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Journal of Clinical Laboratory Analysis logoLink to Journal of Clinical Laboratory Analysis
. 2000 Jul 18;14(4):193–199. doi: 10.1002/1098-2825(2000)14:4<193::AID-JCLA9>3.0.CO;2-2

One‐step heminested PCR for amplification of Neisseria meningitidis DNA in cerebrospinal fluid

Jane H Atobe 1,, Mário H Hirata 1, Sumie Hoshino‐Shimizu 1, Manoel R Schmal 2, Elsa M Mamizuka 1
PMCID: PMC6807792  PMID: 10906773

Abstract

A one‐step polymerase chain reaction (Heminested‐PCR) was designed to target the 16S rRNA fragment simultaneously using a set of primers for the universal bacterial group and a Neisseria meningitidis species‐specific sequence for diagnostic purposes. The diagnostic features of the Heminested‐PCR were evaluated in the study of 168 cerebrospinal fluid (CSF) specimens from 84 patients with a N. meningitidis infection, meningitis caused by unrelated bacteria and other etiologies (57 patients), or suspicious cases (27 patients) with clinical symptoms of bacterial meningitis but with negative results from bacteriological procedures. About 90% of patients with bacterial meningitis, including those suspicious cases, had prior antibiotic therapy. The sensitivity, specificity, positive, and negative predictive values found in relation to culture and/or microscopy were 91.7, 100, 100, 100, and 90.5%, respectively. In patients suspected of having bacterial meningitis, the Heminested‐PCR revealed 51.9% (14 patients) positive for N. meningitidis infection and 40.7% (11 patients) positive for unrelated bacterial infections. The agreement of the Heminested‐PCR with culture and/or microscopy was high and ranked as almost perfect (kappa indices > 0.856), in contrast to its agreement with other techniques. These findings speak in favor of the molecular diagnosis of meningococcal meningitis in patients who are culture‐ and/or microscopy‐negative, due to their prior antibiotic treatment. J. Clin. Lab. Anal. 14:193–199, 2000. © 2000 Wiley‐Liss, Inc.

Keywords: Neisseria meningitidis, bacterial meningitis, molecular diagnosis

REFERENCES

  • 1. Tikhomirov E, Santamaria M, Esteves K. 1997. Meningococcal disease: public health burden and control. Rapp Trimest Statist Sanit Mond 50:170–177. [PubMed] [Google Scholar]
  • 2. Sáo Paulo. 1997. Secretaria de Estado da Saúde, SVE‐DDT Respiratória, CVE. Doença meningocócica no Estado de Sáo Paulo, 1979–1997.
  • 3. 1997. Sáo Paulo, Secretaria de Estado da Saúde, Instituto de Infectologia Emílio Ribas. Base de Dados: estatística, 1988–1997.
  • 4. Melles CEA, Lee IML, Taunay AE. 1984. Pesquisa de Antimicrobianos no Líquido Cefalorraquidiano. Rev Inst Adolfo Lutz 44:15–5159. [Google Scholar]
  • 5. Saunders NB, Shoemaker DR, Brandt BL, Zollinger WD. 1997. Confirmation of suspicious cases of meningococcal meningitis by PCR and enzyme‐linked immunosorbent assay. J Clin Microbiol 35:3215–3219. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 6. Ni H, Knight AI, Cartwright K, Palmer WH, McFadden J. 1992. Polymerase Chain Reaction for diagnosis of meningococcal meningitis. Lancet 340:1432–1434. [DOI] [PubMed] [Google Scholar]
  • 7. Newcombe J, Cartwright K, Palmer WH, McFadden J. 1996. PCR of peripheral blood for diagnosis of meningococcal disease. J Clin Microbiol 34:1637–1640. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 8. Caugant DA, Hoiby AE, Froholm OL, Brandtzaeg P. 1996. Polymerase chain reaction for case ascertainment of meningoccal meningitis: application to the cerebrospinal fluids collected in the course of the Norwegian meningococcal serogroup B protection trial. Scand J Infect Dis 28:149–153. [DOI] [PubMed] [Google Scholar]
  • 9. Borrow R, Claus H, Guiver M. 1997. Non‐culture diagnosis and serogroup determination of meningococcal B and C infection by a sialyltransferase (sia D) PCR ELISA. Epidemiol Infect 118:111–117. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 10. Kristiansen BE, Ask E, Jenkins A, et al. 1991. Rapid diagnosis of meningococcal meningitis by polimerase chain reaction. Lancet 337:1568–1569. [DOI] [PubMed] [Google Scholar]
  • 11. Kristiansen BE, Fermer C, Jenkins A, et al. 1995. PCR amplicon restriction endonuclease analysis of the chromosomal dhps gene of Neisseria meningitidis: a method for studying spread of the disease causing strain in contacts of patients with meningococcal disease. J Clin Microbiol 33:1174–1179. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 12. Olcén P, Lantz PG, Backman A, Radstrom P. 1995. Rapid diagnosis of bacterial meningitis by a seminested PCR strategy. Scand J Infect Dis 27:537–539. [DOI] [PubMed] [Google Scholar]
  • 13. Radstrom P, Backman A, Qian N, et al. 1994. Detection of bacterial DNA in cerebrospinal fluid by an assay for simultaneous detection of Neisseria meningitidis, Hemophilus influenzae, and streptococci using a seminested PCR strategy. J Clin Microbiol 32:2738–2744. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 14. Kotilainen P, Jalava J, Meurman O, et al. 1998. Diagnosis of meningococcal meningitis by broad‐range bacterial PCR with cerebrospinal fluid. J Clin Microbiol 36:2205–2209. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 15. Alkmin MGA, Landgraf IM, Hoshino‐Shimizu S. 1996. Detection of Neisseria meningitidis group B antigens by MB‐Dot‐ELISA in patients with meningitis. Bull Pan Am Health Org 30:212–217. [PubMed] [Google Scholar]
  • 16. Schoolnik GK. 1980. PCR detection of Shigella species and enteroinvasive Escherichia coli In: Persing DH, Smith TF, Tenover FC, White TJ, editors. Diagnostic molecular microbiology. Washington: American Society for Microbiology; p 277–281. [Google Scholar]
  • 17. Zhang QY, Jones DM, Saéz Nieto JA, Trallero EP, Pratt BG. 1990. Genetic diversity of penicillin‐binding protein 2 genes of penicillin‐resistance of N. meningitidis revealed by fingerprinting of amplified DNA. Antimicrob Agents Chemother 34:1523–1528. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 18. Pierre C, Lecossier D, Boussougant D, et al. 1991. Use of a reamplification protocol improves the sensitivity of detection of Mycobacterium tuberculosis in clinical samples by amplification of DNA. J Clin Microbiol 29:712–717. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 19. Kertesz DA, Byerne ESK, Chow AW. 1993. Characterization of Neisseria meningitidis by polimerase chain reaction and restriction endonuclease digestion of the porA gene. J Clin Microbiol 31:2594–2598. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 20. Galen RS, Gambino SR, editors. 1975. Beyond normality: the predictive value and efficiency of medical diagnosis. New York: John Wiley & Sons. 237 p. [Google Scholar]
  • 21. Maclure M, Willet WC. 1987. Misinterpretation and misuse of the kappa statistic. Amer J Epidemiol 126:161–169. [DOI] [PubMed] [Google Scholar]
  • 22. Fleiss JL. 1981. Statistical methods for rates and proportions. New York: John Wiley & Sons; p 217–225. [Google Scholar]
  • 23. Feinstein AR. 1984. Clinical epidemiology: the architecture of clinical research. Philadelphia: W.B. Saunders Co; p 185–186. [Google Scholar]
  • 24. Austin H. 1982. An appendix for the HP‐41CV In: Rothman KJ, Boice JD Jr, editors. Epidemiologic analysis with a programmable calculator. Boston: Epidemiology Resources, Inc.; p 31. [Google Scholar]
  • 25. Leong DU, Greisen KS. 1993. Detection of bacteria found in cerebrospinal fluid In: Persing DH, Smith TF Tenover FC, White TJ, editors. Diagnostic molecular microbiology principles and applications. Washington, DC: Amer Society for Microbiol; p 300–306. [Google Scholar]
  • 26. Greisen K, Loeffelholz M, Purohit A, Leong D. 1994. PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid. J Clin Microbiol 32:335–351. [DOI] [PMC free article] [PubMed] [Google Scholar]
  • 27. Vadher PJ, Vaidya NS, Soni P, Kale VV. 1991. Bacteriological study of meningococcal meningitis. J Post Med 37:76–78. [PubMed] [Google Scholar]

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