also be involved in the formation of fibrosis, the major pathology of chronic schistosomiasis, as suggested by several studies using pharmacological PPAR-γ induction. For instance, in a mouse model of S. japonicum-induced liver fibrosis, the PPAR-γ agonist rosiglitazone was able to reduce liver fibrosis and extracellular matrix (ECM) deposition, which was attributed to decreased inflammatory signaling (175). Although this study did not link these effects to granuloma macrophages, but rather to hepatic stellate cells and myofibroblasts, ECM deposition and local synthesis have been described as key components in both sarcoid and infectious lung granulomas (176). Similar to the effects of rosiglitazone, the PPAR-γ agonist pioglitazone reduced hepatic and splenic histopathology in a mouse model of S. japonicum infection by increasing the proportion of regulatory T cells and inducing the polarization of mannose receptor-positive M2 macrophages (177). Another PPAR-γ agonist, telmisartan, reduced both hepatic fibrosis and granuloma diameter in S. mansoni-infected mice, although it did not synergistically increase the efficacy of praziquantel treatment, an antihelminthic drug commonly used to treat schistosomiasis (178). These findings may seem contradictory, seeing as PPAR-γ is known to induce M2 polarization, which is necessary for host survival during initial infection (179, 180), and also contributes to fibrosis by promoting fibroblast hyperactivity through TGF-β signaling (181, 182). At the same time, pharmacological activation of PPAR-γ has been shown multiple times to decrease histopathology and fibrosis in schistosomiasis and some renal pathologies (183). Where PPAR-γ agonists have failed to ameliorate fibrosis, this has been speculatively attributed to the simultaneous activation of pro-fibrotic M2 macrophages (184, 185). It is therefore likely that this dual role of PPAR-γ is due to its activity in various cell types. For instance, activation and overexpression of PPAR-γ has been shown to act directly on both human and mouse fibroblasts to decrease fibrosis by reducing growth factor expression, mitosis, collagen secretion, and responsiveness to TGF-β (186, 187).
While these studies do not explicitly link the anti-fibrotic effects of different PPAR-γ agonists to immune cell lipid metabolism, it is clear that PPAR-γ plays a significant role in schistosomiasis pathogenesis and future work investigating how macrophage lipid metabolism affects fibrosis should prove interesting. Taken together, it is becoming apparent that Schistosoma infection has highly complex consequences for lipid metabolism, at both the cellular and global level (summarized in Figure 2), and more work is required to elucidate the exact metabolic pathways that characterize schistosome granulomas.
Sarcoidosis: A Disease Lacking an Immunometabolic Switch?
Unlike tuberculosis and schistosomiasis, which are triggered by known pathogens and are typically organ-specific, sarcoidosis is an enigmatic multi-systemic disease of unknown origin. It is characterized by the development and accumulation of epithelioid, non-caseating (non-necrotic) granulomas typically found in the lungs; however, sarcoid granulomas can present almost anywhere in the body, with other notable sites including the eyes, skin and lymph nodes (188). The disease is increasingly difficult to treat once it develops from a self-limiting to progressive state, with pulmonary and cardiac involvement representing the most frequent causes of patient morbidity and mortality (189). Due to the unknown etiology of sarcoidosis, there is currently no therapeutic approach targeting the pathogenetic mechanisms (190). However, the occurrence of familial forms of the disease (191, 192) suggests that a genetic background may play a pathological role, and pine pollen (193), microbial infection (specifically P. acnes and mycobacteria) (5) as well as air pollutants (comprising mineral, micro or nanoparticles) (3) are increasingly regarded as strong environmental trigger candidates (188, 194, 195). Pollution, in particular, gained momentum among clinicians and biologists when a recrudescence of sarcoidosis was observed in the aftermath of the World Trade Center tragedy in subjects exposed to particulate matter (3). Although the exact relative contributions of genetic and environmental factors are unknown, it has been suggested that genetic factors account for 66% of disease susceptibility in monozygotic twins (191).
Immunological Profile of Sarcoidosis
At the cellular level, sarcoid granulomas are characterized by a strong Th1/Th17 phenotype (196). Once again, this sets sarcoidosis apart from tuberculosis and schistosomiasis, which are both marked by an acute Th1 and M1 phase that later progresses to a predominantly M2 phenotype. It has long been known that the pro-inflammatory milieu of IL-12, IL-17, TNFα, and IFNγ upregulate adhesion molecules on macrophages to promote aggregation, cell-to-cell contact and fusion (197, 198). In 2011, however, macrophages and multinucleated giant cells from granulomas of patients with systemic neuromuscular sarcoidosis were shown for the first time to be M2-polarized with high CCL18 expression and resistance to conversion by Th1 cytokines (199). More recently, immunohistochemical analysis also revealed M2 macrophage activation in lung and lymph node samples from pulmonary sarcoidosis patients (200). Advanced sequencing techniques confirmed that a CD163-positive macrophage fraction of peripheral blood mononuclear cells (PBMCs), isolated from sarcoidosis patients and treated with purified protein derivative (PPD), exhibits a partial M2 profile with upregulation of IL-13 downstream pathways (201, 202). Furthermore, the pro-inflammatory cytokine IL-17, well-established in sarcoidosis pathology, has also been shown to induce an M2-like phenotype in macrophages (203, 204). It is important to note that sarcoidosis is frequently linked to clinical anergy, which presents as the loss of skin test reactivity to PPD and other antigens in sarcoidosis patients. While CD4+ T cells and dendritic cells have been implicated in this anergic response [reviewed by (205)], the findings described above suggest that anti-inflammatory macrophages may also contribute to the paradoxical diminished immunity often observed in sarcoidosis patients.
Dysregulation of Lipid Metabolism in Sarcoidosis
The M2 profile of macrophages reported for some sarcoid granulomas may also be associated with the expression and activity of PPAR-γ, as PPAR-γ deficiency was observed in alveolar macrophages of pulmonary sarcoidosis patients (206) and its expression was shown to negatively correlate with disease severity (207). Furthermore, polymorphisms in the Pparg gene and the gene encoding its transcriptional coactivator PPAR-γ coactivator 1-α (Ppargc1a) were identified at a higher frequency in sarcoidosis patients compared with healthy subjects (208). Thus, a genetic defect in PPAR-γ signaling may be a predisposing factor for the development of severe sarcoidosis. Additional work utilizing diverse mouse models supports the role of PPAR-γ in lung immunopathology (157, 159, 209–212). In one such study employing a multiwall carbon nanoparticle (MWCNT) model, which recapitulates the chronicity of human granulomas (211), PPAR-γ expression and activity was significantly reduced in alveolar macrophages following oropharyngeal instillation of MWCNT in wild type animals. Accordingly, increased pulmonary granuloma formation, as well as expression of pro-inflammatory markers in granulomatous lung tissue and BAL, were observed in macrophage-specific PPAR-γ-deficient mice (termed PPAR-γfl/fl, Lyz2-Cre) (153). Moreover, increased numbers of Th1 lymphocytes were observed in BAL fluid extracted from PPAR-γfl/fl, Lyz2-Cre mice compared to wild type controls. PPAR-γ deficient BAL cells also displayed elevated expression of inducible nitric oxide synthase (iNOS) and IFN-γ, as well as Th1-associated cytokines (209). Reconstitution of PPAR-γ by lentiviral transduction in the same study significantly reduced the expression of pro-inflammatory mediators and decreased the number of BAL lymphocytes by 90%. Taken together, these data suggest an important role of PPAR-γ in the regulation of pulmonary inflammation and maintenance of lung homeostasis.
As mentioned earlier, chronic inflammation typically triggers a heightened activation state in fibroblasts, lending to substantial deposition of ECM components at the site of injury and consequent development of fibrosis (213, 214). Thus, PPAR-γ deficiency in sarcoid granulomas of patients presenting severe forms of the disease may play a role in the characteristic Th1/M1 bias, and consequently the development of fibrosis that is typically associated with disease pathogenesis. This notion correlates with the observation that NF-κB activation is increased in BAL samples from sarcoidosis patients (215). As described previously in this review, transrepression of NF-κB by PPAR-γ is well-established, thus increased and/or uncontrolled activation of NF-κB as a result of PPAR-γ deficiency could be one mechanism by which continuous inflammation occurs. Indeed, in a study coupling a computational model of granuloma formation and function, termed GranSim (216), with macrophage polarization data from non-human primate tuberculosis granulomas, continuous or increased NF-κB signaling was shown to exacerbate inflammation, resulting in uncontrolled bacterial growth and dissemination (68).
Mechanistically, PPAR-γ maintains pulmonary lipid homeostasis via alveolar macrophage liver X receptor-alpha (LXR-α) and ABCG1 (217), which, alongside ABCA1, is critical for macrophage efflux of cholesterol and phospholipids (218). Alveolar macrophages from sarcoidosis patients and mice following MWCNT instillation show diminished expression of ABCG1 and ABCA1, and the deficiency of these transporters in MWCNT-instilled mice correlates with increased alveolar macrophage lipid accumulation (210). In accordance with these findings, activation of the PPARγ-ABCG1 pathway by the PPARγ agonist rosiglitazone tempers MWCNT-induced granulomatous inflammation by significantly attenuating alveolar macrophage activation, pulmonary granuloma formation and pulmonary lipid dysregulation (212). Thus, the consequence of PPAR-γ deficiency in sarcoid granuloma macrophages appears to be manifold, resulting in both an uncontrolled inflammatory response and dysregulation of macrophage lipid metabolism.
Indeed, a number of proteins involved in lipid metabolism have been identified as contributing factors in the pathogenesis of sarcoidosis, including apoA1, fatty acid-binding protein 4/perilipin 2, 8-isoprostane, zinc-α2 glycoprotein and serum amyloid A (SAA) (219). In particular, SAA, a highly inducible acute-phase reactant and amyloid precursor protein (220), is a well-known modulator of the innate immune response, inflammation and apolipoprotein metabolism (221), and it has been suggested as a potential biomarker for sarcoidosis due to its significantly higher serum concentrations in patients vs. healthy subjects (222). However, SAA is not a diagnostic gold standard as it is also elevated in a number of other inflammatory conditions, namely arthritis and systemic lupus erythematosus (223). In tissue samples from sarcoidosis patients, SAA was shown to localize to macrophages and giant cells within granulomas, but it also correlated with the number of CD3+ cells and a local Th1 response (224). In this study, SAA was shown to promote chronic inflammation in sarcoid granulomas via TLR2 signaling and activation of NF-κB, as well as cytokine production (224). Contrastingly, recent evidence suggests that during inflammation, SAA acts synergistically with secretory phospholipase-A to remove cell membrane debris, which suggests a partial involvement in anti-inflammatory repair processes (225). Interestingly, SAA has also been suggested to be responsible for the low HDL cholesterol and apoA1 levels observed in patients with active sarcoidosis (226, 227), which has been linked to an increased risk of atherosclerosis in sarcoidosis patients (219). This is in contrast to schistosomiasis, which has been reported to counteract atherosclerosis by altering global host lipid metabolism and reducing serum cholesterol levels (154).
Metabolic Signaling as a Driver of Sarcoidosis Disease Progression
As mentioned previously in this review, Linke et al. (15) identified an involvement of macrophage-specific mTORC1 signaling in the initiation and maintenance of granulomas. In this study, constitutive activation of mTORC1 in murine macrophages was achieved via myeloid-specific deletion of the gene encoding its upstream inhibitor tuberous sclerosis complex 2 (Tsc2) (termed Tsc2fl/fl, Lyz2-Cre mice). This genotype induced hypertrophy and enhanced cell proliferation in macrophages while reducing their apoptotic capacity. As a result, the Tsc2fl/fl, Lyz2-Cre mice exhibited spontaneous formation of non-caseating (non-necrotic), epithelioid granulomas that were observed in multiple organs. In the lung specifically, the granuloma macrophages were shown to consist of M2-like alveolar macrophages. Thus, the disease pathology seen in the Tsc2fl/fl,Lyz2-Cre mice strongly resembles the histological phenotype of sarcoidosis. Mechanistically, genes involved in both glycolysis and OXPHOS were enriched in transcriptomic datasets from Tsc2fl/fl,Lyz2-Cre BMDMs compared with Tsc2 floxed control (termed Tsc2fl/fl) BMDMs, and the enhancement of both metabolic pathways was confirmed by extracellular flux analysis. Furthermore, the uptake of glucose was higher in Tsc2fl/fl,Lyz2-Cre BMDMs and absolute glucose levels were decreased in both Tsc2-deficient macrophages as well as in the lungs of Tsc2-deficient animals, while mitochondrial mass and mitochondrial spare respiratory capacity were elevated (15). These findings are in accordance with the identification of increased levels of pyruvate in sarcoidosis patient sera, which is indicative of enhanced glycolytic activity (228). This study also reported an increase in serum metabolites that indicate enhanced mitochondrial FAO, as well as a decrease in serum levels of the key TCA cycle intermediate succinate (228). RNA-Seq data from sarcoidosis patient monocytes further revealed a dysregulation of OXPHOS and FAO pathways (229). Interestingly, the metabolic alterations described by Linke et al. were shown to be CDK4-dependent and crucial for the enhanced proliferation and reduced apoptosis of Tsc2-deficient macrophages. This study additionally identified mTORC1 activation, macrophage proliferation and glycolysis as hallmarks of disease progression in human sarcoidosis patients (15). Clinical involvement of mTORC1 has since been substantiated by its recent identification in RNA-Seq gene set enrichment data from cutaneous sarcoidosis patients (230), as well as whole exome sequencing and pathogenicity network analysis of familial cases of sarcoidosis (231). It should also be noted that successful treatment of a sarcoidosis patient with the mTOR inhibitor rapamycin has previously been reported (232). However, the molecular mechanisms underpinning mTOR involvement in human sarcoidosis remain to be elucidated.
Among other pathways, the involvement of mTORC1 points to a role of glycolytic metabolism in sarcoidosis pathogenesis. Importantly, the PI3K/Akt/mTOR axis, and mTORC1 specifically, have been shown to promote the production of the key glycolytic regulator HIF-1α irrespective of oxygen concentrations (233–235). In accordance with this, a recent study demonstrated elevated protein levels of HIF-1α, as well as HIF-1α signaling pathway components such as HIF-1β, HIF-2α, and p300, in alveolar macrophages from sarcoidosis patients cultured under normoxic conditions (236). HIF-1α protein expression was further confirmed in granulomatous lung tissue from sarcoidosis patients, and was found to be localized to alveolar macrophages and multinucleated giant cells (236). As described previously, HIF-1α promotes pro-inflammatory macrophage functions by activating glycolytic enzymes and stimulating the production of IL-1β (36). Indeed, Talreja et al. (236) demonstrated that in alveolar macrophages from sarcoidosis patients, increased levels of HIF-1α correlated with augmented Glut1 protein expression and elevated levels of IL-1β. Furthermore, siRNA inhibition of HIF-1α in patient PBMCs significantly diminished the production of IL-1β, IL-17 and IL-6 (236). Thus, HIF-1α signaling appears to play a critical role in the pro-inflammatory milieu that defines sarcoidosis pathology, and provides an explanation for the enhanced glycolysis reported in the aforementioned studies.
These findings highlight the complexity of the metabolic landscape of granuloma macrophages both in vivo and in human disease. In particular, they emphasize the oversimplification of Warburg metabolism in M1 macrophages, which is classically defined by a simultaneous increase in glycolysis and decrease in OXPHOS. This accentuates the importance of future work that examines more closely the complexity of macrophage metabolism in vivo and in the context of individual human diseases. This is, however, in contrast to Mtb infection, during which the Warburg-like immune response has been documented and supported by in vivo data (84). However, this difference may simply be due to the infectious nature of Mtb and a typical pro-inflammatory reaction to initial infection, which is absent in sarcoidosis. It is also important to note that some of the sarcoidosis studies mentioned in this section utilized either patient PBMCs or patient sera, and therefore describe the peripheral/global metabolic alterations associated with sarcoidosis. The role of each of the identified metabolic pathways within the sarcoid granuloma environment, and their contribution to sarcoid granuloma macrophage function specifically, still has to be assessed. Nevertheless, the observations that glycolysis, OXPHOS and FAO may all occur simultaneously during sarcoidosis disease progression, and that these pathways are associated with both pro- and anti-inflammatory functions, may somewhat explain the paradoxical immunoregulation and anergy that are frequently associated with sarcoidosis.
An overview of the findings described in this section is provided in Figure 3.
Common and Distinct Metabolic Features of Tuberculosis, Schistosomiasis, and Sarcoidosis
PPAR-γ signaling and dysregulated lipid metabolism are the overriding common features of each disease discussed in this review. However, these pathways are distinctly modulated depending on the disease, as well as disease severity. Such differences may be due to the granuloma-inciting agent and, in particular, the ability of mycobacteria and Schistosoma species to manipulate host macrophage responses to promote their own survival. For instance, both tuberculosis and schistosomiasis are defined by an acute inflammatory phase followed by a pathogen-induced shift toward M2-like macrophage polarization, marked by the activation of PPAR-γ. In tuberculosis, PPAR-γ activation appears to be virulence-dependent, leading to lipid droplet accumulation and consequent foam cell formation that are associated with the development of necrosis, which is characteristic of tuberculosis pathogenesis. However, in schistosomiasis there appears to be only minor CD14/CD36-driven lipid accumulation that is confined to certain areas of the granuloma, with a potential efflux of cholesterol from macrophages and no reports of foam cell formation or a correlation with pathogenicity for the major Schistosoma species. This is further compounded by the up-regulation of FAO in Mtb-infected macrophages compared to its down-regulation in Schistosoma-infected livers, which may, in part, constitute a protective mechanism in tuberculosis foamy macrophages to counteract some of the lipid accumulation that occurs during infection. In contrast to tuberculosis and schistosomiasis, sarcoidosis exhibits defective or deficient PPAR-γ signaling that is associated with disease severity. However, this is not surprising considering the critical role of PPAR-γ in the M1-M2 metabolic switch in macrophages, and the chronic inflammatory nature of sarcoid granulomas in comparison to tuberculosis and schistosomiasis. Furthermore, the expression of SAA, which contributes to chronic inflammation, is greater in sarcoidosis than in other granulomatous diseases (224). SAA has also been associated with the increased prevalence of atherosclerosis in sarcoidosis patients by lowering serum levels of HDL and apoA1. This is again in contrast to schistosomiasis, which has been shown to reduce atherogenesis potentially due to the expulsion of HDL cholesterol from schistosome granuloma macrophages. This may be linked to enhanced PPAR-γ expression during Schistosoma infection that will, in turn, lead to increased expression of the cholesterol transporters ABCA1 and ABCG1, thus enabling HDL cholesterol efflux. Whereas, down-regulation of PPAR-γ, and accordingly ABCA1 and ABCG1, in macrophages from sarcoidosis patients and mice imply a decrease in the efflux of HDL cholesterol from these macrophages. Interestingly, FAO is also up-regulated in sarcoidosis (228), which may again constitute a homeostatic response of sarcoid granuloma macrophages to the increased lipid accumulation that occurs due to PPAR-γ deficiency. These findings highlight the importance of PPAR-γ in the control of lipid homeostasis, and how its dysregulation in a disease scenario can have immunometabolic consequences that directly impact macrophage effector functions and disease outcome.
In further support of the involvement of macrophage metabolic signaling in granulomatous disease progression, macrophage mTORC1 has recently been implicated in tuberculosis and sarcoidosis pathogenesis. However, the metabolic consequences of mTORC1 activation in each case appears to be distinct. During Mtb infection, this key metabolic sensor plays a role in foamy macrophage formation, whereas in sarcoidosis mTORC1 promotes OXPHOS and glycolysis. As mTOR is a key intracellular nutrient sensor, these differences suggest that macrophages in tubercle and sarcoid granulomas may have a distinct nutritional content, which may again be due to the ability of Mtb to manipulate host cells to promote its own survival. On that note, Mtb-induced dysregulation of autophagy in macrophages is an established mechanism by which Mtb evades the host immune response. Interestingly, a link between mTOR and autophagy was recently proposed in familial cases of sarcoidosis (231). Therefore, the role of mTOR in these diseases may in fact be manifold, and the connection between mTOR and autophagy in both tuberculosis and sarcoidosis suggests that this could be a key molecular pathway in the pathogenesis of granulomatous diseases. In schistosomiasis, however, very little is known about the function of mTOR. In dendritic cells, which play a major role in Th2 priming, mTOR inhibition by both rapamycin and torin-1 has been shown to increase IL-4 expression (237). However, while schistosome infection leads to an M2/Th2 profile shift in dendritic cells, the parasite antigens appear to do so in an mTOR-independent manner (237). One study reports that 90 % of mTOR pathway genes were downregulated in liver biopsies from human schistosomiasis japonica patients (151), even though in vitro work suggests that IL-13 induced by parasitic infections may enhance the expression of the mTORC2 protein Rictor (238). mTOR expression is also enhanced in S. haematobium-associated bladder cancer, although this may be a general feature of malignancy rather than schistosomiasis (239). Recently, mTOR signaling in myeloid cells has also emerged as an attractive target for the treatment of hepatic fibrosis (240, 241).
Future Perspectives
While research on the immunometabolic features of the pathogenesis of granulomatous diseases is developing, particularly in the case of tuberculosis, much more work is required to further our understanding of the exact roles of the different metabolic pathways in each disease. As this review highlights, the metabolic plasticity of macrophages allows for distinct metabolic phenotypes of individual granulomas that are highly dependent on the inciting agent. Identifying the key common and distinct features will not only be critical in defining potential therapeutic targets in the future, but may also provide an insight into how we could control the more enigmatic forms of granulomatous disease, such as sarcoidosis and Crohn's disease, for which the etiological triggers remain elusive. In tuberculosis and schistosomiasis, for example, the up-regulation of PPAR-γ results in a controlled immune response that prevents against exacerbated tissue damage by inducing an M2-like macrophage polarization state. While this role of PPAR-γ can be detrimental for pathogen clearance by the host in the case of infectious granulomas, it points toward a potential mechanism by which the chronic inflammation in sarcoidosis could be alleviated. Evidence for a role of the other PPAR isoforms (PPAR-α and PPAR-β) in granulomas of schistosomiasis and sarcoidosis is sparse in the literature and needs to be assessed in more detail. This is especially relevant considering that in tuberculosis the observed antimycobacterial function of PPAR-α is in direct contrast to the implicated function of PPAR-γ in mycobacterial disease progression, as well as the role of PPAR-α in promoting autophagy in Mtb-infected cells. While the specific significance of PPAR-α has not yet been studied in schistosomiasis, Sj16, an S. japonicum secretory protein, has been shown to inhibit PPAR-α (152). This lends weight to the notion that PPAR-α may play a role in schistosomiasis, and one that may also contrast with PPAR-γ. Future research should aim to examine the precise role(s) of the different PPARs in granulomatous disease, which may further our understanding of the complex lipid metabolism that is observed in each of the diseases discussed in this review. Because of the emerging significance of PPAR-γ in particular, it is also important to reiterate its well-established link with mTOR [e.g., (242, 243)]. This connection suggests that research directed at determining the precise role of mTOR in schistosomiasis should prove fruitful in the future and could highlight pathways of potential significance to tuberculosis and sarcoidosis.
AMPK could, unfortunately, not be assessed for a comparison between the granulomatous diseases discussed in this review, as it has been described almost exclusively for tuberculosis. However, while there is no research to date on the role of AMPK in sarcoidosis, IL-7-induced AMPK signaling in schistosomiasis japonicum has been shown to counteract macrophage autophagy and potentiate liver damage (244). This is in direct contrast with the multiple reports of AMPK promoting macrophage autophagy during mycobacterial infection (20). Nevertheless, AMPK could prove a valuable component of granuloma immunometabolism as it has been linked to both PPAR-γ (245) and mTOR (118, 246). In cancer cell lines, for instance, AMPK and AMPK activators such as metformin have an inhibitory effect on PPAR-γ activity (247). In rat liver samples, AMPK activation was shown not only to suppress PPAR-γ activity, but also to decrease fatty acid synthesis while enhancing the beta-oxidation enzyme carnitine palmitoyltransferase (248). While it remains to be seen whether these findings are translatable into granuloma research, AMPK should prove an interesting target for future research.
The comparison between schistosomiasis and tuberculosis highlights an additional key difference relating to the structure of their respective granulomas and the ontogeny of the participating macrophages, which are likely influenced by the respective pathogens. For instance, tuberculous granulomas differ greatly based on the stage of disease, whereas the composition of schistosome granulomas depends on where the eggs are deposited. Additionally, in tuberculosis, granulomas appear to involve more tissue-resident pulmonary macrophages, while schistosome granulomas consist almost exclusively of monocyte-derived macrophages. Therefore, it will be interesting to investigate the activation and metabolic programming of macrophages dependent on the local environment of the granuloma vs. macrophage ontogeny. Metabolic differences have also been shown within the layers of individual granulomas, so the metabolic profiles of macrophages and/or the additional immune cells of the granuloma dependent on their spatial orientation within the granulomatous structure will also require characterization. This can also be applied to the different pathological structures of granulomas, particularly fibrotic, foam cell-containing and necrotic granulomas. Deciphering the metabolic pathways underlying the formation of these distinct structures will allow us to determine why some granulomas are more effective than others, and perhaps how to redirect granulomas toward a less harmful phenotype.
Finally, it is important to note that there is a significant epidemiological overlap between tuberculosis, HIV, malaria and schistosomiasis (249). It would therefore be interesting for future research to consider a schistosomaiasis-tuberculosis co-infection approach. Even in urban settings of the southern hemisphere, studies report that over 60% of Mtb-exposed children also suffer from a helminth infection, the vast majority of which are caused by Schistosoma species (250). Furthermore, it was recently shown that infection with S. haematobium induces long-term, persistent epigenetic alterations resulting in a weakened inflammatory response and increased susceptibility to tuberculosis (251). Hence, research on tuberculosis therapies and vaccine candidates has made a point to assess the effect of Schistosoma species on tuberculosis disease progression (252). As both pathogens form granulomas but affect macrophage metabolism in a vastly different manner, it would be interesting to analyze granuloma formation in co-infection settings, particularly with regard to lipid metabolism.
Overall, the findings highlighted in this review demonstrate the importance and complexity of immunometabolic signaling in granulomatous diseases of different etiology. This emphasizes the need for future research that deciphers more closely the contribution of different metabolic pathways to each individual disease, as we all as the regulation of these pathways by PPARs, mTOR, and AMPK. Furthermore, it is paramount that the role of key metabolic pathways and regulators are then verified in vivo, and where possible, by human studies. Building comprehensive metabolic networks that define granuloma macrophage function will enable us to identify novel therapeutic targets in the future.
Author Contributions
JW conceived of, and with HM wrote, reviewed and edited the manuscript. TW reviewed and edited the manuscript.
Conflict of Interest
The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
Footnotes
Funding. TW was supported by grants from the Austrian Science Fund (FWF) P27701-B20 and P30857-B28, by the Vienna Science and Technology Fund (WWTF) LS18-058, and by the Foundation for Sarcoidosis Research.
References
- 1.Adams DO. The granulomatous inflammatory response. A review. Am J Pathol. (1976) 84:164–92. [PMC free article] [PubMed] [Google Scholar]
- 2.Kaye P. Granulomatous diseases. Int J Exp Pathol. (2000) 81:289–90. 10.1046/j.1365-2613.2000.00171.x [DOI] [PMC free article] [PubMed] [Google Scholar]
- 3.Izbicki G, Chavko R, Banauch GI, Weiden MD, Berger KI, Aldrich TK, et al. World Trade Center “sarcoid-like” granulomatous pulmonary disease in New York City Fire Department rescue workers. Chest. (2007) 131:1414–23. 10.1378/chest.06-2114 [DOI] [PubMed] [Google Scholar]
- 4.Anderson JM, Rodriguez A, Chang DT. Foreign body reaction to biomaterials. Semin Immunol. (2008) 20:86–100. 10.1016/j.smim.2007.11.004 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 5.Esteves T, Aparicio G, Garcia-Patos V. Is there any association between Sarcoidosis and infectious agents? a systematic review and meta-analysis. BMC Pulm Med. (2016) 16:165. 10.1186/s12890-016-0332-z [DOI] [PMC free article] [PubMed] [Google Scholar]
- 6.Turk JL, Narayanan RB. The origin, morphology, and function of epithelioid cells. Immunobiology. (1982) 161:274–82. 10.1016/S0171-2985(82)80083-1 [DOI] [PubMed] [Google Scholar]
- 7.Cronan MR, Beerman RW, Rosenberg AF, Saelens JW, Johnson MG, Oehlers SH, et al. Macrophage epithelial reprogramming underlies mycobacterial granuloma formation and promotes infection. Immunity. (2016) 45:861–76. 10.1016/j.immuni.2016.09.014 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 8.Helming L, Gordon S. The molecular basis of macrophage fusion. Immunobiology. (2007) 212:785–93. 10.1016/j.imbio.2007.09.012 [DOI] [PubMed] [Google Scholar]
- 9.Helming L, Gordon S. Molecular mediators of macrophage fusion. Trends Cell Biol. (2009) 19:514–22. 10.1016/j.tcb.2009.07.005 [DOI] [PubMed] [Google Scholar]
- 10.Herrtwich L, Nanda I, Evangelou K, Nikolova T, Horn V, Sagar Erny D, et al. DNA damage signaling instructs polyploid macrophage fate in granulomas. Cell. (2016) 167:1264–80.e18. 10.1016/j.cell.2016.09.054 [DOI] [PubMed] [Google Scholar]
- 11.Peyron P, Vaubourgeix J, Poquet Y, Levillain F, Botanch C, Bardou F, et al. Foamy macrophages from tuberculous patients' granulomas constitute a nutrient-rich reservoir for M. tuberculosis persistence. PLoS Pathog. (2008) 4:e1000204. 10.1371/journal.ppat.1000204 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 12.Petersen HJ, Smith AM. The role of the innate immune system in granulomatous disorders. Front Immunol. (2013) 41:20 10.3389/fimmu.2013.00120 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 13.Pagán AJ, Ramakrishnan L. The formation and function of granulomas. Annu Rev Immunol. (2018) 36:639–65. 10.1146/annurev-immunol-032712-100022 [DOI] [PubMed] [Google Scholar]
- 14.Pagán AJ, Ramakrishnan L. Immunity and immunopathology in the tuberculous granuloma. Cold Spring Harb Perspect Med. (2014) 5:a01849. 10.1101/cshperspect.a018499 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 15.Linke M, Pham HTT, Katholnig K, Schnöller T, Miller A, Demel F, et al. Chronic signaling via the metabolic checkpoint kinase mTORC1 induces macrophage granuloma formation and marks sarcoidosis progression. Nat Immunol. (2017) 18:293–302. 10.1038/ni.3655 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 16.Laplante M, Sabatini DM. mTOR signaling in growth control and disease. Cell. (2012) 149:274–93. 10.1016/j.cell.2012.03.017 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 17.Weichhart T, Hengstschläger M, Linke M. Regulation of innate immune cell function by mTOR. Nat Rev Immunol. (2015) 15:599–614. 10.1038/nri3901 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 18.Guerrini V, Prideaux B, Blanc L, Bruiners N, Arrigucci R, Singh S, et al. Storage lipid studies in tuberculosis reveal that foam cell biogenesis is disease-specific. PLoS Pathog. (2018) 14:e1007223. 10.1371/journal.ppat.1007223 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 19.Yang C-S, Kim J-J, Lee H-M, Jin HS, Lee S-H, Park J-H, et al. The AMPK-PPARGC1A pathway is required for antimicrobial host defense through activation of autophagy. Autophagy. (2014) 10:785–802. 10.4161/auto.28072 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 20.Ouimet M, Koster S, Sakowski E, Ramkhelawon B, van Solingen C, Oldebeken S, et al. Mycobacterium tuberculosis induces the miR-33 locus to reprogram autophagy and host lipid metabolism. Nat Immunol. (2016) 17:677–86. 10.1038/ni.3434 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 21.Dubois V, Eeckhoute J, Lefebvre P, Staels B. Distinct but complementary contributions of PPAR isotypes to energy homeostasis. J Clin Invest. (2017) 127:1202–14. 10.1172/JCI88894 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 22.Liu X, Liu J, Zhao S, Zhang H, Cai W, Cai M, et al. Interleukin-4 is essential for microglia/macrophage M2 polarization and long-term recovery after cerebral ischemia. Stroke. (2016) 47:498–504. 10.1161/STROKEAHA.115.012079 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 23.Klinkert K, Whelan D, Clover AJP, Leblond A-L, Kumar AHS, Caplice NM. Selective M2 macrophage depletion leads to prolonged inflammation in surgical wounds. Eur Surg Res. (2017) 58:109–20. 10.1159/000451078 [DOI] [PubMed] [Google Scholar]
- 24.Zhang M-Z, Wang X, Wang Y, Niu A, Wang S, Zou C, et al. IL-4/IL-13-mediated polarization of renal macrophages/dendritic cells to an M2a phenotype is essential for recovery from acute kidney injury. Kidney Int. (2017) 91:375–86. 10.1016/j.kint.2016.08.020 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 25.O'Neill LAJ, Kishton RJ, Rathmell J. A guide to immunometabolism for immunologists. Nat Rev Immunol. (2016) 16:553–65. 10.1038/nri.2016.70 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 26.Murray PJ, Wynn TA. Protective and pathogenic functions of macrophage subsets. Nat Rev Immunol. (2011) 11:723–37. 10.1038/nri3073 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 27.Xue J, Schmidt SV, Sander J, Draffehn A, Krebs W, Quester I, et al. Transcriptome-based network analysis reveals a spectrum model of human macrophage activation. Immunity. (2014) 40:274–88. 10.1016/j.immuni.2014.01.006 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 28.Mantovani A, Sica A, Sozzani S, Allavena P, Vecchi A, Locati M. The chemokine system in diverse forms of macrophage activation and polarization. Trends Immunol. (2004) 25:677–86. 10.1016/j.it.2004.09.015 [DOI] [PubMed] [Google Scholar]
- 29.Sudan B, Wacker MA, Wilson ME, Graff JW. A systematic approach to identify markers of distinctly activated human macrophages. Front Immunol. (2015) 6:253. 10.3389/fimmu.2015.00253 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 30.Sica A, Mantovani A. Macrophage plasticity and polarization: in vivo veritas. J Clin Invest. (2012) 122:787–95. 10.1172/JCI59643 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 31.Mantovani A, Biswas SK, Galdiero MR, Sica A, Locati M. Macrophage plasticity and polarization in tissue repair and remodelling. J Pathol. (2012) 229:176–85. 10.1002/path.4133 [DOI] [PubMed] [Google Scholar]
- 32.Yanai H, Negishi H, Taniguchi T. The IRF family of transcription factors: inception, impact and implications in oncogenesis. Oncoimmunology. (2012) 1:1376–86. 10.4161/onci.22475 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 33.Müller E, Christopoulos PF, Halder S, Lunde A, Beraki K, Speth M, et al. Toll-like receptor ligands and Interferon-γ synergize for induction of antitumor M1 macrophages. Front Immunol. (2017) 8:1383. 10.3389/fimmu.2017.01383 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 34.Warburg O, Wind F, Negelein E. The metabolism of tumors in the body. J Gen Physiol. (1927) 8:519–30. 10.1085/jgp.8.6.519 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 35.Rodríguez-Prados J-C, Través PG, Cuenca J, Rico D, Aragonés J, Martín-Sanz P, et al. Substrate fate in activated macrophages: a comparison between innate, classic, and alternative activation. J Immunol. (2010) 185:605–14. 10.4049/jimmunol.0901698 [DOI] [PubMed] [Google Scholar]
- 36.Tannahill GM, Curtis AM, Adamik J, Palsson-McDermott EM, McGettrick AF, Goel G, et al. Succinate is an inflammatory signal that induces IL-1β through HIF-1α. Nature. (2013) 496:238–42. 10.1038/nature11986 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 37.Wang L, Hong Y, Wu J, Leung Y-K, Huang Y. Efficacy of thalidomide therapy in pediatric Crohn's disease with evidence of tuberculosis. World J Gastroenterol. (2017) 23:7727–34. 10.3748/wjg.v23.i43.7727 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 38.Diskin C, Pålsson-McDermott EM. Metabolic modulation in macrophage effector function. Front Immunol. (2018) 9:270. 10.3389/fimmu.2018.00270 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 39.Stein M, Keshav S, Harris N, Gordon S. Interleukin 4 potently enhances murine macrophage mannose receptor activity: a marker of alternative immunologic macrophage activation. J Exp Med. (1992) 176:287–92. 10.1084/jem.176.1.287 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 40.Martinez-Nunez RT, Louafi F, Sanchez-Elsner T. The interleukin 13 (IL-13) pathway in human macrophages is modulated by microRNA-155 via direct targeting of interleukin 13 receptor alpha1 (IL13Ralpha1). J Biol Chem. (2011) 286:1786–94. 10.1074/jbc.M110.169367 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 41.Wei L, Vahedi G, Sun H-W, Watford WT, Takatori H, Ramos HL, et al. Discrete roles of STAT4 and STAT6 transcription factors in tuning epigenetic modifications and transcription during T helper cell differentiation. Immunity. (2010) 32:840–51. 10.1016/j.immuni.2010.06.003 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 42.Zhong Y, Yi C. MicroRNA-720 suppresses M2 macrophage polarization by targeting GATA3. Biosci Rep. (2016) 36:e00363. 10.1042/BSR20160105 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 43.Chuang Y, Hung ME, Cangelose BK, Leonard JN. Regulation of the IL-10-driven macrophage phenotype under incoherent stimuli. Innate Immun. (2016) 22:647–57. 10.1177/1753425916668243 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 44.Staples KJ, Smallie T, Williams LM, Foey A, Burke B, Foxwell BMJ, et al. IL-10 induces IL-10 in primary human monocyte-derived macrophages via the transcription factor Stat3. J Immunol. (2007) 178:4779–85. 10.4049/jimmunol.178.8.4779 [DOI] [PubMed] [Google Scholar]
- 45.Huang SC-C, Everts B, Ivanova Y, O'Sullivan D, Nascimento M, Smith AM, et al. Cell-intrinsic lysosomal lipolysis is essential for alternative activation of macrophages. Nat Immunol. (2014) 15:846–55. 10.1038/ni.2956 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 46.Jha AK, Huang SC-C, Sergushichev A, Lampropoulou V, Ivanova Y, Loginicheva E, et al. Network integration of parallel metabolic and transcriptional data reveals metabolic modules that regulate macrophage polarization. Immunity. (2015) 42:419–30. 10.1016/j.immuni.2015.02.005 [DOI] [PubMed] [Google Scholar]
- 47.Vats D, Mukundan L, Odegaard JI, Zhang L, Smith KL, Morel CR, et al. Oxidative metabolism and PGC-1beta attenuate macrophage-mediated inflammation. Cell Metab. (2006) 4:13–24. 10.1016/j.cmet.2006.05.011 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 48.Covarrubias AJ, Aksoylar HI, Yu J, Snyder NW, Worth AJ, Iyer SS, et al. Akt-mTORC1 signaling regulates Acly to integrate metabolic input to control of macrophage activation. eLife. (2016) 5:e11612. 10.7554/eLife.11612 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 49.Liu P-S, Wang H, Li X, Chao T, Teav T, Christen S, et al. α-ketoglutarate orchestrates macrophage activation through metabolic and epigenetic reprogramming. Nat Immunol. (2017) 18:985–94. 10.1038/ni.3796 [DOI] [PubMed] [Google Scholar]
- 50.Ren W, Xia Y, Chen S, Wu G, Bazer FW, Zhou B, et al. Glutamine metabolism in macrophages: a novel target for obesity/type 2 diabetes. Adv Nutr. (2019) 10:321–30. 10.1093/advances/nmy084 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 51.World Health Organization . Global Tuberculosis Report 2018. Geneva:World Health Organization. (2018) Available online at: https://www.who.int/tb/publications/global_report/en/ [Google Scholar]
- 52.Russell DG. Who puts the tubercle in tuberculosis? Nat Rev Microbiol. (2007) 5:39–47. 10.1038/nrmicro1538 [DOI] [PubMed] [Google Scholar]
- 53.Ramakrishnan L. Revisiting the role of the granuloma in tuberculosis. Nat Rev Immunol. (2012) 12:352–66. 10.1038/nri3211 [DOI] [PubMed] [Google Scholar]
- 54.Srivastava S, Ernst JD, Desvignes L. Beyond macrophages: the diversity of mononuclear cells in tuberculosis. Immunol Rev. (2014) 262:179–92. 10.1111/imr.12217 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 55.Cooper AM. Cell-mediated immune responses in tuberculosis. Annu Rev Immunol. (2009) 27:393–422. 10.1146/annurev.immunol.021908.132703 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 56.Lin PL, Ford CB, Coleman MT, Myers AJ, Gawande R, Ioerger T, et al. Sterilization of granulomas is common in active and latent tuberculosis despite within-host variability in bacterial killing. Nat Med. (2014) 20:75–9. 10.1038/nm.3412 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 57.Pan H, Yan BS, Rojas M, Shebzukhov YV, Zhou H, Kobzik L, et al. Ipr1 gene mediates innate immunity to tuberculosis. Nature. (2005) 434:767–72. 10.1038/nature03419 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 58.Ratcliffe HL. Tuberculosis induced by droplet nuclei infection; pulmonary tuberculosis of predetermined initial intensity in mammals. Am J Hyg. (1952) 55:36–47. 10.1093/oxfordjournals.aje.a119504 [DOI] [PubMed] [Google Scholar]
- 59.Ratcliffe HL, Palladino VS. Tuberculosis induced by droplet nuclei infection; initial homogeneous response of small mammals (rats, mice, guinea pigs, and hamsters) to human and to bovine bacilli, and the rate and pattern of tubercle development. J Exp Med. (1953) 97:61–8. 10.1084/jem.97.1.61 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 60.Dannenberg AM. Immunopathogenesis of pulmonary tuberculosis. Hospital Pract. (1993) 28:51–8. 10.1080/21548331.1993.11442738 [DOI] [PubMed] [Google Scholar]
- 61.Clay H, Davis JM, Beery D, Huttenlocher A, Lyons SE, Ramakrishnan L. Dichotomous role of the macrophage in early Mycobacterium marinum infection of the zebrafish. Cell Host and Microbe. (2007) 2:29–39. 10.1016/j.chom.2007.06.004 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 62.Wolf AJ, Linas B, Trevejo-Nuñez GJ, Kincaid E, Tamura T, Takatsu K, et al. Mycobacterium tuberculosis infects dendritic cells with high frequency and impairs their function in vivo. J Immunol. (2007) 179:2509–19. 10.4049/jimmunol.179.4.2509 [DOI] [PubMed] [Google Scholar]
- 63.Wolf AJ, Desvignes L, Linas B, Banaiee N, Tamura T, Takatsu K, et al. Initiation of the adaptive immune response to Mycobacterium tuberculosis depends on antigen production in the local lymph node, not the lungs. J Exp Med. (2008) 205:105–15. 10.1084/jem.20071367 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 64.Poulsen A. Some clinical features of tuberculosis. 1. Incubation period. Acta Tuberc Scand. (1950) 24:311–46. [PubMed] [Google Scholar]
- 65.Wallgren A. The time-table of tuberculosis. Tubercle. (1948) 29:245–51. 10.1016/s0041-3879(48)80033-4 [DOI] [PubMed] [Google Scholar]
- 66.Flynn JL, Chan J, Lin PL. Macrophages and control of granulomatous inflammation in tuberculosis. Mucosal Immunol. (2011) 4:271–8. 10.1038/mi.2011.14 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 67.Mattila JT, Ojo OO, Kepka-Lenhart D, Marino S, Kim JH, Eum SY, et al. Microenvironments in tuberculous granulomas are delineated by distinct populations of macrophage subsets and expression of nitric oxide synthase and arginase isoforms. J Immunol. (2013) 191:773–84. 10.4049/jimmunol.1300113 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 68.Marino S, Cilfone NA, Mattila JT, Linderman JJ, Flynn JL, Kirschner DE. Macrophage polarization drives granuloma outcome during Mycobacterium tuberculosis infection. Infect Immun. (2015) 83:324–38. 10.1128/IAI.02494-14 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 69.Huang Z, Luo Q, Guo Y, Chen J, Xiong G, Peng Y, et al. Mycobacterium tuberculosis-induced polarization of human macrophage orchestrates the formation and development of tuberculous granulomas in vitro. PLoS ONE. (2015) 10:e0129744. 10.1371/journal.pone.0129744 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 70.Hirsch CS, Ellner JJ, Russell DG, Rich EA. Complement receptor-mediated uptake and tumor necrosis factor-alpha-mediated growth inhibition of Mycobacterium tuberculosis by human alveolar macrophages. J Immunol. (1994) 152:743–53. [PubMed] [Google Scholar]
- 71.Rich EA, Torres M, Sada E, Finegan CK, Hamilton BD, Toossi Z. Mycobacterium tuberculosis (MTB)-stimulated production of nitric oxide by human alveolar macrophages and relationship of nitric oxide production to growth inhibition of MTB. Tubercle Lung Dis. (1997) 78:247–55. 10.1016/S0962-8479(97)90005-8 [DOI] [PubMed] [Google Scholar]
- 72.Aston C, Rom WN, Talbot AT, Reibman J. Early inhibition of mycobacterial growth by human alveolar macrophages is not due to nitric oxide. Am J Respir Critic Care Med. (1998) 157(6 Pt 1):1943–50. 10.1164/ajrccm.157.6.9705028 [DOI] [PubMed] [Google Scholar]
- 73.Rutledge BJ, Rayburn H, Rosenberg R, North RJ, Gladue RP, Corless CL, et al. High level monocyte chemoattractant protein-1 expression in transgenic mice increases their susceptibility to intracellular pathogens. J Immunol. (1995) 155:4838–43. [PubMed] [Google Scholar]
- 74.Antonelli LRV, Gigliotti Rothfuchs A, Gonçalves R, Roffê E, Cheever AW, Bafica A, et al. Intranasal Poly-IC treatment exacerbates tuberculosis in mice through the pulmonary recruitment of a pathogen-permissive monocyte/macrophage population. J Clin Invest. (2010) 120:1674–82. 10.1172/JCI40817 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 75.Cambier CJ, O'Leary SM, O'Sullivan MP, Keane J, Ramakrishnan L. Phenolic glycolipid facilitates mycobacterial escape from microbicidal tissue-resident macrophages. Immunity. (2017) 47:552–65.e4. 10.1016/j.immuni.2017.08.003 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 76.Mitsi E, Kamng'ona R, Rylance J, Solórzano C, Jesus Reiné J, Mwandumba HC, et al. Human alveolar macrophages predominately express combined classical M1 and M2 surface markers in steady state. Respir Res. (2018) 19:66. 10.1186/s12931-018-0777-0 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 77.Hussell T, Bell TJ. Alveolar macrophages: plasticity in a tissue-specific context. Nat Rev Immunol. (2014) 14:81–93. 10.1038/nri3600 [DOI] [PubMed] [Google Scholar]
- 78.Huang L, Nazarova EV, Tan S, Liu Y, Russell DG. Growth of Mycobacterium tuberculosis in vivo segregates with host macrophage metabolism and ontogeny. J Exp Med. (2018) 215:1135–52. 10.1084/jem.20172020 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 79.Lee W, VanderVen BC, Fahey RJ, Russell DG. Intracellular Mycobacterium tuberculosis exploits host-derived fatty acids to limit metabolic stress. J Biol Chem. (2013) 288:6788–800. 10.1074/jbc.M112.445056 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 80.Podinovskaia M, Lee W, Caldwell S, Russell DG. Infection of macrophages with Mycobacterium tuberculosis induces global modifications to phagosomal function. Cell Microbiol. (2013) 15:843–59. 10.1111/cmi.12092 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 81.VanderVen BC, Fahey RJ, Lee W, Liu Y, Abramovitch RB, Memmott C, et al. Novel inhibitors of cholesterol degradation in Mycobacterium tuberculosis reveal how the bacterium's metabolism is constrained by the intracellular environment. PLoS Pathog. (2015) 11:e1004679. 10.1371/journal.ppat.1004679 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 82.Nazarova EV, Montague CR, La T, Wilburn KM, Sukumar N, Lee W, et al. Rv3723/LucA coordinates fatty acid and cholesterol uptake in Mycobacterium tuberculosis. eLife. (2017) 6:e26969. 10.7554/eLife.26969 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 83.McNab F, Mayer-Barber K, Sher A, Wack A, O'Garra A. Type I interferons in infectious disease. Nat Rev Immunol. (2015) 15:87–103. 10.1038/nri3787 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 84.Shi L, Salamon H, Eugenin EA, Pine R, Cooper A, Gennaro ML. Infection with Mycobacterium tuberculosis induces the Warburg effect in mouse lungs. Sci Rep. (2015) 51:8176 10.1038/srep18176 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 85.Gleeson LE, Sheedy FJ, Palsson-McDermott EM, Triglia D, O'Leary SM, O'Sullivan MP, et al. Cutting edge: Mycobacterium tuberculosis induces aerobic glycolysis in human alveolar macrophages that is required for control of intracellular bacillary replication. J Immunol. (2016) 196:2444–9. 10.4049/jimmunol.1501612 [DOI] [PubMed] [Google Scholar]
- 86.Gleeson LE, O'Leary SM, Ryan D, McLaughlin AM, Sheedy FJ, Keane J. Cigarette smoking impairs the bioenergetic immune response to Mycobacterium tuberculosis infection. Am J Respir Cell Mol Biol. (2018) 59:572–9. 10.1165/rcmb.2018-0162OC [DOI] [PubMed] [Google Scholar]
- 87.Leemans JC, Juffermans NP, Florquin S, van Rooijen N, Vervoordeldonk MJ, Verbon A, et al. Depletion of alveolar macrophages exerts protective effects in pulmonary tuberculosis in mice. J Immunol. (2001) 166:4604–11. 10.4049/jimmunol.166.7.4604 [DOI] [PubMed] [Google Scholar]
- 88.Leemans JC, Thepen T, Weijer S, Florquin S, van Rooijen N, van de Winkel JG, et al. Macrophages play a dual role during pulmonary tuberculosis in mice. J Infect Dis. (2005) 191:65–74. 10.1086/426395 [DOI] [PubMed] [Google Scholar]
- 89.Russell DG, Huang L, VanderVen BC. Immunometabolism at the interface between macrophages and pathogens. Nat Rev Immunol. (2019) 19:291–304. 10.1038/s41577-019-0124-9 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 90.Kang DD, Lin Y, Moreno JR, Randall TD, Khader SA. Profiling early lung immune responses in the mouse model of tuberculosis. PLoS ONE. (2011) 6:e16161. 10.1371/journal.pone.0016161 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 91.Roy S, Schmeier S, Kaczkowski B, Arner E, Alam T, Ozturk M, et al. Transcriptional landscape of Mycobacterium tuberculosis infection in macrophages. Sci Rep. (2018) 8:6758. 10.1038/s41598-018-24509-6 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 92.Shi L, Jiang Q, Bushkin Y, Subbian S, Tyagi S. Biphasic dynamics of macrophage immunometabolism during Mycobacterium tuberculosis infection. MBio. (2019) 10:e02550–18. 10.1128/mBio.02550-18 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 93.Williams NC, O'Neill LAJ. A role for the krebs cycle intermediate citrate in metabolic reprogramming in innate immunity and inflammation. Front Immunol. (2018) 9:141. 10.3389/fimmu.2018.00141 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 94.Dolan SK, Welch M. The glyoxylate shunt, 60 years on. Annu Rev Microbiol. (2018) 72:309–30. 10.1146/annurev-micro-090817-062257 [DOI] [PubMed] [Google Scholar]
- 95.McKinney JD, Höner zu Bentrup K, Muñoz-Elías EJ, Miczak A, Chen B, Chan WT, et al. Persistence of Mycobacterium tuberculosis in macrophages and mice requires the glyoxylate shunt enzyme isocitrate lyase. Nature. (2000) 406:735–8. 10.1038/35021074 [DOI] [PubMed] [Google Scholar]
- 96.Muñoz-Elías EJ, McKinney JD. Mycobacterium tuberculosis isocitrate lyases 1 and 2 are jointly required for in vivo growth and virulence. Nat Med. (2005) 11:638–44. 10.1038/nm1252 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 97.Cordes T, Wallace M, Michelucci A, Divakaruni AS, Sapcariu SC, Sousa C, et al. Immunoresponsive gene 1 and itaconate inhibit succinate dehydrogenase to modulate intracellular succinate levels. J Biol Chem. (2016) 291:14274–84. 10.1074/jbc.M115.685792 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 98.Mills E, O'Neill LAJ. Succinate: a metabolic signal in inflammation. Trends Cell Biol. (2014) 24:313–20. 10.1016/j.tcb.2013.11.008 [DOI] [PubMed] [Google Scholar]
- 99.Selak MA, Armour SM, MacKenzie ED, Boulahbel H, Watson DG, Mansfield KD, et al. Succinate links TCA cycle dysfunction to oncogenesis by inhibiting HIF-alpha prolyl hydroxylase. Cancer Cell. (2005) 7:77–85. 10.1016/j.ccr.2004.11.022 [DOI] [PubMed] [Google Scholar]
- 100.Lampropoulou V, Sergushichev A, Bambouskova M, Nair S, Vincent EE, Loginicheva E, et al. Itaconate links inhibition of succinate dehydrogenase with macrophage metabolic remodeling and regulation of inflammation. Cell Metab. (2016) 24:158–66. 10.1016/j.cmet.2016.06.004 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 101.Rohde KH, Veiga DFT, Caldwell S, Balázsi G, Russell DG. Linking the transcriptional profiles and the physiological states of Mycobacterium tuberculosis during an extended intracellular infection. PLoS Pathog. (2012) 8:e1002769. 10.1371/journal.ppat.1002769 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 102.Gill WP, Harik NS, Whiddon MR, Liao RP, Mittler JE, Sherman DR. A replication clock for Mycobacterium tuberculosis. Nat Med. (2009) 15:211–4. 10.1038/nm.1915 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 103.Schnappinger D, Ehrt S, Voskuil MI, Liu Y, Mangan JA, Monahan IM, et al. Transcriptional adaptation of Mycobacterium tuberculosis within macrophages: insights into the phagosomal environment. J Exp Med. (2003) 198:693–704. 10.1084/jem.20030846 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 104.Russell DG, Cardona P-J, Kim M-J, Allain S, Altare F. Foamy macrophages and the progression of the human tuberculosis granuloma. Nat Immunol. (2009) 10:943–8. 10.1038/ni.1781 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 105.Brown RE, Hunter RL, Hwang S-A. Morphoproteomic-guided host-directed therapy for tuberculosis. Front Immunol. (2017) 8:78. 10.3389/fimmu.2017.00078 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 106.Caron A, Richard D, Laplante M. The roles of mTOR complexes in lipid metabolism. Annu Rev Nutr. (2015) 35:321–48. 10.1146/annurev-nutr-071714-034355 [DOI] [PubMed] [Google Scholar]
- 107.Zullo AJ, Lee S. Mycobacterial induction of autophagy varies by species and occurs independently of mammalian target of rapamycin inhibition. J Biol Chem. (2012) 287:12668–78. 10.1074/jbc.M111.320135 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 108.Yang C-S, Song C-H, Lee J-S, Jung S-B, Oh J-H, Park J, et al. Intracellular network of phosphatidylinositol 3-kinase, mammalian target of the rapamycin/70 kDa ribosomal S6 kinase 1, and mitogen-activated protein kinases pathways for regulating mycobacteria-induced IL-23 expression in human macrophages. Cell Microbiol. (2006) 8:1158–71. 10.1111/j.1462-5822.2006.00699.x [DOI] [PubMed] [Google Scholar]
- 109.Almeida PE, Carneiro AB, Silva AR, Bozza PT. Pparγ expression and function in mycobacterial infection: roles in lipid metabolism, immunity, and bacterial killing. PPAR Res. (2012).2012:383829. 10.1155/2012/383829 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 110.Almeida PE, Silva AR, Maya-Monteiro CM, Töröcsik D, D'Avila H, Dezsö B, et al. Mycobacterium bovis bacillus Calmette-Guérin infection induces TLR2-dependent peroxisome proliferator-activated receptor gamma expression and activation: functions in inflammation, lipid metabolism, and pathogenesis. J Immunol. (2009) 183:1337–45. 10.4049/jimmunol.0900365 [DOI] [PubMed] [Google Scholar]
- 111.Rajaram MVS, Brooks MN, Morris JD, Torrelles JB, Azad AK, Schlesinger LS. Mycobacterium tuberculosis activates human macrophage peroxisome proliferator-activated receptor gamma linking mannose receptor recognition to regulation of immune responses. J. Immunology. (2010) 185:929–42. 10.4049/jimmunol.1000866 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 112.Salamon H, Bruiners N, Lakehal K, Shi L, Ravi J, Yamaguchi KD, et al. Cutting edge: vitamin D regulates lipid metabolism in Mycobacterium tuberculosis infection. J Immunol. (2014) 193:30–4. 10.4049/jimmunol.1400736 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 113.Guirado E, Rajaram MV, Chawla A, Daigle J, La Perle KM, Arnett E, et al. Deletion of PPARγ in lung macrophages provides an immunoprotective response against M. tuberculosis infection in mice. Tuberculosis. (2018) 111:170–7. 10.1016/j.tube.2018.06.012 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 114.Kim JE, Chen J. Regulation of peroxisome proliferator-activated receptor-gamma activity by mammalian target of rapamycin and amino acids in adipogenesis. Diabetes. (2004) 53:2748–56. 10.2337/diabetes.53.11.2748 [DOI] [PubMed] [Google Scholar]
- 115.Le Bacquer O, Petroulakis E, Paglialunga S, Poulin F, Richard D, Cianflone K, et al. Elevated sensitivity to diet-induced obesity and insulin resistance in mice lacking 4E-BP1 and 4E-BP2. J Clin Invest. (2007) 117:387–96. 10.1172/JCI29528 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 116.Han L, Shen W-J, Bittner S, Kraemer FB, Azhar S. PPARs: regulators of metabolism and as therapeutic targets in cardiovascular disease. Part I PPAR-α Future Cardiol. (2017) 13:259–78. 10.2217/fca-2016-0059 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 117.Kim YS, Lee H-M, Kim JK, Yang C-S, Kim TS, Jung M, et al. PPAR-α activation mediates innate host defense through induction of TFEB and lipid catabolism. J Immunol. (2017) 198:3283–95. 10.4049/jimmunol.1601920 [DOI] [PubMed] [Google Scholar]
- 118.Jo E-K, Silwal P, Yuk J-M. AMPK-targeted effector networks in mycobacterial infection. Front Microbiol. (2019) 10:520. 10.3389/fmicb.2019.00520 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 119.Liang M, Habib Z, Sakamoto K, Chen X, Cao G. Mycobacteria and autophagy: many questions and few answers. Curr Issues Mol Biol. (2017) 21:63–72. 10.21775/cimb.021.063 [DOI] [PubMed] [Google Scholar]
- 120.Dong H, Jing W, Runpeng Z, Xuewei X, Min M, Ru C, et al. ESAT6 inhibits autophagy flux and promotes BCG proliferation through MTOR. Biochem Biophys Res Commun. (2016) 477:195–201. 10.1016/j.bbrc.2016.06.042 [DOI] [PubMed] [Google Scholar]
- 121.Chang YY, Juhász G, Goraksha-Hicks P, Arsham AM, Mallin DR, Muller LK, et al. Nutrient-dependent regulation of autophagy through the target of rapamycin pathway. Biochem Soc Trans. (2009) 37(Pt 1):232–6. 10.1042/BST0370232 [DOI] [PubMed] [Google Scholar]
- 122.Jung CH, Ro S-H, Cao J, Otto NM, Kim D-H. mTOR regulation of autophagy. FEBS Lett. (2010) 584:1287–95. 10.1016/j.febslet.2010.01.017 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 123.Sengupta S, Peterson TR, Laplante M, Oh S, Sabatini DM. mTORC1 controls fasting-induced ketogenesis and its modulation by ageing. Nature. (2010) 468:1100–4. 10.1038/nature09584 [DOI] [PubMed] [Google Scholar]
- 124.World Health Organization Schistosomiasis: Progress Report 2001-2011, Strategic Plan 2012-2020. Geneva: World Health Organization; (2013). Available online at: http://www.who.int/iris/handle/10665/78074 [Google Scholar]
- 125.King CH, Dickman K, Tisch DJ. Reassessment of the cost of chronic helmintic infection: a meta-analysis of disability-related outcomes in endemic schistosomiasis. Lancet. (2005) 365:1561–9. 10.1016/S0140-6736(05)66457-4 [DOI] [PubMed] [Google Scholar]
- 126.Grzych JM, Pearce E, Cheever A, Caulada ZA, Caspar P, Heiny S, et al. Egg deposition is the major stimulus for the production of Th2 cytokines in murine schistosomiasis mansoni. J Immunol. (1991) 146:1322–7. [PubMed] [Google Scholar]
- 127.Lambertucci JR, Serufo JC, Gerspacher-Lara R, Rayes AA, Teixeira R, Nobre V, et al. Schistosoma mansoni: assessment of morbidity before and after control. Acta Trop. (2000) 77:101–9. 10.1016/S0001-706X(00)00124-8 [DOI] [PubMed] [Google Scholar]
- 128.Hams E, Aviello G, Fallon PG. The schistosoma granuloma: friend or foe? Front Immunol. (2013) 4:89 10.3389/fimmu.2013.00089 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 129.Elbaz T, Esmat G. Hepatic and intestinal schistosomiasis: review. J Adv Res. (2013) 4:445–52. 10.1016/j.jare.2012.12.001 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 130.Wilson MS, Mentink-Kane MM, Pesce JT, Ramalingam TR, Thompson R, Wynn TA. Immunopathology of schistosomiasis. Immunol Cell Biol. (2007) 85:148–54. 10.1038/sj.icb.7100014 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 131.Girgis NM, Gundra UM, Ward LN, Cabrera M, Frevert U, Loke P. Ly6C(high) monocytes become alternatively activated macrophages in schistosome granulomas with help from CD4+ cells. PLoS Pathog. (2014) 10:e1004080. 10.1371/journal.ppat.1004080 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 132.Weinstock JV, Boros DL. Organ-dependent differences in composition and function observed in hepatic and intestinal granulomas isolated from mice with Schistosomiasis mansoni. J Immunol. (1983) 130:418–22. [PubMed] [Google Scholar]
- 133.Amaral KB, Silva TP, Dias FF, Malta KK, Rosa FM, Costa-Neto SF, et al. Histological assessment of granulomas in natural and experimental Schistosoma mansoni infections using whole slide imaging. PLoS ONE. (2017) 12:e0184696. 10.1371/journal.pone.0184696 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 134.Everts B, Perona-Wright G, Smits HH, Hokke CH, van der Ham AJ, Fitzsimmons CM, et al. Omega-1, a glycoprotein secreted by Schistosoma mansoni eggs, drives Th2 responses. J Exp Med. (2009) 206:1673–80. 10.1084/jem.20082460 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 135.Everts B, Hussaarts L, Driessen NN, Meevissen MHJ, Schramm G, van der Ham AJ, et al. Schistosome-derived omega-1 drives Th2 polarization by suppressing protein synthesis following internalization by the mannose receptor. J Exp Med. (2012) 209:1753–67. 10.1084/jem.20111381 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 136.Ritter DM, McKerrow JH. Intercellular adhesion molecule 1 is the major adhesion molecule expressed during schistosome granuloma formation. Infect Immun. (1996) 64:4706–13. [DOI] [PMC free article] [PubMed] [Google Scholar]
- 137.Rahman K, Vengrenyuk Y, Ramsey SA, Vila NR, Girgis NM, Liu J, et al. Inflammatory Ly6Chi monocytes and their conversion to M2 macrophages drive atherosclerosis regression. J Clin Invest. (2017) 127:2904–15. 10.1172/JCI75005 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 138.Nascimento M, Huang SC, Smith A, Everts B, Lam W, Bassity E, et al. Ly6Chi monocyte recruitment is responsible for Th2 associated host-protective macrophage accumulation in liver inflammation due to schistosomiasis. PLoS Pathog. (2014) 10:e1004282. 10.1371/journal.ppat.1004282 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 139.Loke P, Nair MG, Parkinson J, Guiliano D, Blaxter M, Allen JE. IL-4 dependent alternatively-activated macrophages have a distinctive in vivo gene expression phenotype. BMC Immunol. (2002) 3:7. 10.1186/1471-2172-3-7 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 140.Gong W, Huang F, Sun L, Yu A, Zhang X, Xu Y, et al. Toll-like receptor-2 regulates macrophage polarization induced by excretory-secretory antigens from Schistosoma japonicum eggs and promotes liver pathology in murine schistosomiasis. PLoS Negl Trop Dis. (2018) 12:e0007000. 10.1371/journal.pntd.0007000 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 141.Tundup S, Srivastava L, Nagy T, Harn D. CD14 influences host immune responses and alternative activation of macrophages during Schistosoma mansoni infection. Infect Immun. (2014) 82:3240–51. 10.1128/IAI.01780-14 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 142.An D, Hao F, Zhang F, Kong W, Chun J, Xu X, et al. CD14 is a key mediator of both lysophosphatidic acid and lipopolysaccharide induction of foam cell formation. J Biol Chem. (2017) 292:14391–400. 10.1074/jbc.M117.781807 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 143.Cortes-Selva D, Elvington AF, Ready A, Rajwa B, Pearce EJ, Randolph GJ, et al. Schistosoma mansoni infection-induced transcriptional changes in hepatic macrophage metabolism correlate with an athero-protective phenotype. Front Immunol. (2018) 9:2580. 10.3389/fimmu.2018.02580 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 144.Odegaard JI, Ricardo-Gonzalez RR, Goforth MH, Morel CR, Subramanian V, Mukundan L, et al. Macrophage-specific PPARgamma controls alternative activation and improves insulin resistance. Nature. (2007) 447:1116–20. 10.1038/nature05894 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 145.Ahmadian M, Suh JM, Hah N, Liddle C, Atkins AR, Downes M, et al. PPARγ signaling and metabolism: the good, the bad and the future. Nat Med. (2013) 19:557–66. 10.1038/nm.3159 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 146.Marion-Letellier R, Savoye G, Ghosh S. Fatty acids, eicosanoids and PPAR gamma. Eur J Pharmacol. (2016) 785:44–9. 10.1016/j.ejphar.2015.11.004 [DOI] [PubMed] [Google Scholar]
- 147.Nobs SP, Kopf M. PPAR-γ in innate and adaptive lung immunity. J Leuk Biol. (2018) 104:737–41. 10.1002/JLB.3MR0118-034R [DOI] [PubMed] [Google Scholar]
- 148.Hou Y, Moreau F, Chadee K. PPARγ is an E3 ligase that induces the degradation of NFκB/p65. Nat Commun. (2012) 31:300 10.1038/ncomms2270 [DOI] [PubMed] [Google Scholar]
- 149.Assunção LS, Magalhães KG, Carneiro AB, Molinaro R, Almeida PE, Atella GC, et al. Schistosomal-derived lysophosphatidylcholine triggers M2 polarization of macrophages through PPARγ dependent mechanisms. Biochim Biophys Mol cell biology of lipids. (2017) 1862:246–54. 10.1016/j.bbalip.2016.11.006 [DOI] [PubMed] [Google Scholar]
- 150.Anthony B, Mathieson W, de Castro-Borges W, Allen J. Schistosoma mansoni: egg-induced downregulation of hepatic stellate cell activation and fibrogenesis. Exp Parasitol. (2010) 124:409–20. 10.1016/j.exppara.2009.12.009 [DOI] [PubMed] [Google Scholar]
- 151.Gobert GN, Burke ML, McManus DP, Ellis MK, Chuah C, Ramm GA, et al. Transcriptional profiling of chronic clinical hepatic schistosomiasis japonica indicates reduced metabolism and immune responses. Parasitology. (2015) 142:1453–68. 10.1017/S0031182015000682 [DOI] [PubMed] [Google Scholar]
- 152.Wang L, Xie H, Xu L, Liao Q, Wan S, Yu Z, et al. rSj16 Protects against DSS-Induced Colitis by Inhibiting the PPAR-α signaling pathway. Theranostics. (2017) 7:3446–60. 10.7150/thno.20359 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 153.Huizar I, Malur A, Patel J, McPeek M, Dobbs L, Wingard C, et al. The role of PPARγ in carbon nanotube-elicited granulomatous lung inflammation. Respir Res. (2013) 14:7. 10.1186/1465-9921-14-7 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 154.Doenhoff MJ, Stanley RG, Griffiths K, Jackson CL. An anti-atherogenic effect of Schistosoma mansoni infections in mice associated with a parasite-induced lowering of blood total cholesterol. Parasitology. (2002) 125(Pt 5):415–21. 10.1017/S0031182002002275 [DOI] [PubMed] [Google Scholar]
- 155.da Silva FL, Del-Rei RP, Fraga DBM, Leony LM, de Souza AM, Santos FLN. Alterations in the lipid profiles and circulating liver enzymes in individuals infected by Schistosoma mansoni. Rev Soc Bras Med Trop. (2018) 51:795–801. 10.1590/0037-8682-0113-2018 [DOI] [PubMed] [Google Scholar]
- 156.Stanley RG, Jackson CL, Griffiths K, Doenhoff MJ. Effects of Schistosoma mansoni worms and eggs on circulating cholesterol and liver lipids in mice. Atherosclerosis. (2009) 207:131–8. 10.1016/j.atherosclerosis.2009.04.037 [DOI] [PubMed] [Google Scholar]
- 157.Babaev VR, Yancey PG, Ryzhov SV, Kon V, Breyer MD, Magnuson MA, et al. Conditional knockout of macrophage PPARgamma increases atherosclerosis in C57BL/6 and low-density lipoprotein receptor-deficient mice. Arterioscler Thromb Vasc Biol. (2005) 25:1647–53. 10.1161/01.ATV.0000173413.31789.1a [DOI] [PubMed] [Google Scholar]
- 158.Cuaranta-Monroy I, Kiss M, Simandi Z, Nagy L. Genomewide effects of peroxisome proliferator-activated receptor gamma in macrophages and dendritic cells–revealing complexity through systems biology. Eur J Clin Invest. (2015) 45:964–75. 10.1111/eci.12491 [DOI] [PubMed] [Google Scholar]
- 159.Akiyama TE, Sakai S, Lambert G, Nicol CJ, Matsusue K, Pimprale S, et al. Conditional disruption of the peroxisome proliferator-activated receptor gamma gene in mice results in lowered expression of ABCA1, ABCG1, and apoE in macrophages and reduced cholesterol efflux. Mol Cell Biol. (2002) 22:2607–19. 10.1128/MCB.22.8.2607-2619.2002 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 160.Chinetti G, Lestavel S, Bocher V, Remaley AT, Neve B, Torra IP, et al. PPAR-alpha and PPAR-gamma activators induce cholesterol removal from human macrophage foam cells through stimulation of the ABCA1 pathway. Nat Med. (2001) 7:53–8. 10.1038/83348 [DOI] [PubMed] [Google Scholar]
- 161.Dai L, Chu SP, Wang ZH, Ni HB, Ding X, Tao Y, et al. APOC3 promotes TNF-α-induced expression of JAM-1 in endothelial cell via PI3K-IKK2-p65 pathway. Cardiovasc Pathol. (2019) 41:11–17. 10.1016/j.carpath.2019.02.005 [DOI] [PubMed] [Google Scholar]
- 162.Westerterp M, Berbée JFP, Pires NMM, van Mierlo GJD, Kleemann R, Romijn JA, et al. Apolipoprotein C-I is crucially involved in lipopolysaccharide-induced atherosclerosis development in apolipoprotein E-knockout mice. Circulation. (2007) 116:2173–81. 10.1161/CIRCULATIONAHA.107.693382 [DOI] [PubMed] [Google Scholar]
- 163.Domschke G, Linden F, Pawig L, Hafner A, Akhavanpoor M, Reymann J, et al. Systematic RNA-interference in primary human monocyte-derived macrophages: a high-throughput platform to study foam cell formation. Sci Rep. (2018) 8:10516. 10.1038/s41598-018-28790-3 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 164.Chiba Y, Ogita T, Ando K, Fujita T. PPARgamma ligands inhibit TNF-alpha-induced LOX-1 expression in cultured endothelial cells. Biochem Biophys Res Commun. (2001) 286:541–6. 10.1006/bbrc.2001.5361 [DOI] [PubMed] [Google Scholar]
- 165.Shimada M, Kirinoki M, Shimizu K, Kato-Hayashi N, Chigusa Y, Kitikoon V, et al. Characteristics of granuloma formation and liver fibrosis in murine schistosomiasis mekongi: a morphological comparison between Schistosoma mekongi and S. japonicum infection. Parasitology. (2010) 137:1781–9. 10.1017/S0031182010000806 [DOI] [PubMed] [Google Scholar]
- 166.Ricote M, Li AC, Willson TM, Kelly CJ, Glass CK. The peroxisome proliferator-activated receptor-gamma is a negative regulator of macrophage activation. Nature. (2000) 391:79–82. 10.1038/34178 [DOI] [PubMed] [Google Scholar]
- 167.Tontonoz P, Nagy L, Alvarez JG, Thomazy VA, Evans RM. Pparγ promotes monocyte/macrophage differentiation and uptake of oxidized LDL. Cell. (1998) 93:241–52. 10.1016/S0092-8674(00)81575-5 [DOI] [PubMed] [Google Scholar]
- 168.Nagy L, Tontonoz P, Alvarez JG, Chen H, Evans RM. Oxidized LDL regulates macrophage gene expression through ligand activation of PPARγ. Cell. (1998) 93:229–40. 10.1016/S0092-8674(00)81574-3 [DOI] [PubMed] [Google Scholar]
- 169.Giera M, Kaisar MMM, Derks RJE, Steenvoorden E, Kruize YCM, Hokke CH, et al. The Schistosoma mansoni lipidome: leads for immunomodulation. Anal Chim Acta. (2018) 1037:107–118. 10.1016/j.aca.2017.11.058 [DOI] [PubMed] [Google Scholar]
- 170.Pearce EJ, Huang SC-C. The metabolic control of schistosome egg production. Cell Microbiol. (2015) 17:796–801. 10.1111/cmi.12444 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 171.Chistiakov DA, Bobryshev YV, Orekhov AN. Macrophage-mediated cholesterol handling in atherosclerosis. J Cell Mol Med. (2016) 20:17–28. 10.1111/jcmm.12689 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 172.Rigamonti E, Chinetti-Gbaguidi G, Staels B. Regulation of macrophage functions by PPAR-alpha, PPAR-gamma, and LXRs in mice and men. Arterioscler Thromb Vasc Biol. (2008) 28:1050–9. 10.1161/ATVBAHA.107.158998 [DOI] [PubMed] [Google Scholar]
- 173.Hirakata M, Tozawa R, Imura Y, Sugiyama Y. Comparison of the effects of pioglitazone and rosiglitazone on macrophage foam cell formation. Biochem Biophys Res Commun. (2004) 323:782–8. 10.1016/j.bbrc.2004.08.151 [DOI] [PubMed] [Google Scholar]
- 174.Li C, Tu Y, Liu T-R, Guo Z-G, Xie D, Zhong J-K, et al. Rosiglitazone attenuates atherosclerosis and increases high-density lipoprotein function in atherosclerotic rabbits. Int J Mol Med. (2015) 35:715–23. 10.3892/ijmm.2015.2072 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 175.Chen H, He Y-W, Liu W-Q, Zhang J-H. Rosiglitazone prevents murine hepatic fibrosis induced by Schistosoma japonicum. World Journal of Gastroenterology. (2008) 14:2905–11. 10.3748/wjg.14.2905 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 176.Roman J, Jeon YJ, Gal A, Perez RL. Distribution of extracellular matrices, matrix receptors, and transforming growth factor-beta 1 in human and experimental lung granulomatous inflammation. Am J Med Sci. (1995) 309:124–33. 10.1097/00000441-199503000-00002 [DOI] [PubMed] [Google Scholar]
- 177.Zhu Y, Ni Y, Liu R, Hou M, Yang B, Song J, et al. PPAR-γ agonist alleviates liver and spleen pathology via inducing treg cells during Schistosoma japonicum infection. J Immunol Res. (2018) 2018:6398078. 10.1155/2018/6398078 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 178.Attia YM, Elalkamy EF, Hammam OA, Mahmoud SS, El-Khatib AS. Telmisartan, an AT1 receptor blocker and a PPAR gamma activator, alleviates liver fibrosis induced experimentally by Schistosoma mansoni infection. Parasites Vect. (2013) 6:199. 10.1186/1756-3305-6-199 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 179.Brunet LR, Finkelman FD, Cheever AW, Kopf MA, Pearce EJ. IL-4 protects against TNF-alpha-mediated cachexia and death during acute schistosomiasis. J Immunol. (1997) 159:777–85. [PubMed] [Google Scholar]
- 180.Herbert DR, Hölscher C, Mohrs M, Arendse B, Schwegmann A, Radwanska M, et al. Alternative macrophage activation is essential for survival during schistosomiasis and downmodulates T helper 1 responses and immunopathology. Immunity. (2004) 20:623–35. 10.1016/S1074-7613(04)00107-4 [DOI] [PubMed] [Google Scholar]
- 181.Braga TT, Agudelo JSH, Camara NOS. Macrophages during the fibrotic process: M2 as friend and foe. Front Immunol. (2015) 6:602. 10.3389/fimmu.2015.00602 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 182.Nikolic-Paterson DJ, Wang S, Lan HY. Macrophages promote renal fibrosis through direct and indirect mechanisms. Kidney Int Suppl. (2014) 4:34–8. 10.1038/kisup.2014.7 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 183.Toblli JE, Cao G, Giani JF, Angerosa M, Dominici FP, Gonzalez-Cadavid NF. Antifibrotic effects of pioglitazone at low doses on the diabetic rat kidney are associated with the improvement of markers of cell turnover, tubular and endothelial integrity, and angiogenesis. Kidney Blood Pressure Res. (2011) 34:20–33. 10.1159/000320380 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 184.Da Silva Morais A, Abarca-Quinones J, Horsmans Y, Stärkel P, Leclercq I. Peroxisome proliferated-activated receptor γ ligand, Pioglitazone, does not prevent hepatic fibrosis in mice. Int J Mol Med. (2007) 19:105–12. 10.3892/ijmm.19.1.105 [DOI] [PubMed] [Google Scholar]
- 185.McVicker BL, Bennett RG. Novel anti-fibrotic therapies. Front Pharmacol. (2017) 8:318. 10.3389/fphar.2017.00318 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 186.Saika S, Ikeda K, Yamanaka O, Okada Y, Miyamoto T, Kitano A, Ohnishi Y, et al. Effect of overexpression of PPAR gamma on smad signal in fibroblasts and macrophages and on the healing process of corneal alkali burn in mice. Investig Ophthalmol Visual Sci. (2007) 293:C75–86. 10.1152/ajpcell.00332.2006 [DOI] [PubMed] [Google Scholar]
- 187.Milam JE, Keshamouni VG, Phan SH, Hu B, Gangireddy SR, Hogaboam CM, et al. PPAR-gamma agonists inhibit profibrotic phenotypes in human lung fibroblasts and bleomycin-induced pulmonary fibrosis. Am J Physiol Lung Cell Mol Physiol. (2008) 294:L891–901. 10.1152/ajplung.00333.2007 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 188.Iannuzzi MC, Rybicki BA, Teirstein AS. Sarcoidosis. N Engl J Med. (2007) 357:2153–65. 10.1056/NEJMra071714 [DOI] [PubMed] [Google Scholar]
- 189.Kouranos V, Jacob J, Wells AU. Severe sarcoidosis. Clin Chest Med. (2015) 36:715–26. 10.1016/j.ccm.2015.08.012 [DOI] [PubMed] [Google Scholar]
- 190.Iannuzzi MC, Fontana JR. Sarcoidosis: clinical presentation, immunopathogenesis, and therapeutics. J Am Med Assoc. (2011) 305:391–9. 10.1001/jama.2011.10 [DOI] [PubMed] [Google Scholar]
- 191.Sverrild A, Backer V, Kyvik KO, Kaprio J, Milman N, Svendsen CB, et al. Heredity in sarcoidosis: a registry-based twin study. Thorax. (2008) 63:894–6. 10.1136/thx.2007.094060 [DOI] [PubMed] [Google Scholar]
- 192.Rybicki BA, Iannuzzi MC, Frederick MM, Thompson BW, Rossman MD, Bresnitz EA, et al. Familial aggregation of sarcoidosis. A case-control etiologic study of sarcoidosis (ACCESS). Am J Respir Critic Care Med. (2001) 164:2085–91. 10.1164/ajrccm.164.11.2106001 [DOI] [PubMed] [Google Scholar]
- 193.Adams DO. Experimental pine pollen granulomatous pneumonia in the rat. Am J Pathol. (1966) 49:153–65. [PMC free article] [PubMed] [Google Scholar]
- 194.Chen ES, Moller DR. Etiologies of sarcoidosis. Clin Rev Allergy Immunol. (2015) 49:6–18. 10.1007/s12016-015-8481-z [DOI] [PubMed] [Google Scholar]
- 195.Valeyre D, Prasse A, Nunes H, Uzunhan Y, Brillet P-Y, Müller-Quernheim J. Sarcoidosis. Lancet. (2014) 383:1155–67. 10.1016/S0140-6736(13)60680-7 [DOI] [PubMed] [Google Scholar]
- 196.Facco M, Cabrelle A, Teramo A, Olivieri V, Gnoato M, Teolato S, et al. Sarcoidosis is a Th1/Th17 multisystem disorder. Thorax. (2011) 66:144–50. 10.1136/thx.2010.140319 [DOI] [PubMed] [Google Scholar]
- 197.Sasaki M, Namioka Y, Ito T, Izumiyama N, Fukui S, Watanabe A, et al. Role of ICAM-1 in the aggregation and adhesion of human alveolar macrophages in response to TNF-alpha and INF-gamma. Media Inflamm. (2001) 10:309–13. 10.1080/09629350120102325 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 198.Van Maarsseveen TCMT, Vos W, van Diest PJ. Giant cell formation in sarcoidosis: cell fusion or proliferation with non-division? Clin Exp Immunol. (2009) 155:476–86. 10.1111/j.1365-2249.2008.03841.x [DOI] [PMC free article] [PubMed] [Google Scholar]
- 199.Prokop S, Heppner FL, Goebel HH, Stenzel W. M2 polarized macrophages and giant cells contribute to myofibrosis in neuromuscular sarcoidosis. Am J Pathol. (2011) 178:1279–86. 10.1016/j.ajpath.2010.11.065 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 200.Shamaei M, Mortaz E, Pourabdollah M, Garssen J, Tabarsi P, Velayati A, et al. Evidence for M2 macrophages in granulomas from pulmonary sarcoidosis: a new aspect of macrophage heterogeneity. Hum Immunol. (2018) 79:63–9. 10.1016/j.humimm.2017.10.009 [DOI] [PubMed] [Google Scholar]
- 201.Crouser ED, White P, Caceres EG, Julian MW, Papp AC, Locke LW, et al. A novel in vitro human granuloma model of sarcoidosis and latent tuberculosis infection. Am J Respir Cell Mol Biol. (2017) 57:487–98. 10.1165/rcmb.2016-0321OC [DOI] [PMC free article] [PubMed] [Google Scholar]
- 202.Locke LW, Crouser ED, White P, Julian MW, Guirado Caceres E, Papp AC, et al. IL-13-regulated macrophage polarization during granuloma formation in an in vitro human sarcoidosis model. Am J Respir Cell Mol Biol. (2019) 60:84–95. 10.1165/rcmb.2018-0053OC [DOI] [PMC free article] [PubMed] [Google Scholar]
- 203.Tristão FSM, Rocha FA, Carlos D, Ketelut-Carneiro N, Souza COS, Milanezi CM, et al. Th17-inducing cytokines IL-6 and IL-23 are crucial for granuloma formation during experimental paracoccidioidomycosis. Front Immunol. (2017) 8:949. 10.3389/fimmu.2017.00949 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 204.Nishikawa K, Seo N, Torii M, Ma N, Muraoka D, Tawara I, et al. Interleukin-17 induces an atypical M2-like macrophage subpopulation that regulates intestinal inflammation. PLoS ONE. (2014) 9:e108494. 10.1371/journal.pone.0108494 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 205.Gupta D, Agarwal R, Aggarwal AN, Verma I. Immune responses to mycobacterial antigens in sarcoidosis: a systematic review. Indian J Chest Dis Allied Sci. (2011) 53:41–9. [PubMed] [Google Scholar]
- 206.Culver DA, Barna BP, Raychaudhuri B, Bonfield TL, Abraham S, Malur A, et al. Peroxisome proliferator-activated receptor gamma activity is deficient in alveolar macrophages in pulmonary sarcoidosis. Am J Respir Cell Mol Biol. (2004) 30:1–5. 10.1165/rcmb.2003-0304RC [DOI] [PubMed] [Google Scholar]
- 207.Barna BP, Culver DA, Abraham S, Malur A, Bonfield TL, John N, et al. Depressed peroxisome proliferator-activated receptor gamma (PPargamma) is indicative of severe pulmonary sarcoidosis: possible involvement of interferon gamma (IFN-gamma). Sarcoidosis Vasc Diffuse Lung Dis. (2006) 23:93–100. [PubMed] [Google Scholar]
- 208.Maver A, Medica I, Salobir B, Tercelj-Zorman M, Sabovic M, Petrovic D, et al. Peroxisome proliferator-activated receptor gamma/Pro12Ala polymorphism and peroxisome proliferator-activated receptor gamma coactivator-1 alpha/Gly482Ser polymorphism in patients with sarcoidosis. Sarcoidosis Vasc Diffuse Lung Dis. (2008) 25:29–35. [PubMed] [Google Scholar]
- 209.Malur A, Mccoy AJ, Arce S, Barna BP, Kavuru MS, Malur AG, et al. Deletion of PPAR gamma in alveolar macrophages is associated with a Th-1 pulmonary inflammatory response. J Immunol. (2009) 182:5816–22. 10.4049/jimmunol.0803504 [DOI] [PubMed] [Google Scholar]
- 210.Barna BP, McPeek M, Malur A, Fessler MB, Wingard CJ, Dobbs L, et al. Elevated microRNA-33 in sarcoidosis and a carbon nanotube model of chronic granulomatous disease. Am J Respir Cell Mol Biol. (2016) 54:865–71. 10.1165/rcmb.2015-0332OC [DOI] [PMC free article] [PubMed] [Google Scholar]
- 211.Huizar I, Malur A, Midgette YA, Kukoly C, Chen P, Ke PC, et al. Novel murine model of chronic granulomatous lung inflammation elicited by carbon nanotubes. Am J Respir Cell Mol Biol. (2011) 45:858–66. 10.1165/rcmb.2010-0401OC [DOI] [PMC free article] [PubMed] [Google Scholar]
- 212.McPeek M, Malur A, Tokarz DA, Murray G, Barna BP, Thomassen MJ. PPAR-gamma pathways attenuate pulmonary granuloma formation in a carbon nanotube induced murine model of sarcoidosis. Biochem Biophys Res Commun. (2018) 503:684–90. 10.1016/j.bbrc.2018.06.061 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 213.Wynn TA. Cellular and molecular mechanisms of fibrosis. J Pathol. (2008) 214:199–210. 10.1002/path.2277 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 214.Wynn TA. Integrating mechanisms of pulmonary fibrosis. J Exp Med. (2011) 208:1339–50. 10.1084/jem.20110551 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 215.Drent M, van den Berg R, Haenen GR, van den Berg H, Wouters EF, Bast A. NF-kappaB activation in sarcoidosis. Sarcoidosis Vasc Diffuse Lung Dis. (2001) 18:50–56. [PubMed] [Google Scholar]
- 216.Cilfone NA, Perry CR, Kirschner DE, Linderman JJ. Multi-scale modeling predicts a balance of tumor necrosis factor-α and interleukin-10 controls the granuloma environment during Mycobacterium tuberculosis infection. PLoS ONE. (2013) 8:e68680. 10.1371/journal.pone.0068680 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 217.Baker AD, Malur A, Barna BP, Kavuru MS, Malur AG, Thomassen MJ. PPARgamma regulates the expression of cholesterol metabolism genes in alveolar macrophages. Biochem Biophys Res Commun. (2010) 393:682–7. 10.1016/j.bbrc.2010.02.056 [DOI] [PubMed] [Google Scholar]
- 218.Pennings M, Meurs I, Ye D, Out R, Hoekstra M, Van Berkel TJC, et al. Regulation of cholesterol homeostasis in macrophages and consequences for atherosclerotic lesion development. FEBS Lett. (2006) 580:5588–96. 10.1016/j.febslet.2006.08.022 [DOI] [PubMed] [Google Scholar]
- 219.Bargagli E, Rosi E, Pistolesi M, Lavorini F, Voltolini L, Rottoli P. Increased risk of atherosclerosis in patients with sarcoidosis. Pathobiology. (2017) 84:258–63. 10.1159/000477736 [DOI] [PubMed] [Google Scholar]
- 220.Uhlar CM, Whitehead AS. Serum amyloid A, the major vertebrate acute-phase reactant. Eur J Biochem. (1999) 265:501–23. 10.1046/j.1432-1327.1999.00657.x [DOI] [PubMed] [Google Scholar]
- 221.Sack GH. Serum amyloid A - a review. Mol Med. (2018) 24:46. 10.1186/s10020-018-0047-0 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 222.Bargagli E, Magi B, Olivieri C, Bianchi N, Landi C, Rottoli P. Analysis of serum amyloid A in sarcoidosis patients. Respir Med. (2011) 105:775–80. 10.1016/j.rmed.2010.12.010 [DOI] [PubMed] [Google Scholar]
- 223.Shen C, Sun X-G, Liu N, Mu Y, Hong C-C, Wei W, et al. Increased serum amyloid A and its association with autoantibodies, acute phase reactants and disease activity in patients with rheumatoid arthritis. Mol Med Rep. (2015) 11:1528–34. 10.3892/mmr.2014.2804 [DOI] [PubMed] [Google Scholar]
- 224.Chen ES, Song Z, Willett MH, Heine S, Yung RC, Liu MC, et al. Serum amyloid A regulates granulomatous inflammation in sarcoidosis through Toll-like receptor-2. Am J Respir Crit Care Med. (2010) 181:360–73. 10.1164/rccm.200905-0696OC [DOI] [PMC free article] [PubMed] [Google Scholar]
- 225.Jayaraman S, Fändrich M, Gursky O. Synergy between serum amyloid A and secretory phospholipase A2. eLife. (2019) 8:e46630. 10.7554/eLife.46630 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 226.Salazar A, Maña J, Pinto X, Argimon JM, Castiñeiras MJ, Fiol C, et al. Low levels of high density lipoprotein cholesterol in patients with active sarcoidosis. Atherosclerosis. (1998) 136:133–7. 10.1016/S0021-9150(97)00198-6 [DOI] [PubMed] [Google Scholar]
- 227.Salazar A, Maña J, Fiol C, Hurtado I, Argimon JM, Pujol R, et al. Influence of serum amyloid A on the decrease of high density lipoprotein-cholesterol in active sarcoidosis. Atherosclerosis. (2000) 152:497–502. 10.1016/S0021-9150(00)00368-3 [DOI] [PubMed] [Google Scholar]
- 228.Geamanu A, Gupta SV, Bauerfeld C, Samavati L. Metabolomics connects aberrant bioenergetic, transmethylation, and gut microbiota in sarcoidosis. Metab Off J Metab Soc. (2016) 12:35. 10.1007/s11306-015-0932-2 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 229.Talreja J, Farshi P, Alazizi A, Luca F, Pique-Regi R, Samavati L. RNA-sequencing identifies novel pathways in sarcoidosis monocytes. Sci Rep. (2017) 7:2720. 10.1038/s41598-017-02941-4 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 230.Damsky W, Thakral D, Emeagwali N, Galan A, King B. Tofacitinib treatment and molecular analysis of cutaneous sarcoidosis. N Engl J Med. (2018) 379:2540–6. 10.1056/NEJMoa1805958 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 231.Calender A, Lim CX, Weichhart T, Buisson A, Besnard V, Rollat-Farnier PA, et al. Exome sequencing and pathogenicity-network analysis of 5 French families implicate mTOR signalling and autophagy in familial sarcoidosis. Eur Respir J. (2019) 54:1900430 10.1183/13993003.00430-2019 [DOI] [PubMed] [Google Scholar]
- 232.Manzia TM, Bellini MI, Corona L, Toti L, Fratoni S, Cillis A, et al. Successful treatment of systemic de novo sarcoidosis with cyclosporine discontinuation and provision of rapamune after liver transplantation. Transpl Int. (2011) 24:e69–70. 10.1111/j.1432-2277.2011.01256.x [DOI] [PubMed] [Google Scholar]
- 233.Dodd KM, Yang J, Shen MH, Sampson JR, Tee AR. mTORC1 drives HIF-1α and VEGF-A signalling via multiple mechanisms involving 4E-BP1, S6K1 and STAT3. Oncogene. (2015) 34:2239–50. 10.1038/onc.2014.164 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 234.He L, Gomes AP, Wang X, Yoon SO, Lee G, Nagiec MJ, et al. mTORC1 promotes metabolic reprogramming by the suppression of GSK3-dependent Foxk1 phosphorylation. Mol Cell. (2018) 70:949–60.e4. 10.1016/j.molcel.2018.04.024 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 235.Iommarini L, Porcelli AM, Gasparre G, Kurelac I. Non-canonical mechanisms regulating hypoxia-inducible factor 1 alpha in cancer. Front Oncol. (2017) 7:286. 10.3389/fonc.2017.00286 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 236.Talreja J, Talwar H, Bauerfeld C, Grossman LI, Zhang K, Tranchida P, et al. HIF-1α regulates IL-1β and IL-17 in sarcoidosis. eLife. (2019) 8:e44519. 10.7554/eLife.44519 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 237.Hussaarts L, Smits HH, Schramm G, van der Ham AJ, van der Zon GC, Haas H, et al. Rapamycin and omega-1: mTOR-dependent and -independent Th2 skewing by human dendritic cells. Immunol Cell Biol. (2013) 91:486–9. 10.1038/icb.2013.31 [DOI] [PubMed] [Google Scholar]
- 238.Takagi K, Yamakuchi M, Matsuyama T, Kondo K, Uchida A, Misono S, et al. IL-13 enhances mesenchymal transition of pulmonary artery endothelial cells via down-regulation of miR-424/503 in vitro. Cell Signal. (2018) 42:270–80. 10.1016/j.cellsig.2017.10.019 [DOI] [PubMed] [Google Scholar]
- 239.Makboul R, Refaiy A, Abdelkawi IF, Hameed DA, Elderwy AA, Shalaby MM, et al. Alterations of mTOR and PTEN protein expression in schistosomal squamous cell carcinoma and urothelial carcinoma. Pathol Res Pract. (2016) 212:385–92. 10.1016/j.prp.2016.02.008 [DOI] [PubMed] [Google Scholar]
- 240.Torres-Hernandez A, Wang W, Nikiforov Y, Tejada K, Torres L, Kalabin A, et al. Targeting SYK signaling in myeloid cells protects against liver fibrosis and hepatocarcinogenesis. Oncogene. (2019) 38:4512–26. 10.1038/s41388-019-0734-5 [DOI] [PubMed] [Google Scholar]
- 241.Wu SM, Li TH, Yun H, Ai HW, Zhang KH. miR-140-3p knockdown suppresses cell proliferation and fibrogenesis in hepatic stellate cells via PTEN-Mediated AKT/mTOR signaling. Yonsei Med J. (2019) 60:561–9. 10.3349/ymj.2019.60.6.561 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 242.Liu Y-C, Gao X-X, Zhang Z-G, Lin Z-H, Zou Q-L. PPAR Gamma Coactivator 1 Beta (PGC-1β) Reduces Mammalian Target of Rapamycin (mTOR) Expression via a SIRT1-dependent mechanism in neurons. Cell Mol Neurobiol. (2017) 37:879–87. 10.1007/s10571-016-0425-5 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 243.Angela M, Endo Y, Asou HK, Yamamoto T, Tumes DJ, Tokuyama H, et al. Fatty acid metabolic reprogramming via mTOR-mediated inductions of PPARγ directs early activation of T cells. Nat Commun. (2016) 7:13683. 10.1038/ncomms13683 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 244.Zhu J, Zhang W, Zhang L, Xu L, Chen X, Zhou S, et al. IL-7 suppresses macrophage autophagy and promotes liver pathology in Schistosoma japonicum-infected mice. J Cell Mol Med. (2018) 22:3353–63. 10.1111/jcmm.13610 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 245.Herzig S, Shaw RJ. AMPK: guardian of metabolism and mitochondrial homeostasis. Nat Rev Mol Cell Biol. (2018) 19:121–35. 10.1038/nrm.2017.95 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 246.Inoki K, Kim J, Guan KL. AMPK and mTOR in cellular energy homeostasis and drug targets. Annu Rev Pharmacol Toxicol. (2012) 52:381–400. 10.1146/annurev-pharmtox-010611-134537 [DOI] [PubMed] [Google Scholar]
- 247.Sozio MS, Lu C, Zeng Y, Liangpunsakul S, Crabb DW. Activated AMPK inhibits PPAR-{alpha} and PPAR-{gamma} transcriptional activity in hepatoma cells. Am J Physiol Gastrointest Liver Physiol. (2011) 301:G739–47. 10.1152/ajpgi.00432.2010 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 248.Liu SH, Chiu CY, Huang LH, Chiang MT. Resistant maltodextrin ameliorates altered hepatic lipid homeostasis via activation of AMP-activated protein kinase in a high-fat diet-fed rat model. Nutrients. (2019) 11:291. 10.3390/nu11020291 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 249.Hotez PJ, Molyneux DH, Fenwick A, Ottesen E, Ehrlich Sachs S, Sachs JD. Incorporating a rapid-impact package for neglected tropical diseases with programs for HIV/AIDS, tuberculosis, and malaria. PLoS Med. (2006) 3:e102. 10.1371/journal.pmed.0030102 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 250.Said K, Hella J, Knopp S, Nassoro T, Shija N, Aziz F, et al. Schistosoma, other helminth infections, and associated risk factors in preschool-aged children in urban Tanzania. PLoS Negl Trop Dis. (2017) 11:e0006017. 10.1371/journal.pntd.0006017 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 251.DiNardo AR, Nishiguchi T, Mace EM, Rajapakshe K, Mtetwa G, Kay A, et al. Schistosomiasis induces persistent DNA methylation and tuberculosis-specific immune changes. J Immunol. (2018) 201:124–33. 10.4049/jimmunol.1800101 [DOI] [PMC free article] [PubMed] [Google Scholar]
- 252.Wajja A, Namutebi M, Apule B, Oduru G, Kiwanuka S, Akello M, et al. Lessons from the first clinical trial of a non-licensed vaccine among Ugandan adolescents: a phase II field trial of the tuberculosis candidate vaccine, MVA85A. [version 1; peer review: 1 approved, 2 approved with reservations]. Wellcome Open Res. (2018) 3:121 10.12688/wellcomeopenres.14736.1 [DOI] [PMC free article] [PubMed] [Google Scholar]